mRNA_H-paniculata_contig81611.16186.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig81611.16186.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 167 bits (424), Expect = 6.070e-45 Identity = 81/169 (47.93%), Postives = 111/169 (65.68%), Query Frame = 1
Query: 4 KDTYRMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQDIFTMVTAKGVYRPTRVPQGVLNATSYFHGTMGDVLAGLLRKVCEVWVDDIGIWAGTWQELMRRLWVVLEWLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERV 510
K TYR V D+RAVN I S PMP+LE + ++ A+ + +LD+LQGYW MPL P+AQ+IFTM+ G+Y P RVPQGVLNATSY+ GTM +L L C VWVDDI W T ++L+ L ++L + G++ AAHK + ++WCGK+YS + HD +R+
Sbjct: 709 KVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKVYSKGVIEHDRDRL 874
BLAST of mRNA_H-paniculata_contig81611.16186.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.600e-42 Identity = 80/170 (47.06%), Postives = 106/170 (62.35%), Query Frame = 1
Query: 1 KKDTYRMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQDIFTMVTAKGVYRPTRVPQGVLNATSYFHGTMGDVLAGLLRKVCEVWVDDIGIWAGTWQELMRRLWVVLEWLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERV 510
KK YR+V+D+RA N + MPN E ++ A + +LDLLQ YWQ PL P+AQ+IFT+ T G+Y P RVPQG+LNATSYF T+ +L GL C VWVDD+ W +L+ L ++L+ L+ G+Y AAHK F + WCGK+YS V HDPER+
Sbjct: 806 KKGGYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYSEGQVEHDPERL 972
BLAST of mRNA_H-paniculata_contig81611.16186.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE) HSP 1 Score: 147 bits (371), Expect = 8.050e-38 Identity = 78/171 (45.61%), Postives = 104/171 (60.82%), Query Frame = 1
Query: 1 KKDTYRMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQDIFTMVTAKGVYRPTRVPQGVLNATSYFHGTMGDVLAGLLRKVCEVWVDDIGIWAGTWQELMRRLWVVLEWLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQ 513
++ YR+ DY N + +P+ E + GA+ F LDLLQGYWQMPL A++IF++ T +G++ PTRVPQ VLNAT YF M ++L GL C VWVDD W +L+ L +L LQ GI+AAAHK F ++RWCGK+YSG V+ DPER+Q
Sbjct: 459 REGEYRLGNDYLRANLQCEKVPIVVPSQEVQVSMLQGATCFGKLDLLQGYWQMPLAESAREIFSIATPEGLFEPTRVPQDVLNATGYFQAVMTEILQGLN---CAVWVDDDIWWGIDETDLLNTLDEILWRLQDNGIFAAAHKCPFFDTKIRWCGKVYSGGQVASDPERLQ 626
BLAST of mRNA_H-paniculata_contig81611.16186.1 vs. uniprot
Match: A0A6A3GQ28_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GQ28_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.260e-36 Identity = 69/169 (40.83%), Postives = 100/169 (59.17%), Query Frame = 1
Query: 7 DTYRMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQDIFTMVTAKGVYRPTRVPQGVLNATSYFHGTMGDVLAGLLRKVCEVWVDDIGIWAGTWQELMRRLWVVLEWLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQ 513
D++R DYR +NN+ P A MP+LE G + D L+G+WQ+PLD +Q+ + +T KG++ PTRVPQG +A +F T+ VL L+ K VW+DD+ ++A T +EL+ + L L G+ K+ LF E+RWCG+I S A V HDPER+Q
Sbjct: 323 DSFRQTNDYRPLNNVTEPIAGVMPSLEVALEHCKGKMFYAVFDFLKGFWQLPLDKSSQEYMSYMTDKGIFTPTRVPQGSTDAALHFQSTVEMVLGDLVNKSVIVWIDDLLVFADTAEELLEAIEATLTKLDEYGLILNPKKSALFLTEVRWCGRIISKAGVGHDPERIQ 491
BLAST of mRNA_H-paniculata_contig81611.16186.1 vs. uniprot
Match: A0A6A3L091_9STRA (RNA-directed DNA polymerase n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L091_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.780e-36 Identity = 64/166 (38.55%), Postives = 99/166 (59.64%), Query Frame = 1
Query: 13 YRMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQDIFTMVTAKGVYRPTRVPQGVLNATSYFHGTMGDVLAGLLRKVCEVWVDDIGIWAGTWQELMRRLWVVLEWLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERV 510
+R+ DYR +N++ P A MPNL + GA F DLL+G+WQ+PL P Q++F+ +T VY PTRVPQG ++ +F + +LA LL + C +W+DDI ++A + E +R E ++ G+ + K LF+ ++ WCGK+ SG + HDPER+
Sbjct: 417 FRITTDYRVINSMTVPIAGTMPNLASAAGAVRGAVAFARFDLLKGFWQLPLHPNCQEMFSFLTEDAVYTPTRVPQGATDSALHFQAQLQRILAPLLHRNCLLWIDDILLFASSMDEFLRVFREFFELIKDHGLKLSVTKCVLFQPQVLWCGKMVSGTDIQHDPERL 582
BLAST of mRNA_H-paniculata_contig81611.16186.1 vs. uniprot
Match: A0A6A4E9W8_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4E9W8_9STRA) HSP 1 Score: 141 bits (355), Expect = 9.990e-36 Identity = 69/169 (40.83%), Postives = 100/169 (59.17%), Query Frame = 1
Query: 7 DTYRMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQDIFTMVTAKGVYRPTRVPQGVLNATSYFHGTMGDVLAGLLRKVCEVWVDDIGIWAGTWQELMRRLWVVLEWLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQ 513
D++R DYR +NN+ P A MP+LE G + D L+G+WQ+PLD +Q+ + +T KG++ PTRVPQG +A +F T+ VL L+ K VW+DD+ ++A T +EL+ + L L G+ K+ LF E+RWCG+I S A V HDPER+Q
Sbjct: 564 DSFRQTNDYRPLNNVTEPIAGVMPSLEVALEHCKGKMFYAVFDFLKGFWQLPLDKSSQEYMSYMTDKGIFTPTRVPQGNTDAALHFQSTVEMVLGDLVNKSVIVWIDDLLVFADTAEELLEAIEATLTKLDEYGLILNPKKSALFLSEVRWCGRIISKAGVGHDPERIQ 732
BLAST of mRNA_H-paniculata_contig81611.16186.1 vs. uniprot
Match: A0A6G0RPS6_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPS6_9STRA) HSP 1 Score: 133 bits (334), Expect = 6.390e-35 Identity = 64/165 (38.79%), Postives = 95/165 (57.58%), Query Frame = 1
Query: 19 MVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQDIFTMVTAKGVYRPTRVPQGVLNATSYFHGTMGDVLAGLLRKVCEVWVDDIGIWAGTWQELMRRLWVVLEWLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQ 513
M DYR VN L P A PNL + + + GA F +LL+G+WQ+PL P +Q++F+ +T GV+ PTRVPQG ++ +F M + LL VW+DDI ++A + E + +L L+ R + A K KLF +++ WCGK+ G + HDP R+Q
Sbjct: 1 MTVDYRPVNQLTVPLAAATPNLAVVTQSVKGAYGFGPFNLLKGFWQLPLSPASQELFSFLTEDGVFTPTRVPQGASDSALHFQAQMQECFRSLLYNAALVWIDDILLFARSPGEFLEKLRAFFIILRQRNLKLNAAKCKLFSKKVIWCGKVIDGTGIEHDPTRLQ 165
BLAST of mRNA_H-paniculata_contig81611.16186.1 vs. uniprot
Match: A0A6A3KNY9_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3KNY9_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.160e-34 Identity = 66/167 (39.52%), Postives = 97/167 (58.08%), Query Frame = 1
Query: 13 YRMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQDIFTMVTAKGVYRPTRVPQGVLNATSYFHGTMGDVLAGLLRKVCEVWVDDIGIWAGTWQELMRRLWVVLEWLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQ 513
YRM DYR VN L P A PNL + + + GA F +LL+G+WQ+PL P +Q++F+ +T GV+ PTRVPQG ++ +F M + LL VW+DDI ++A + E + +L L+ R + A K KLF +++ WCGK+ G + HDP R+Q
Sbjct: 362 YRMTVDYRPVNQLTVPLAAATPNLAVVTQSVKGAYGFGPFNLLKGFWQLPLSPTSQELFSFLTEDGVFTPTRVPQGASDSALHFQAQMQECFRSLLYNAALVWIDDILLFARSPGEFLEKLRAFFIILRQRNLKLNAAKCKLFSKKVIWCGKVIDGTGIEHDPTRLQ 528
BLAST of mRNA_H-paniculata_contig81611.16186.1 vs. uniprot
Match: A0A6A3K6I0_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3K6I0_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.320e-34 Identity = 68/169 (40.24%), Postives = 99/169 (58.58%), Query Frame = 1
Query: 7 DTYRMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQDIFTMVTAKGVYRPTRVPQGVLNATSYFHGTMGDVLAGLLRKVCEVWVDDIGIWAGTWQELMRRLWVVLEWLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQ 513
D++R DYR +NN+ A MP+LE G + D L+G+WQ+PLD +Q+ + +T KG++ PTRVPQG +A +F T+ VL L+ K VW+DD+ ++A T +EL+ + L L G+ K+ LF E+RWCG+I S A V HDPER+Q
Sbjct: 564 DSFRQTNDYRPLNNVTEAIAGVMPSLEVALEHCKGKMFYAVFDFLKGFWQLPLDKSSQEYMSYMTDKGIFTPTRVPQGNTDAALHFQSTVEMVLGDLVNKSVIVWIDDLLVFADTAEELLEAIEATLTKLDEYGLILNPKKSALFLTEVRWCGRIISKAGVGHDPERIQ 732
BLAST of mRNA_H-paniculata_contig81611.16186.1 vs. uniprot
Match: A0A6A3GVC4_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3GVC4_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.040e-33 Identity = 65/166 (39.16%), Postives = 95/166 (57.23%), Query Frame = 1
Query: 16 RMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQDIFTMVTAKGVYRPTRVPQGVLNATSYFHGTMGDVLAGLLRKVCEVWVDDIGIWAGTWQELMRRLWVVLEWLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQ 513
RM D R+VN P + PMP L+ + G+ GA VF LD +GYWQ+PL P +Q++++ VT +G+Y PTRVP G +A +Y G + ++ L+ W+DDI +A L+ L VL + G+ A K + F E++WCG++ S V H PERVQ
Sbjct: 69 RMTIDTRSVNERTEPMSWPMPVLDVVLGGLEGARVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCQGVVDEIFGDLIGDGILAWLDDILGYAENESALLELLDKVLSRCEAYGLKLHAKKCQFFATEVKWCGRVISADGVKHCPERVQ 234 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81611.16186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig81611.16186.1 >prot_H-paniculata_contig81611.16186.1 ID=prot_H-paniculata_contig81611.16186.1|Name=mRNA_H-paniculata_contig81611.16186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp MVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDback to top mRNA from alignment at H-paniculata_contig81611:6..518- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig81611.16186.1 ID=mRNA_H-paniculata_contig81611.16186.1|Name=mRNA_H-paniculata_contig81611.16186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=513bp|location=Sequence derived from alignment at H-paniculata_contig81611:6..518- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig81611:6..518- >mRNA_H-paniculata_contig81611.16186.1 ID=mRNA_H-paniculata_contig81611.16186.1|Name=mRNA_H-paniculata_contig81611.16186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig81611:6..518- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |