mRNA_H-paniculata_contig81556.16178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: UPI00193E8182 (secreted RxLR effector protein 161-like n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193E8182) HSP 1 Score: 84.3 bits (207), Expect = 1.200e-17 Identity = 42/104 (40.38%), Postives = 75/104 (72.12%), Query Frame = 1
Query: 1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
+R DI++AVS+ AR P +H ++VKR+++YLKG ++ + F ++ + EL G+C++ Y AG+ K RSTSG ++ + GG + +SSSLQ++TA S+++A+ ++
Sbjct: 36 SRPDISYAVSKLARYSNDPQQLHWKAVKRVMKYLKGTIDVSLYFHKELSDELIGYCDSDY-AGELKERRSTSGYVFLIHGGPIAWSSSLQRITALSSSEAEYMS 138
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: Q9SHR5_ARATH (F28L22.3 protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SHR5_ARATH) HSP 1 Score: 86.3 bits (212), Expect = 1.710e-17 Identity = 43/104 (41.35%), Postives = 72/104 (69.23%), Query Frame = 1
Query: 1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
TR D+A+A+ +R M+ P +H E+VK ++RYLKGA +L + F+++ + +TG+C+++Y A D R RS SG ++ + G +V + +SLQ + A STT+A+ IA
Sbjct: 1151 TRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVFTKEKDFTVTGYCDSNYAA-DLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIA 1253
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: A0A8H7TXH5_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7TXH5_9APHY) HSP 1 Score: 85.9 bits (211), Expect = 2.320e-17 Identity = 51/104 (49.04%), Postives = 71/104 (68.27%), Query Frame = 1
Query: 1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
TR DIAFAVS AR MA+P+PVH ++ KR+LRYLKG +L++TF S+ L G+ +A + A P R S SG ++ SGGS+ +SS Q + A STT+A+ I+
Sbjct: 1027 TRPDIAFAVSTLARFMATPAPVHWDAAKRVLRYLKGTRDLRLTFGTSSHT-LVGYSDADW-ASQPHR-HSISGHVFLYSGGSISWSSRKQPIIALSTTEAEYIS 1127
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: UPI001AD8A9B0 (secreted RxLR effector protein 161-like n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8A9B0) HSP 1 Score: 82.4 bits (202), Expect = 3.360e-17 Identity = 45/104 (43.27%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
TR D+ + +S +R M SP+ +HM++VKR+L+YLKG +L I + R+ N +L + ++ Y AGD RSTSG ++ LS G+V +SS Q + STT+A+ IA
Sbjct: 6 TRPDLMYVISLISRFMGSPTELHMQAVKRVLKYLKGTVDLGILYKRNGNEQLEAYTDSDY-AGDLDDQRSTSGYVFLLSTGAVSWSSKKQPVVTLSTTEAEFIA 108
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: A0A6D2IS22_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IS22_9BRAS) HSP 1 Score: 85.1 bits (209), Expect = 4.220e-17 Identity = 44/104 (42.31%), Postives = 71/104 (68.27%), Query Frame = 1
Query: 1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
+R D+A+AV +R M P H +V+ ILRYLKGA++ +TF++DS +++TG+C++ Y A DP + RS +G ++ + G +V + S LQK A STT+A+ +A
Sbjct: 561 SRPDLAYAVGMVSRYMGKPGREHWSAVQWILRYLKGAASKCLTFTKDSELKVTGYCDSDY-ATDPDKRRSITGYVFTVGGNTVSWRSCLQKFVALSTTEAEYVA 663
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: A0A151UDF9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UDF9_CAJCA) HSP 1 Score: 82.8 bits (203), Expect = 4.930e-17 Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
TR DI F+VS +R M +P H + KRILRYL+G ++L I + R +LT +C++ Y AGD +STSG ++ LS G++ +SS Q + STT+A+ +A
Sbjct: 44 TRPDIMFSVSVVSRFMENPKETHYVAAKRILRYLRGTTDLGIHYKRQGKTDLTSYCDSDY-AGDQDDRKSTSGYVFLLSSGAISWSSRKQPIVTLSTTEAEFVA 146
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: UPI0006A6E700 (retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6E700) HSP 1 Score: 82.0 bits (201), Expect = 9.370e-17 Identity = 42/103 (40.78%), Postives = 69/103 (66.99%), Query Frame = 1
Query: 1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLI 309
TR D+A+A+ R ++SP +H ++VKRILRYL+G + +K+ ++ + + G+C+A YGAG KR +S +G ++ + G V + S+LQK A STT+A+ I
Sbjct: 51 TRPDLAYAIGMVYRFISSPIKIHWQAVKRILRYLRGTTKVKLAYTNEGKFIVRGYCDADYGAGLDKR-KSVTGMVFTVGGNVVSWRSNLQKSIALSTTEAEWI 152
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: A0A151RDW4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RDW4_CAJCA) HSP 1 Score: 83.6 bits (205), Expect = 1.290e-16 Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
TR DI F+VS +R M +P H + KRILRYL+G ++L I + R +LT +C++ Y AGD +STSG ++ LS G++ +SS Q + STT+A+ +A
Sbjct: 255 TRPDIMFSVSMVSRFMENPKETHYVAAKRILRYLRGTTDLGIHYKRQGKTDLTSYCDSDY-AGDQDDRKSTSGYVFLLSSGAISWSSRKQPIVTLSTTEAEFVA 357
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: A0A151QMF9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QMF9_CAJCA) HSP 1 Score: 83.6 bits (205), Expect = 1.430e-16 Identity = 48/103 (46.60%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLI 309
+R DI F+V AR P VH+++VKRILRYLKG +NL I F R N L GFC+A+Y AGD +STSG +FL V ++S Q A ST +A+ +
Sbjct: 389 SRPDIMFSVCVCARFQVRPKKVHLQAVKRILRYLKGTANLGINFYRSQNFSLLGFCDANY-AGDKWERKSTSGGCHFLGRCLVSWTSKRQSTIALSTCEAEYV 490
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: A0A151SRJ0_CAJCA (Copia protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SRJ0_CAJCA) HSP 1 Score: 79.7 bits (195), Expect = 2.110e-16 Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 1
Query: 1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
+R DI F+V AR P+ VH+++VKRILRYLKG +NL I F R L G+C+A Y AGD +STSG +FL V ++S Q A ST +A+ +A
Sbjct: 11 SRPDIMFSVYVYARFQVRPNEVHLQAVKRILRYLKGIANLGINFYRSQKFSLLGYCDADY-AGDKWERKSTSGGCHFLGCCLVSWTSKRQNTIALSTCEAEYVA 113 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig81556.16178.1 >prot_H-paniculata_contig81556.16178.1 ID=prot_H-paniculata_contig81556.16178.1|Name=mRNA_H-paniculata_contig81556.16178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp MDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELback to top mRNA from alignment at H-paniculata_contig81556:208..519- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig81556.16178.1 ID=mRNA_H-paniculata_contig81556.16178.1|Name=mRNA_H-paniculata_contig81556.16178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig81556:208..519- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig81556:208..519- >mRNA_H-paniculata_contig81556.16178.1 ID=mRNA_H-paniculata_contig81556.16178.1|Name=mRNA_H-paniculata_contig81556.16178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig81556:208..519- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |