mRNA_H-paniculata_contig81556.16178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig81556.16178.1
Unique NamemRNA_H-paniculata_contig81556.16178.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: UPI00193E8182 (secreted RxLR effector protein 161-like n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193E8182)

HSP 1 Score: 84.3 bits (207), Expect = 1.200e-17
Identity = 42/104 (40.38%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
            +R DI++AVS+ AR    P  +H ++VKR+++YLKG  ++ + F ++ + EL G+C++ Y AG+ K  RSTSG ++ + GG + +SSSLQ++TA S+++A+ ++
Sbjct:   36 SRPDISYAVSKLARYSNDPQQLHWKAVKRVMKYLKGTIDVSLYFHKELSDELIGYCDSDY-AGELKERRSTSGYVFLIHGGPIAWSSSLQRITALSSSEAEYMS 138          
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: Q9SHR5_ARATH (F28L22.3 protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SHR5_ARATH)

HSP 1 Score: 86.3 bits (212), Expect = 1.710e-17
Identity = 43/104 (41.35%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
            TR D+A+A+   +R M+ P  +H E+VK ++RYLKGA +L + F+++ +  +TG+C+++Y A D  R RS SG ++ + G +V + +SLQ + A STT+A+ IA
Sbjct: 1151 TRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVFTKEKDFTVTGYCDSNYAA-DLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIA 1253          
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: A0A8H7TXH5_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7TXH5_9APHY)

HSP 1 Score: 85.9 bits (211), Expect = 2.320e-17
Identity = 51/104 (49.04%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
            TR DIAFAVS  AR MA+P+PVH ++ KR+LRYLKG  +L++TF   S+  L G+ +A + A  P R  S SG ++  SGGS+ +SS  Q + A STT+A+ I+
Sbjct: 1027 TRPDIAFAVSTLARFMATPAPVHWDAAKRVLRYLKGTRDLRLTFGTSSHT-LVGYSDADW-ASQPHR-HSISGHVFLYSGGSISWSSRKQPIIALSTTEAEYIS 1127          
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: UPI001AD8A9B0 (secreted RxLR effector protein 161-like n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8A9B0)

HSP 1 Score: 82.4 bits (202), Expect = 3.360e-17
Identity = 45/104 (43.27%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
            TR D+ + +S  +R M SP+ +HM++VKR+L+YLKG  +L I + R+ N +L  + ++ Y AGD    RSTSG ++ LS G+V +SS  Q +   STT+A+ IA
Sbjct:    6 TRPDLMYVISLISRFMGSPTELHMQAVKRVLKYLKGTVDLGILYKRNGNEQLEAYTDSDY-AGDLDDQRSTSGYVFLLSTGAVSWSSKKQPVVTLSTTEAEFIA 108          
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: A0A6D2IS22_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IS22_9BRAS)

HSP 1 Score: 85.1 bits (209), Expect = 4.220e-17
Identity = 44/104 (42.31%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
            +R D+A+AV   +R M  P   H  +V+ ILRYLKGA++  +TF++DS +++TG+C++ Y A DP + RS +G ++ + G +V + S LQK  A STT+A+ +A
Sbjct:  561 SRPDLAYAVGMVSRYMGKPGREHWSAVQWILRYLKGAASKCLTFTKDSELKVTGYCDSDY-ATDPDKRRSITGYVFTVGGNTVSWRSCLQKFVALSTTEAEYVA 663          
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: A0A151UDF9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UDF9_CAJCA)

HSP 1 Score: 82.8 bits (203), Expect = 4.930e-17
Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
            TR DI F+VS  +R M +P   H  + KRILRYL+G ++L I + R    +LT +C++ Y AGD    +STSG ++ LS G++ +SS  Q +   STT+A+ +A
Sbjct:   44 TRPDIMFSVSVVSRFMENPKETHYVAAKRILRYLRGTTDLGIHYKRQGKTDLTSYCDSDY-AGDQDDRKSTSGYVFLLSSGAISWSSRKQPIVTLSTTEAEFVA 146          
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: UPI0006A6E700 (retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6E700)

HSP 1 Score: 82.0 bits (201), Expect = 9.370e-17
Identity = 42/103 (40.78%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLI 309
            TR D+A+A+    R ++SP  +H ++VKRILRYL+G + +K+ ++ +    + G+C+A YGAG  KR +S +G ++ + G  V + S+LQK  A STT+A+ I
Sbjct:   51 TRPDLAYAIGMVYRFISSPIKIHWQAVKRILRYLRGTTKVKLAYTNEGKFIVRGYCDADYGAGLDKR-KSVTGMVFTVGGNVVSWRSNLQKSIALSTTEAEWI 152          
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: A0A151RDW4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RDW4_CAJCA)

HSP 1 Score: 83.6 bits (205), Expect = 1.290e-16
Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
            TR DI F+VS  +R M +P   H  + KRILRYL+G ++L I + R    +LT +C++ Y AGD    +STSG ++ LS G++ +SS  Q +   STT+A+ +A
Sbjct:  255 TRPDIMFSVSMVSRFMENPKETHYVAAKRILRYLRGTTDLGIHYKRQGKTDLTSYCDSDY-AGDQDDRKSTSGYVFLLSSGAISWSSRKQPIVTLSTTEAEFVA 357          
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: A0A151QMF9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QMF9_CAJCA)

HSP 1 Score: 83.6 bits (205), Expect = 1.430e-16
Identity = 48/103 (46.60%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLI 309
            +R DI F+V   AR    P  VH+++VKRILRYLKG +NL I F R  N  L GFC+A+Y AGD    +STSG  +FL    V ++S  Q   A ST +A+ +
Sbjct:  389 SRPDIMFSVCVCARFQVRPKKVHLQAVKRILRYLKGTANLGINFYRSQNFSLLGFCDANY-AGDKWERKSTSGGCHFLGRCLVSWTSKRQSTIALSTCEAEYV 490          
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Match: A0A151SRJ0_CAJCA (Copia protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SRJ0_CAJCA)

HSP 1 Score: 79.7 bits (195), Expect = 2.110e-16
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 1
Query:    1 TRMDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIELTGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKLIA 312
            +R DI F+V   AR    P+ VH+++VKRILRYLKG +NL I F R     L G+C+A Y AGD    +STSG  +FL    V ++S  Q   A ST +A+ +A
Sbjct:   11 SRPDIMFSVYVYARFQVRPNEVHLQAVKRILRYLKGIANLGINFYRSQKFSLLGYCDADY-AGDKWERKSTSGGCHFLGCCLVSWTSKRQNTIALSTCEAEYVA 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81556.16178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00193E81821.200e-1740.38secreted RxLR effector protein 161-like n=1 Tax=So... [more]
Q9SHR5_ARATH1.710e-1741.35F28L22.3 protein n=1 Tax=Arabidopsis thaliana TaxI... [more]
A0A8H7TXH5_9APHY2.320e-1749.04Integrase catalytic domain-containing protein n=1 ... [more]
UPI001AD8A9B03.360e-1743.27secreted RxLR effector protein 161-like n=1 Tax=Ro... [more]
A0A6D2IS22_9BRAS4.220e-1742.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151UDF9_CAJCA4.930e-1742.31Retrovirus-related Pol polyprotein from transposon... [more]
UPI0006A6E7009.370e-1740.78retrovirus-related Pol polyprotein from transposon... [more]
A0A151RDW4_CAJCA1.290e-1642.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A151QMF9_CAJCA1.430e-1646.60Retrovirus-related Pol polyprotein from transposon... [more]
A0A151SRJ0_CAJCA2.110e-1645.19Copia protein n=1 Tax=Cajanus cajan TaxID=3821 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81556contigH-paniculata_contig81556:208..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QHRW@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog67593.Physo109433
Model size312
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.348038-CDS-H-paniculata_contig81556:207..5131622931022.348038-CDS-H-paniculata_contig81556:207..513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81556 208..513 -
1691481554.8340518-CDS-H-paniculata_contig81556:207..5131691481554.8340518-CDS-H-paniculata_contig81556:207..513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81556 208..513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.3641975-UTR-H-paniculata_contig81556:513..5191622931022.3641975-UTR-H-paniculata_contig81556:513..519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig81556 514..519 -
1691481554.8483303-UTR-H-paniculata_contig81556:513..5191691481554.8483303-UTR-H-paniculata_contig81556:513..519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig81556 514..519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81556.16178.1prot_H-paniculata_contig81556.16178.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig81556 208..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig81556.16178.1

>prot_H-paniculata_contig81556.16178.1 ID=prot_H-paniculata_contig81556.16178.1|Name=mRNA_H-paniculata_contig81556.16178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MDIAFAVSQAARLMASPSPVHMESVKRILRYLKGASNLKITFSRDSNIEL
TGFCNASYGAGDPKRARSTSGSMYFLSGGSVHFSSSLQKLTAQSTTKAKL
IA
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mRNA from alignment at H-paniculata_contig81556:208..519-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig81556.16178.1 ID=mRNA_H-paniculata_contig81556.16178.1|Name=mRNA_H-paniculata_contig81556.16178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig81556:208..519- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCGTATGGACATAGCGTTCGCTGTCTCACAAGCGGCGCGCTTAATGGC CAGTCCTTCCCCCGTTCACATGGAAAGCGTGAAGCGCATCTTGCGCTACC TAAAAGGCGCATCAAACCTAAAAATTACTTTCAGTCGCGACTCCAACATC GAGCTAACCGGCTTCTGCAACGCCTCCTATGGCGCTGGCGACCCCAAGAG AGCTAGGTCAACCTCGGGGAGCATGTACTTCCTCTCCGGTGGAAGTGTTC ATTTTAGTTCGAGCCTACAGAAACTTACGGCTCAGTCAACCACCAAGGCG AAACTAATAGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig81556:208..519-

>mRNA_H-paniculata_contig81556.16178.1 ID=mRNA_H-paniculata_contig81556.16178.1|Name=mRNA_H-paniculata_contig81556.16178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig81556:208..519- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACATAGCGTTCGCTGTCTCACAAGCGGCGCGCTTAATGGCCAGTCC
TTCCCCCGTTCACATGGAAAGCGTGAAGCGCATCTTGCGCTACCTAAAAG
GCGCATCAAACCTAAAAATTACTTTCAGTCGCGACTCCAACATCGAGCTA
ACCGGCTTCTGCAACGCCTCCTATGGCGCTGGCGACCCCAAGAGAGCTAG
GTCAACCTCGGGGAGCATGTACTTCCTCTCCGGTGGAAGTGTTCATTTTA
GTTCGAGCCTACAGAAACTTACGGCTCAGTCAACCACCAAGGCGAAACTA
ATAGCAATGGACATAGCGTTCGCTGTCTCACAAGCGGCGCGCTTAATGGC
CAGTCCTTCCCCCGTTCACATGGAAAGCGTGAAGCGCATCTTGCGCTACC
TAAAAGGCGCATCAAACCTAAAAATTACTTTCAGTCGCGACTCCAACATC
GAGCTAACCGGCTTCTGCAACGCCTCCTATGGCGCTGGCGACCCCAAGAG
AGCTAGGTCAACCTCGGGGAGCATGTACTTCCTCTCCGGTGGAAGTGTTC
ATTTTAGTTCGAGCCTACAGAAACTTACGGCTCAGTCAACCACCAAGGCG
AAACTAATAGCA
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