mRNA_H-paniculata_contig8147.16172.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8147.16172.1
Unique NamemRNA_H-paniculata_contig8147.16172.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8147.16172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8147contigH-paniculata_contig8147:1715..2294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size580
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8147.16172.1prot_H-paniculata_contig8147.16172.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8147 1773..2093 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.6949885-UTR-H-paniculata_contig8147:1714..17721622931020.6949885-UTR-H-paniculata_contig8147:1714..1772Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8147 1715..1772 +
1691481553.8988795-UTR-H-paniculata_contig8147:1714..17721691481553.8988795-UTR-H-paniculata_contig8147:1714..1772Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8147 1715..1772 +
1622931020.72793-UTR-H-paniculata_contig8147:2093..22941622931020.72793-UTR-H-paniculata_contig8147:2093..2294Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8147 2094..2294 +
1691481553.9260576-UTR-H-paniculata_contig8147:2093..22941691481553.9260576-UTR-H-paniculata_contig8147:2093..2294Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8147 2094..2294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.7142506-CDS-H-paniculata_contig8147:1772..20931622931020.7142506-CDS-H-paniculata_contig8147:1772..2093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8147 1773..2093 +
1691481553.9135053-CDS-H-paniculata_contig8147:1772..20931691481553.9135053-CDS-H-paniculata_contig8147:1772..2093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8147 1773..2093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8147.16172.1

>prot_H-paniculata_contig8147.16172.1 ID=prot_H-paniculata_contig8147.16172.1|Name=mRNA_H-paniculata_contig8147.16172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MSNPLHSNARSFPSSIRLLEKEGNSIFSSRSFGSTRHNSGTGAVIDREIH
LYCHFWYFFQCTTIIIAIAAIGRSGLILMIIVPSASGLLIADAAAVVVVA
TVLVCA*
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mRNA from alignment at H-paniculata_contig8147:1715..2294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8147.16172.1 ID=mRNA_H-paniculata_contig8147.16172.1|Name=mRNA_H-paniculata_contig8147.16172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=580bp|location=Sequence derived from alignment at H-paniculata_contig8147:1715..2294+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTGAGAAGACAAGACTCAAGTTCGGAAGAAAATACTGCTTTTACTTCG
CGTCGCACATGTCGAACCCGCTCCATAGCAACGCTCGCTCGTTTCCAAGC
AGCATTCGTCTTCTCGAAAAGGAAGGTAACAGCATCTTCAGTAGCAGGAG
CTTCGGCAGCACCAGACACAATAGTGGCACTGGCGCCGTCATCGACCGAG
AGATCCATCTCTACTGCCACTTCTGGTACTTCTTCCAGTGCACTACTATC
ATCATCGCCATTGCTGCCATTGGGCGCAGTGGGCTCATCTTGATGATCAT
CGTTCCTTCGGCCAGCGGGCTGTTGATTGCTGATGCTGCTGCTGTCGTCG
TCGTTGCTACTGTGCTCGTTTGCGCATGAAGAGGAGGGGACGCCTGTCGT
CATCATCACCACGTCCTGTTTGAGGACGGTAGGGGGGAGGGCGGGAGTAG
AGCTACAGCTACTGATTCTGCTACTGGTGCTGCCACATGTTCTTGAGTAA
CCGATAGCCATATCATCTTCGTCGGCATCAGCAGTAGTGAGTTGTGCTAC
GTGGACGTTTGCGGTGTTGGGAAGGGTCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig8147:1715..2294+

>mRNA_H-paniculata_contig8147.16172.1 ID=mRNA_H-paniculata_contig8147.16172.1|Name=mRNA_H-paniculata_contig8147.16172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig8147:1715..2294+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAACCCGCTCCATAGCAACGCTCGCTCGTTTCCAAGCAGCATTCG
TCTTCTCGAAAAGGAAGGTAACAGCATCTTCAGTAGCAGGAGCTTCGGCA
GCACCAGACACAATAGTGGCACTGGCGCCGTCATCGACCGAGAGATCCAT
CTCTACTGCCACTTCTGGTACTTCTTCCAGTGCACTACTATCATCATCGC
CATTGCTGCCATTGGGCGCAGTGGGCTCATCTTGATGATCATCGTTCCTT
CGGCCAGCGGGCTGTTGATTGCTGATGCTGCTGCTGTCGTCGTCGTTGCT
ACTGTGCTCGTTTGCGCATGAATGTCGAACCCGCTCCATAGCAACGCTCG
CTCGTTTCCAAGCAGCATTCGTCTTCTCGAAAAGGAAGGTAACAGCATCT
TCAGTAGCAGGAGCTTCGGCAGCACCAGACACAATAGTGGCACTGGCGCC
GTCATCGACCGAGAGATCCATCTCTACTGCCACTTCTGGTACTTCTTCCA
GTGCACTACTATCATCATCGCCATTGCTGCCATTGGGCGCAGTGGGCTCA
TCTTGATGATCATCGTTCCTTCGGCCAGCGGGCTGTTGATTGCTGATGCT
GCTGCTGTCGTCGTCGTTGCTACTGTGCTCGTTTGCGCATGA
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