mRNA_H-paniculata_contig81430.16167.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig81430.16167.1
Unique NamemRNA_H-paniculata_contig81430.16167.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig81430.16167.1 vs. uniprot
Match: A0A6H5KGJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ7_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 5.430e-44
Identity = 67/81 (82.72%), Postives = 69/81 (85.19%), Query Frame = -2
Query:    3 MGMAPYAGM*SKFAFRNITISTQYVSMRLRFGGRRLPHPLKSRSICAAEAWFPNTCWATGARAGNWFLPLVAHQPSTSFGC 245
            MGM PYAGM SKFA  NITIS  YVS+RLRF   R+P PLKSRSICAAEAWFPNTCWATGAR GNWFLPLVAHQPSTS GC
Sbjct:    1 MGMTPYAGMLSKFALGNITISNPYVSVRLRFEVMRVPQPLKSRSICAAEAWFPNTCWATGARVGNWFLPLVAHQPSTSLGC 81          
BLAST of mRNA_H-paniculata_contig81430.16167.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 2.250e-40
Identity = 62/89 (69.66%), Postives = 70/89 (78.65%), Query Frame = 1
Query:    1 LHPKDVLGWWATKGKNQFPALAPVAQQVFGNQASAAQIERDFSGCGNLLPPNRSRMDTYWVEMVMFLKANFDHIPAYGAIPMVAPKDIR 267
            L  +++L WW   G+  FP LAPVAQQVFGNQA AAQ+ERDFSGC NLL  NRSRMDTYWVEMVMFL ANF+HIP +  IPM+A KDI 
Sbjct:   25 LDTREILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIH 113          
BLAST of mRNA_H-paniculata_contig81430.16167.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.320e-36
Identity = 63/89 (70.79%), Postives = 70/89 (78.65%), Query Frame = 1
Query:    1 LHPKDVLGWWATKGKNQFPALAPVAQQVFGNQASAAQIERDFSGCGNLLPPNRSRMDTYWVEMVMFLKANFDHIPAYGAIPMVAPKDIR 267
            L  ++VL WW   GKN FP LAPVAQQVFGNQA+ +Q+ERDFSG G LL PNRSRMDTYWVE+VMFL ANF HIP    IPMVA K+IR
Sbjct:  187 LDCREVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIR 275          
BLAST of mRNA_H-paniculata_contig81430.16167.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 4.140e-36
Identity = 59/89 (66.29%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 LHPKDVLGWWATKGKNQFPALAPVAQQVFGNQASAAQIERDFSGCGNLLPPNRSRMDTYWVEMVMFLKANFDHIPAYGAIPMVAPKDIR 267
            L  ++VL WW   G+  FP LAPVAQQV GNQA AAQ+ERDFS C NLL  NRSR+DTYWVEMVMFL  N+  IPA+  IPM+A KDIR
Sbjct:  100 LDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIR 188          
BLAST of mRNA_H-paniculata_contig81430.16167.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 9.390e-34
Identity = 59/89 (66.29%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 LHPKDVLGWWATKGKNQFPALAPVAQQVFGNQASAAQIERDFSGCGNLLPPNRSRMDTYWVEMVMFLKANFDHIPAYGAIPMVAPKDIR 267
            L  ++VL WW   G+  FP LAPVAQQV GNQA AAQ+ERDFS C NLL  NRSR+DTYWVEMVMFL  N+  IPA+  IPM+A KDIR
Sbjct:  498 LDTREVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIR 586          
BLAST of mRNA_H-paniculata_contig81430.16167.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.260e-32
Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 LHPKDVLGWWATKGKNQFPALAPVAQQVFGNQASAAQIERDFSGCGNLLPPNRSRMDTYWVEMVMFLKANFDHIPAYGAIPMVAPKDIR 267
            LHP +VL +WAT G++ FPAL  VAQQ FG+Q SAA +ERDFSGCG  L PNRSR++ YWVEMVMFL ANF  IP Y  IP +  KDIR
Sbjct:  727 LHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIR 815          
BLAST of mRNA_H-paniculata_contig81430.16167.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.310e-31
Identity = 53/72 (73.61%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   52 FPALAPVAQQVFGNQASAAQIERDFSGCGNLLPPNRSRMDTYWVEMVMFLKANFDHIPAYGAIPMVAPKDIR 267
            FP LAPVAQQV GNQA AAQ+ERDFS C NLL  NRSR+DTYWVEMVMFL  N+  IPA+  IPM+A KDIR
Sbjct:    2 FPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIR 73          
BLAST of mRNA_H-paniculata_contig81430.16167.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 7.010e-28
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   13 DVLGWWATKGKNQFPALAPVAQQVFGNQASAAQIERDFSGCGNLLPPNRSRMDTYWVEMVMFLKANFDHIPAYGAIPMVAPKDIR 267
            +VL +W   GK+ FP+L  VAQQ FGNQASAA +ERDFSGCG  + PNRSR+D YWVEMVMFLKANF+       IP + PKDIR
Sbjct:  389 EVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANFNSSRRIN-IPQIDPKDIR 472          
BLAST of mRNA_H-paniculata_contig81430.16167.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.480e-26
Identity = 53/89 (59.55%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 LHPKDVLGWWATKGKNQFPALAPVAQQVFGNQASAAQIERDFSGCGNLLPPNRSRMDTYWVEMVMFLKANFDHIPAYGAIPMVAPKDIR 267
            L P DVL +W   GK  FP+L  VAQQ FG+QASAAQIERDFS CG     NRSR + YW+EMVM LK N++ IP Y  IP +  KDIR
Sbjct:  487 LPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELIPDYKDIPSIDSKDIR 575          
BLAST of mRNA_H-paniculata_contig81430.16167.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.680e-26
Identity = 54/89 (60.67%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 LHPKDVLGWWATKGKNQFPALAPVAQQVFGNQASAAQIERDFSGCGNLLPPNRSRMDTYWVEMVMFLKANFDHIPAYGAIPMVAPKDIR 267
            L P+DVL +W   G++ FPAL  VAQQ FG+QA AAQIERDFS  G L   NR+R+D YWVEMV+FLKANF  IP Y  IP +  K IR
Sbjct:  382 LQPRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIR 470          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81430.16167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGJ7_9PHAE5.430e-4482.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSA7_9PHAE2.250e-4069.66Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE2.320e-3670.79Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE4.140e-3666.29Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KZ46_9PHAE9.390e-3466.29Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJJ9_9PHAE3.260e-3265.17Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KP16_9PHAE5.310e-3173.61Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE7.010e-2863.53Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE3.480e-2659.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE4.680e-2660.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81430contigH-paniculata_contig81430:165..431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.4383018-CDS-H-paniculata_contig81430:164..4311622931020.4383018-CDS-H-paniculata_contig81430:164..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81430 165..431 -
1691481553.8177676-CDS-H-paniculata_contig81430:164..4311691481553.8177676-CDS-H-paniculata_contig81430:164..431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81430 165..431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81430.16167.1prot_H-paniculata_contig81430.16167.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig81430 165..431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig81430.16167.1

>prot_H-paniculata_contig81430.16167.1 ID=prot_H-paniculata_contig81430.16167.1|Name=mRNA_H-paniculata_contig81430.16167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
LHPKDVLGWWATKGKNQFPALAPVAQQVFGNQASAAQIERDFSGCGNLLP
PNRSRMDTYWVEMVMFLKANFDHIPAYGAIPMVAPKDIR
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mRNA from alignment at H-paniculata_contig81430:165..431-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig81430.16167.1 ID=mRNA_H-paniculata_contig81430.16167.1|Name=mRNA_H-paniculata_contig81430.16167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig81430:165..431- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCATCCGAAGGACGTGCTCGGTTGGTGGGCGACCAAGGGCAAGAACCA GTTCCCCGCCCTCGCGCCTGTCGCCCAGCAGGTGTTCGGGAACCAGGCCT CTGCTGCGCAAATCGAGCGCGATTTCAGTGGGTGCGGCAACCTTCTTCCC CCGAATCGGAGCCGCATGGACACGTACTGGGTAGAGATGGTGATGTTCCT AAAGGCGAACTTCGATCACATACCCGCGTACGGTGCCATCCCCATGGTCG CTCCGAAGGATATCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig81430:165..431-

>mRNA_H-paniculata_contig81430.16167.1 ID=mRNA_H-paniculata_contig81430.16167.1|Name=mRNA_H-paniculata_contig81430.16167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig81430:165..431- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCATCCGAAGGACGTGCTCGGTTGGTGGGCGACCAAGGGCAAGAACCA
GTTCCCCGCCCTCGCGCCTGTCGCCCAGCAGGTGTTCGGGAACCAGGCCT
CTGCTGCGCAAATCGAGCGCGATTTCAGTGGGTGCGGCAACCTTCTTCCC
CCGAATCGGAGCCGCATGGACACGTACTGGGTAGAGATGGTGATGTTCCT
AAAGGCGAACTTCGATCACATACCCGCGTACGGTGCCATCCCCATGGTCG
CTCCGAAGGATATCCGCCTGCATCCGAAGGACGTGCTCGGTTGGTGGGCG
ACCAAGGGCAAGAACCAGTTCCCCGCCCTCGCGCCTGTCGCCCAGCAGGT
GTTCGGGAACCAGGCCTCTGCTGCGCAAATCGAGCGCGATTTCAGTGGGT
GCGGCAACCTTCTTCCCCCGAATCGGAGCCGCATGGACACGTACTGGGTA
GAGATGGTGATGTTCCTAAAGGCGAACTTCGATCACATACCCGCGTACGG
TGCCATCCCCATGGTCGCTCCGAAGGATATCCGC
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