mRNA_H-paniculata_contig8141.16164.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8141.16164.1
Unique NamemRNA_H-paniculata_contig8141.16164.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8141.16164.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.990e-19
Identity = 48/96 (50.00%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:  145 DEVEVDITIGSKSFAPH-------TFNGKMPWLVEEKVVVQQDGASPHTGKGTPRKLKLAGREDGWNLKLVT*PAQSPGLNINDFG-FSHHRNLVW 408
            +E E D TI ++ +              KMPWL  ++VVVQQDGASPHTGKG P  L  AG   GW ++LVT PAQSP LNIND G F+  +  VW
Sbjct:  258 EEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVW 353
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BLAST of mRNA_H-paniculata_contig8141.16164.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236)

HSP 1 Score: 53.9 bits (128), Expect = 9.160e-6
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:  208 KMPWLVEEKVVVQQDGASPHTGKGTPRKLKLAGREDGWNLKLVT*PAQSPGLNINDFGF 384
            K P  + +++ +QQD A  H  +G     K A  ++G+N+KL+  PAQSP LN+ D GF
Sbjct:  117 KWPAGLSKEIFIQQDNARAHI-QGNDEAFKAAATQNGFNIKLIQQPAQSPDLNVLDLGF 174
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BLAST of mRNA_H-paniculata_contig8141.16164.1 vs. uniprot
Match: V9ERX1_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=V9ERX1_PHYPR)

HSP 1 Score: 52.4 bits (124), Expect = 4.050e-5
Identity = 27/62 (43.55%), Postives = 34/62 (54.84%), Query Frame = 1 
Query:  208 KMPWLVEEK---VVVQQDGASPHTGKGTPRKLKLAGREDGWNLKLVT*PAQSPGLNINDFGF 384
            K  W  ++K   + +QQD A PH       ++  AG  DGW +KLV  PAQSP LN  D GF
Sbjct:  257 KAKWPQDQKRLPIKIQQDNARPHV-LADDLEVAAAGCADGWAIKLVNQPAQSPDLNCLDLGF 317
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BLAST of mRNA_H-paniculata_contig8141.16164.1 vs. uniprot
Match: UPI000B8A8D67 (uncharacterized protein LOC110790078 n=2 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A8D67)

HSP 1 Score: 51.6 bits (122), Expect = 6.690e-5
Identity = 24/66 (36.36%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:  208 KMPWLVEEKVVVQQDGASPHTGKGTPRKLKLAGREDGWNLKLVT*PAQSPGLNINDFGFSHHRNLV 405
            K P    +++ +QQD A PH       + K A  +DG+N++L+  PAQSP +N+ D GF     L+
Sbjct:  134 KWPLGACKEIWIQQDNARPHI-HAEDTQFKEAATKDGFNIRLINQPAQSPDMNVLDLGFFRTIQLI 198
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BLAST of mRNA_H-paniculata_contig8141.16164.1 vs. uniprot
Match: UPI000B8AF499 (uncharacterized protein LOC110800263 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF499)

HSP 1 Score: 51.2 bits (121), Expect = 9.070e-5
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:  208 KMPWLVEEKVVVQQDGASPHTGKGTPRKLKLAGREDGWNLKLVT*PAQSPGLNINDFGF 384
            K P    + + +QQD A PH      R+   A  +DG+N++LV  PAQSP +NI D GF
Sbjct:  134 KWPSNACKDIWIQQDNARPHISPND-REFLEAATQDGFNIRLVNQPAQSPDMNILDLGF 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8141.16164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE6.990e-1950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00053F72369.160e-640.68uncharacterized protein LOC104908485 n=1 Tax=Beta ... [more]
V9ERX1_PHYPR4.050e-543.55Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
UPI000B8A8D676.690e-536.36uncharacterized protein LOC110790078 n=2 Tax=Spina... [more]
UPI000B8AF4999.070e-542.37uncharacterized protein LOC110800263 n=1 Tax=Spina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8141contigH-paniculata_contig8141:10179..10612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size435
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.1611345-CDS-H-paniculata_contig8141:10178..105201622931020.1611345-CDS-H-paniculata_contig8141:10178..10520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8141 10179..10520 +
1691481553.6956503-CDS-H-paniculata_contig8141:10178..105201691481553.6956503-CDS-H-paniculata_contig8141:10178..10520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8141 10179..10520 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.189944-UTR-H-paniculata_contig8141:10520..106121622931020.189944-UTR-H-paniculata_contig8141:10520..10612Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8141 10521..10612 +
1691481553.7102535-UTR-H-paniculata_contig8141:10520..106121691481553.7102535-UTR-H-paniculata_contig8141:10520..10612Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8141 10521..10612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8141.16164.1prot_H-paniculata_contig8141.16164.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8141 10179..10520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8141.16164.1

>prot_H-paniculata_contig8141.16164.1 ID=prot_H-paniculata_contig8141.16164.1|Name=mRNA_H-paniculata_contig8141.16164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
EPNRPKSVENHGFPFFRELFFHLYVEFPTSNGANEVSRSYQAARRERSDE
VEVDITIGSKSFAPHTFNGKMPWLVEEKVVVQQDGASPHTGKGTPRKLKL
AGREDGWNLKLVT*
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mRNA from alignment at H-paniculata_contig8141:10179..10612+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8141.16164.1 ID=mRNA_H-paniculata_contig8141.16164.1|Name=mRNA_H-paniculata_contig8141.16164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=434bp|location=Sequence derived from alignment at H-paniculata_contig8141:10179..10612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCGAATAGGCCGAAATCGGTTGAAAATCATGGTTTTCCATTTTTTCG
CGAATTATTTTTTCACCTGTACGTAGAATTTCCAACAAGCAACGGCGCAA
ATGAGGTCTCTCGATCATACCAAGCTGCTCGCCGCGAAAGGTCTGACGAG
GTCGAGGTCGACATCACCATCGGCAGCAAATCGTTTGCTCCCCACACATT
CAACGGAAAAATGCCATGGTTGGTGGAGGAGAAAGTGGTCGTGCAGCAGG
ACGGCGCGAGCCCGCACACGGGCAAGGGCACGCCGAGGAAGCTAAAACTG
GCAGGAAGGGAGGATGGATGGAACCTCAAGCTCGTAACGTAGCCGGCGCA
GTCTCCTGGTCTCAATATCAATGATTTTGGGTTTTCGCATCACCGAAATC
TAGTGTGGAGGGAGCGCAACCGTGTACGTTAGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig8141:10179..10612+

>mRNA_H-paniculata_contig8141.16164.1 ID=mRNA_H-paniculata_contig8141.16164.1|Name=mRNA_H-paniculata_contig8141.16164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig8141:10179..10612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCGAATAGGCCGAAATCGGTTGAAAATCATGGTTTTCCATTTTTTCG
CGAATTATTTTTTCACCTGTACGTAGAATTTCCAACAAGCAACGGCGCAA
ATGAGGTCTCTCGATCATACCAAGCTGCTCGCCGCGAAAGGTCTGACGAG
GTCGAGGTCGACATCACCATCGGCAGCAAATCGTTTGCTCCCCACACATT
CAACGGAAAAATGCCATGGTTGGTGGAGGAGAAAGTGGTCGTGCAGCAGG
ACGGCGCGAGCCCGCACACGGGCAAGGGCACGCCGAGGAAGCTAAAACTG
GCAGGAAGGGAGGATGGATGGAACCTCAAGCTCGTAACGTAGGAGCCGAA
TAGGCCGAAATCGGTTGAAAATCATGGTTTTCCATTTTTTCGCGAATTAT
TTTTTCACCTGTACGTAGAATTTCCAACAAGCAACGGCGCAAATGAGGTC
TCTCGATCATACCAAGCTGCTCGCCGCGAAAGGTCTGACGAGGTCGAGGT
CGACATCACCATCGGCAGCAAATCGTTTGCTCCCCACACATTCAACGGAA
AAATGCCATGGTTGGTGGAGGAGAAAGTGGTCGTGCAGCAGGACGGCGCG
AGCCCGCACACGGGCAAGGGCACGCCGAGGAAGCTAAAACTGGCAGGAAG
GGAGGATGGATGGAACCTCAAGCTCGTAACGTAG
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