mRNA_H-paniculata_contig8111.16133.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8111.16133.1
Unique NamemRNA_H-paniculata_contig8111.16133.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8111.16133.1 vs. uniprot
Match: D7FUT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT3_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 2.280e-81
Identity = 171/382 (44.76%), Postives = 221/382 (57.85%), Query Frame = 2 
Query:  146 DGEACLNLAEELFVSCRFTEAVKVCNNALTGYYSSCDRT------------RPPASSAAHAGNASDALVSFEDLLIAPIGACDTSDLLVAVLLQCGFELGRLEEWGRCRTFYEVRGAMPFAIAMLWLRLRLAGGEVDLVRRVLWPLRAELSKTQQRFSVAREDRSEGKRELDQHHN--INTARTNYAEVMGTLIVQIMLPSGESADALSLVTSDPHLELKQKSLLMETCAASAATRSRELKPRDGSGPIDGRYSSESNRGDVGGQPGA----------QELAASHEREGPA-----------------EQTMRPVGSAGSLFSGFSELTPEARIVFLFAAGAAGLATYAACRRRQSLWRAVRNAAGLARRTAGDLGTFIVGS 1168
            D EA L+LAEELFVSCRFTEA +VC+ A+ G  SSC  +                SS +H    S  +V+F+D +IAP+G C TSDL+VAVLLQCGFEL R EEWGRCR FY    A+PFA+A+LWLRLRLAGGE++LVRR+LW LRAEL +  +R + A    +    + ++ H+  +  A  NY+E    L+VQIM+P GE  +A +LV+SD +L  K KS L++ C  SA+ R RE     G G      ++ S      G+ G           +E     +R+G                   +Q  +        FS  S+ TPEAR+  +  AGAAGLA YAA R R SLWRA RNAAG+A RTAGD+G FIVGS
Sbjct:   21 DQEAKLDLAEELFVSCRFTEAARVCS-AVLGEGSSCTSSPRRNFSSTSTXXXXXTSSGSHDPAGSALVVAFDDQVIAPVGECGTSDLIVAVLLQCGFELQRTEEWGRCRAFYGTTRAIPFAVAILWLRLRLAGGELELVRRILWQLRAELGEEVRRCTPAV---TANNSDFERAHSGAVTPAVANYSEATEMLVVQIMVPCGEFTEAEALVSSDAYLSPKDKSQLLKACEQSASERERESGAATGEGSTGNASNTASGSRSPCGRGGPSHSSYREDYREETKGGPQRDGRTRLEHSSSPDELGAAFCHQQRQQQQSPLQKFFSDVSDWTPEARVQLVVGAGAAGLAAYAALRNRDSLWRAARNAAGVAARTAGDVGAFIVGS 398
[Close]
BLAST of mRNA_H-paniculata_contig8111.16133.1 vs. uniprot
Match: A0A6H5K3P0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3P0_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 4.530e-71
Identity = 159/378 (42.06%), Postives = 207/378 (54.76%), Query Frame = 2 
Query:  146 DGEACLNLAEELFVSCRFTEAVKVCNNALT----------GYYSSCDRTRPPASSAAHAGNASDALVSFEDLLIAPIGACDTSDLLVAVLLQCGFELGRLEEWGRCRTFYEVRGAMPFAIAMLWLRLRLAGGEVDLVRRVLWPLRAELSKTQQRFSVAREDRSEGKRELDQHHNINTARTNYAEVMGTLIVQIMLPSGESADALSLVTSDPHLELKQKSLLMETCAASAATRSREL--------------------KPRDGSGPIDGRYSSESNRGDVGGQPGAQ----ELAASHEREGPA---EQTMRPVGSAGSLFSGFSELTPEARIVFLFAAGAAGLATYAACRRRQSLWRAVRNAAGLARRTAGDLGTFIVGS 1168
            D EA L+LAEELFVSCRFTEA  +C+ AL+           + S+           +H    S  +V+  D +IAP+G C TSDL+VAVLLQCGFEL R EEW RCR FY    A+PFA+A+LWLRLRLAGGE++LVR+ L  LRA L +  +R +      +   +  D    +  A  NY+E    L+VQI++P GE  +A++LV+SD +L  K KS L++ C  SA+ R RE                      P    GP+   Y  +      GG    +    E  +S +  G A   +Q  +        FS  S+ TPEAR+     AGAAGLA YAA R R SLWRA R+ AG+A RTAGD+G FIVGS
Sbjct:   21 DQEAKLDLAEELFVSCRFTEAATICSTALSEDSSYTSPNSNFSSTXXXXXXXXXXGSHDSAGSALVVAIGDHVIAPVGECGTSDLIVAVLLQCGFELQRTEEWARCRAFYGTTRAVPFAVAILWLRLRLAGGELELVRKNLSQLRAVLGEEVRRCTPTVTANNSDFQRADSRA-VTQALANYSEATEMLVVQILVPCGEFTEAVALVSSDDYLSPKDKSQLLKACEQSASERERESGALAGEGATGNASNTPARSRSPCGRGGPLHSSYRGDCREETAGGPQRDRRTRLENLSSPDALGAAFCRQQRQQQQSPLQKFFSDVSDWTPEARVQLAVRAGAAGLAAYAALRNRDSLWRAARSVAGVAARTAGDVGAFIVGS 397
[Close]
BLAST of mRNA_H-paniculata_contig8111.16133.1 vs. uniprot
Match: A0A835YP76_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP76_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.190e-18
Identity = 74/225 (32.89%), Postives = 110/225 (48.89%), Query Frame = 2 
Query:  155 ACLNLAEELFVSCRFTEAVKVCNNALTG-YYSSCDRTRPPASSAAHAGNASDALVSFEDLLIAPIGACDTSDLLVAVLLQCGFELGRLEEWGRCRTFYEVRGA---MPFAIAMLWLRLRLAGGEVDLVRRVLWPLRAELSKTQQRFSVAREDRSEGKRELDQHHNINTARTNYAEVMGTLIVQIMLPSGESADA---LSLVTSDPHLELKQKSLLMETCAASAAT 808
            A L+ AE   VSCRF EA  +C   L    +   + T  P SS++ + +  D  V+  DL           D L+AVLLQCGFELGR  E+  C ++Y+ R     +P AIA+LWL+LRL  GE++  R+ L  +R  L          R+D S                 +YA++   L+  ++LP+G+ A A   LS  T   H+E +  + ++    A+A T
Sbjct:    1 AVLDAAEAALVSCRFAEASSLCREHLEATLHPDGNGTSTPVSSSSTSLHLGDLSVAVADL--------QECDQLIAVLLQCGFELGRKNEYRFCHSYYKSRALKHPIPLAIALLWLKLRLEEGELEFTRQALQDMRTAL----------RDDPS--------------GTHSYAQISEMLVADVLLPAGDFAAAKHVLSESTVSAHMEPELLTAMLHAAYAAADT 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8111.16133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUT3_ECTSI2.280e-8144.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3P0_9PHAE4.530e-7142.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YP76_9STRA1.190e-1832.89Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8111contigH-paniculata_contig8111:6609..9133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_001000.1
Exons2
Model size1197
Cds size1092
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8111.16133.1prot_H-paniculata_contig8111.16133.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8111 6688..9107 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.5492852-UTR-H-paniculata_contig8111:6608..66871622931016.5492852-UTR-H-paniculata_contig8111:6608..6687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8111 6609..6687 +
1691481552.0427146-UTR-H-paniculata_contig8111:6608..66871691481552.0427146-UTR-H-paniculata_contig8111:6608..6687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8111 6609..6687 +
1622931016.5975833-UTR-H-paniculata_contig8111:9107..91331622931016.5975833-UTR-H-paniculata_contig8111:9107..9133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8111 9108..9133 +
1691481552.0809286-UTR-H-paniculata_contig8111:9107..91331691481552.0809286-UTR-H-paniculata_contig8111:9107..9133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8111 9108..9133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.5658264-CDS-H-paniculata_contig8111:6687..70941622931016.5658264-CDS-H-paniculata_contig8111:6687..7094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8111 6688..7094 +
1691481552.0543592-CDS-H-paniculata_contig8111:6687..70941691481552.0543592-CDS-H-paniculata_contig8111:6687..7094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8111 6688..7094 +
1622931016.580033-CDS-H-paniculata_contig8111:8422..91071622931016.580033-CDS-H-paniculata_contig8111:8422..9107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8111 8423..9107 +
1691481552.0640795-CDS-H-paniculata_contig8111:8422..91071691481552.0640795-CDS-H-paniculata_contig8111:8422..9107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8111 8423..9107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8111.16133.1

>prot_H-paniculata_contig8111.16133.1 ID=prot_H-paniculata_contig8111.16133.1|Name=mRNA_H-paniculata_contig8111.16133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=364bp
MTVEGGKDVVGTSLLDDGGKADDGEACLNLAEELFVSCRFTEAVKVCNNA
LTGYYSSCDRTRPPASSAAHAGNASDALVSFEDLLIAPIGACDTSDLLVA
VLLQCGFELGRLEEWGRCRTFYEVRGAMPFAIAMLWLRLRLAGGEVDLVR
RVLWPLRAELSKTQQRFSVAREDRSEGKRELDQHHNINTARTNYAEVMGT
LIVQIMLPSGESADALSLVTSDPHLELKQKSLLMETCAASAATRSRELKP
RDGSGPIDGRYSSESNRGDVGGQPGAQELAASHEREGPAEQTMRPVGSAG
SLFSGFSELTPEARIVFLFAAGAAGLATYAACRRRQSLWRAVRNAAGLAR
RTAGDLGTFIVGS*
back to top

mRNA from alignment at H-paniculata_contig8111:6609..9133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8111.16133.1 ID=mRNA_H-paniculata_contig8111.16133.1|Name=mRNA_H-paniculata_contig8111.16133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2525bp|location=Sequence derived from alignment at H-paniculata_contig8111:6609..9133+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGCACACATTTTGCGAAGTCTGGCTAACGTCTCGAGTCGGGACATCGG
CGTCATCGTGCGAACAGGACGAACCCAAGATGACGGTGGAAGGAGGGAAA
GATGTGGTGGGAACGTCACTGCTGGATGATGGTGGTAAAGCAGATGATGG
AGAGGCATGCCTTAACCTTGCCGAGGAACTGTTCGTCTCGTGCCGTTTTA
CTGAAGCTGTCAAGGTCTGCAACAACGCCTTGACGGGGTACTACAGCTCC
TGCGACCGTACTCGACCTCCCGCGTCATCAGCAGCTCACGCAGGCAACGC
CTCGGACGCGCTGGTATCATTTGAAGATTTGCTGATTGCCCCTATCGGTG
CTTGCGATACTTCTGATTTACTCGTTGCCGTGCTCTTGCAATGCGGGTTT
GAGCTAGGGCGACTGGAAGAGTGGGGTCGTTGCCGAACGTTCTACGAGGT
TCGTGGAGCTATGCCGTTCGCCATAGCCATGCTCTGGTGAGTCGTTGTGC
AGACCAACAGCAGTGTAGCTGCATCCATAGAGAGCTACCGTATTACACCG
AGCTAAATACGTGTTAGGTTTATCGTTTTATTTAATCTCGTGGTCATACA
GATTTAACTAGGCGTTACACGTTGGCCGACTATGACTAACATTAGGTGGC
AGTCGTTGTCATTGTGTTTTTATTTTATTTTATTGTTCGGCTGATTATTC
GCACCAATCGAGTGGTGGTCGACTTTGTTTTGAATTGACTTGACTAGCAG
TCGAGTGGTAGTTGACTTTACTTTGAATGAACTTGATTGCTAGTCGAATG
GTAGTCGACTTCATTTCGATAGATTCTACTACCAATCGACGGGTAGTTGA
CTTCAGCTCAATGGACTCGAGTATCAATTGTTAGCTAGTCGACCCCATTT
TCGGAATTCAGTCGCACCAGTCGATTGCTGGTCGAATTGATGGTACAACA
GCAACTATCAGTCGGGTTAACATCGGGGAATCAGTCAGTCGTCAAAGGAT
CACTCCCAGTGGTCCGAATGTCGCAATGATCGCATTAACCCGAGCTCAGT
CACGCCACACATCATCAGTTAATCAATCGTTACACAATATTTTGAGGTTG
ATATAGATAGTAAATACCTGGACCAGACTTCGTCTACCCTGTTAATCGTC
AAAGCTATTAATAGAAACCCGCAACAAGCTTGCTCTCCAGGCGTACACCT
TTGAATTAGAAAGGGCGGTGGACTGATGTGTGTGTTGTCGCGAACATCTC
TAAGTTGATAACTTTGCCTTTACTTCAAAGACCCTCCACCATTTCTTGTG
CATAGCACAGAGGTACTTGGATGAACAGTCCTGGCGATCACTCCAATCGC
ATCTCTTAAATACGAATACGTTATCCTTTACTATGAATTGTTCCAGTATA
AGTTCCGCTGCTCAGTGGATTTGCGATGGTGTACACTCGATTTGACAATG
GTCAACCACGTCTATGTTTCCCTACTCTACAGGCTGACCGTCTCGCCGTT
GATAGTTGCTACCTTTCACCCTGTCGGTATCCAATGACTGCAGATGCGCA
GTGCATACGGCCTCCGTGAAATTGTGCTCCAGAGGCAGTCAACCTTGGTT
ATTTCATGACTTGACGTTGCCCACGTACCAGCCAAAAATGGCATGGTGCC
AGTCAACGCTTATTTCTTCTCATGGTTGAGCGGTCTATCATCACTGTACA
AATGTAGTTACATCTGGCACAATATCACAGCAGTTTTATTTGCATAACTC
TCAGTCATTGATGGTATATGCGCGACATCTGGTCATCCGTCCTCTTCTCC
CTTTTCCCAATCAGGCTCCGCCTCCGTCTGGCCGGTGGCGAGGTTGATCT
CGTGCGCCGAGTTCTGTGGCCACTAAGGGCGGAGCTGAGCAAAACACAAC
AACGATTTTCGGTCGCTCGGGAGGATCGCTCGGAGGGTAAACGCGAACTA
GACCAGCACCACAATATCAACACGGCGCGAACGAATTACGCAGAGGTAAT
GGGCACATTAATTGTGCAGATTATGCTTCCTAGCGGTGAATCCGCGGACG
CGCTGTCGCTCGTGACAAGCGATCCGCATCTGGAGCTGAAGCAAAAGAGT
CTGCTCATGGAAACCTGCGCTGCATCCGCAGCCACTCGATCGAGGGAATT
GAAGCCGCGGGACGGGAGCGGGCCAATTGACGGTAGATATTCCAGCGAAT
CCAACAGGGGTGATGTAGGAGGCCAACCGGGGGCACAGGAACTTGCCGCC
TCCCACGAACGAGAGGGTCCGGCAGAACAAACGATGAGACCAGTTGGTTC
GGCAGGGAGTTTGTTTTCCGGGTTTTCAGAGCTCACGCCCGAAGCTCGGA
TTGTTTTTCTTTTTGCGGCCGGGGCTGCCGGTTTGGCAACTTACGCGGCG
TGCCGAAGACGACAGTCTTTGTGGCGTGCTGTGCGGAACGCGGCTGGGCT
GGCTAGGAGAACAGCGGGGGACCTTGGAACATTTATTGTCGGCTCGTGAG
CTGTATGTACTCACACGAAGCCACT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8111:6609..9133+

>mRNA_H-paniculata_contig8111.16133.1 ID=mRNA_H-paniculata_contig8111.16133.1|Name=mRNA_H-paniculata_contig8111.16133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2184bp|location=Sequence derived from alignment at H-paniculata_contig8111:6609..9133+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGTGGAAGGAGGGAAAGATGTGGTGGGAACGTCACTGCTGGATGA
TGGTGGTAAAGCAGATGATGGAGAGGCATGCCTTAACCTTGCCGAGGAAC
TGTTCGTCTCGTGCCGTTTTACTGAAGCTGTCAAGGTCTGCAACAACGCC
TTGACGGGGTACTACAGCTCCTGCGACCGTACTCGACCTCCCGCGTCATC
AGCAGCTCACGCAGGCAACGCCTCGGACGCGCTGGTATCATTTGAAGATT
TGCTGATTGCCCCTATCGGTGCTTGCGATACTTCTGATTTACTCGTTGCC
GTGCTCTTGCAATGCGGGTTTGAGCTAGGGCGACTGGAAGAGTGGGGTCG
TTGCCGAACGTTCTACGAGGTTCGTGGAGCTATGCCGTTCGCCATAGCCA
TGCTCTGATGACGGTGGAAGGAGGGAAAGATGTGGTGGGAACGTCACTGC
TGGATGATGGTGGTAAAGCAGATGATGGAGAGGCATGCCTTAACCTTGCC
GAGGAACTGTTCGTCTCGTGCCGTTTTACTGAAGCTGTCAAGGTCTGCAA
CAACGCCTTGACGGGGTACTACAGCTCCTGCGACCGTACTCGACCTCCCG
CGTCATCAGCAGCTCACGCAGGCAACGCCTCGGACGCGCTGGTATCATTT
GAAGATTTGCTGATTGCCCCTATCGGTGCTTGCGATACTTCTGATTTACT
CGTTGCCGTGCTCTTGCAATGCGGGTTTGAGCTAGGGCGACTGGAAGAGT
GGGGTCGTTGCCGAACGTTCTACGAGGTTCGTGGAGCTATGCCGTTCGCC
ATAGCCATGCTCTGGCTCCGCCTCCGTCTGGCCGGTGGCGAGGTTGATCT
CGTGCGCCGAGTTCTGTGGCCACTAAGGGCGGAGCTGAGCAAAACACAAC
AACGATTTTCGGTCGCTCGGGAGGATCGCTCGGAGGGTAAACGCGAACTA
GACCAGCACCACAATATCAACACGGCGCGAACGAATTACGCAGAGGTAAT
GGGCACATTAATTGTGCAGATTATGCTTCCTAGCGGTGAATCCGCGGACG
CGCTGTCGCTCGTGACAAGCGATCCGCATCTGGAGCTGAAGCAAAAGAGT
CTGCTCATGGAAACCTGCGCTGCATCCGCAGCCACTCGATCGAGGGAATT
GAAGCCGCGGGACGGGAGCGGGCCAATTGACGGTAGATATTCCAGCGAAT
CCAACAGGGGTGATGTAGGAGGCCAACCGGGGGCACAGGAACTTGCCGCC
TCCCACGAACGAGAGGGTCCGGCAGAACAAACGATGAGACCAGTTGGTTC
GGCAGGGAGTTTGTTTTCCGGGTTTTCAGAGCTCACGCCCGAAGCTCGGA
TTGTTTTTCTTTTTGCGGCCGGGGCTGCCGGTTTGGCAACTTACGCGGCG
TGCCGAAGACGACAGTCTTTGTGGCGTGCTGTGCGGAACGCGGCTGGGCT
GGCTAGGAGAACAGCGGGGGACCTTGGAACATTTATTGTCGGCTCGTGAG
CTCCGCCTCCGTCTGGCCGGTGGCGAGGTTGATCTCGTGCGCCGAGTTCT
GTGGCCACTAAGGGCGGAGCTGAGCAAAACACAACAACGATTTTCGGTCG
CTCGGGAGGATCGCTCGGAGGGTAAACGCGAACTAGACCAGCACCACAAT
ATCAACACGGCGCGAACGAATTACGCAGAGGTAATGGGCACATTAATTGT
GCAGATTATGCTTCCTAGCGGTGAATCCGCGGACGCGCTGTCGCTCGTGA
CAAGCGATCCGCATCTGGAGCTGAAGCAAAAGAGTCTGCTCATGGAAACC
TGCGCTGCATCCGCAGCCACTCGATCGAGGGAATTGAAGCCGCGGGACGG
GAGCGGGCCAATTGACGGTAGATATTCCAGCGAATCCAACAGGGGTGATG
TAGGAGGCCAACCGGGGGCACAGGAACTTGCCGCCTCCCACGAACGAGAG
GGTCCGGCAGAACAAACGATGAGACCAGTTGGTTCGGCAGGGAGTTTGTT
TTCCGGGTTTTCAGAGCTCACGCCCGAAGCTCGGATTGTTTTTCTTTTTG
CGGCCGGGGCTGCCGGTTTGGCAACTTACGCGGCGTGCCGAAGACGACAG
TCTTTGTGGCGTGCTGTGCGGAACGCGGCTGGGCTGGCTAGGAGAACAGC
GGGGGACCTTGGAACATTTATTGTCGGCTCGTGA
back to top