mRNA_H-paniculata_contig8108.16128.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8108.16128.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 133 bits (335), Expect = 6.590e-32 Identity = 96/273 (35.16%), Postives = 141/273 (51.65%), Query Frame = 1
Query: 1 VYVSDTGHHFNNHLFSLLANALGAEHHFSVANSAWSNGTVEWMNREVINTLKAVLNEANRPVREWLAAVPVPVVQVG----------PKHGALG---------WLDNNGDESRVEDLDVPHERMKGLVEDWVKSQEAARRKVLQRVRRYTPKLFGTS---------TGPSRVVWGGSAHVYKVEEIVTGPTKDVHAVRMRPFADKSLGVGMDVWAMFEEAKHQGEFEIADIVDIGEDPVQEGENM-VLVEWMGLDAAEERSWEAVSTIHENVP 732
V+VSDT HF NH+ + L ALG + +FSVANS WSNGT E M REV+ TLKA++ E R+W+ VP + P H G + G E +V+ LD R+K V+ V++Q ++VL +V+ K ++ G +V HVY V+ IV+G +DVH R+R +AD +L + ++ +F+ A QGEFE+A IVD+ ++G V VEW+G D EE +WE +S + + P
Sbjct: 1433 VWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAPRTALSTLASSTGAEWKVDVLDEKSLRLK--VQHVVEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYVIVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMS--VAEDGPGFDVEVEWVGFDK-EENTWEELSKMWDAAP 1700
BLAST of mRNA_H-paniculata_contig8108.16128.1 vs. uniprot
Match: A0A2P4XSG7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XSG7_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 4.840e-20 Identity = 77/266 (28.95%), Postives = 120/266 (45.11%), Query Frame = 1
Query: 4 YVSDTGHHFNNHLFSLLANALGAEHHFSVANSAWSNGTVEWMNREVINTLKAVLNEANRPVREWLAAVPVPVVQVGPKHGALGWLDNNGDESRVEDLDVPHERMKGLVEDWVKS---QEAARRKVLQRVRRYTPKLFGTST--------------------GPSRVVWGGSAHVYKVEEIVTGPTKDVHAVRMRPFADKSLGVGMDVWAMFEEAKHQGEFEIADIVDIGEDPVQEGENMVLVEWMGLDAAEERSWEAVSTIHENVP 732
+VSD G HF N + L +ALGA HHF+ A W+NGTVE +NREV+ +A+L+E EW + + VQ+ H +D + + L + V D ++ E RRK + T F GP++V S ++++E ++TG ++VHA R++ +AD SL V D + H E + D + QE + + V W GL AE+ SWE + + ++VP
Sbjct: 189 WVSDQGTHFKNKVIEGLQHALGAHHHFTTARCPWANGTVEVVNREVLRCCRALLSEWRLQSGEWPRVIKI--VQMVLNHSPCSAIDGVAPVTAMTGLKAMNPTDPLAVPDPIQVATLDEIQRRKHHNGKKGTTMAQFDVGDFVLYADVWQHARAKLRVKWCGPAQVTAATSNWIFEIENLITGERREVHASRLKFYADSSLEVTED---LLRHVAHNSEGHVVDSLLAARYNAQEKRHELKVHWRGLAEAED-SWEPAAVLLQDVP 448
BLAST of mRNA_H-paniculata_contig8108.16128.1 vs. uniprot
Match: A0A2P4WXA7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXA7_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.640e-17 Identity = 73/261 (27.97%), Postives = 115/261 (44.06%), Query Frame = 1
Query: 1 VYVSDTGHHFNNHLFSLLANALGAEHHFSVANSAWSNGTVEWMNREVINTLKAVLNEANRPVREWLAAVPVPVVQVGPKHGALGWLDNNGDESRVEDLDVPHERMKGLVEDWVKSQEAARRKVLQRVRRYTPKLFGTST------------------GPSRVVWGGSAHVYKVEEIVTGPTKDVHAVRMRPFADKSLGVGMDVWAMFEEAKHQGEFEIADIVDIGEDPVQEGENMVLVEWMGLDAAEERSWEAVSTIHENV 729
++VSD G HF N + L ALGA HHF+ A W+NGTVE + REV+ +A+L+E EW + + VQ+ L+ + + + + ++ AR K +R + G GP+RVV S V+ +E ++T T++VHA R++ FAD LG+ D+ A H E + + + ++ +LV+W GL E SWE V + E+V
Sbjct: 1198 LWVSDQGTHFKNAVIQALQRALGAHHHFTTARCPWANGTVEVVMREVLRCCRALLSEWRLAEAEWPRVIKI--VQLVLNQSPSASLEGVAPVRAMTGIAAMNPVDPIITPSGQSARNKARTKSSKRGAKMAQFAIGDYVLYADVWSHRHSKLRVKWCGPARVVDTASNWVFTIENLLTRETREVHASRLKFFADSDLGITEDLLA---HVAHNSEGHVVEEIREARYDNVGKQHQLLVKWRGLGEIE-NSWEPVQNLLEDV 1452
BLAST of mRNA_H-paniculata_contig8108.16128.1 vs. uniprot
Match: A0A225VA87_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA87_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.860e-16 Identity = 80/263 (30.42%), Postives = 128/263 (48.67%), Query Frame = 1
Query: 7 VSDTGHHFNNHLFSLLANALGAEHHFSVANSAWSNGTVEWMNREVINTLKAVLNEA------------------NRPVREWLAAVPVPVVQVGPKHGALGWLDNNGD--ESRVEDLDVPHERMKGLVEDWVKSQEAARRKVLQRVRRYTPKLFGTSTGPSRVVWGGSAHVYKVEEIVTGPTKDVHAVRMRPFADKSLGVGMDVWAMFEEAKHQGEFEIAD-IVDIGEDPVQEGENMVLVEWMGLDAAEERSWEAVSTIHENVP 732
+SD G HF N + + LA L E FS S W NGTVE +NR+V+ L+A+L +A + PVR PV V P AL ++ + + +S+ + + + KG + ++ ++ QR+ + KL G GP +V+ S H +K+E +VTG DVH R++ +AD +L + + E QG D ++ +P + G +LV W+GL A E+ SWE +ST+ ++VP
Sbjct: 362 MSDQGSHFRNEMINHLAARLKIEPKFSPVYSPWLNGTVERLNRDVLQVLRALLLDALDSHEWPYLLPAIQANLNHTPVRSLAGHSPVEVFTGLPASSALDVVEMHREVVDSKEKKRLLDMQAHKGALVNFDVGDFVLWSRIDQRLPNH--KLLGQWVGPFKVIEALS-HSFKIEHLVTGRVYDVHGSRLKFYADAALNTMEE---LLELVSSQGMLLGVDKFIEHRYNP-ERGRWELLVSWLGLQAIED-SWEPLSTLLQDVP 616
BLAST of mRNA_H-paniculata_contig8108.16128.1 vs. uniprot
Match: A0A225VRY4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VRY4_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 5.420e-15 Identity = 74/282 (26.24%), Postives = 120/282 (42.55%), Query Frame = 1
Query: 1 VYVSDTGHHFNNHLFSLLANALGAEHHFSVANSAWSNGTVEWMNREVINTLKAVLNEANRPVREWLAAVPV--------PVVQVGPK--------------------HGALGWLDNNGDESRVE-----DLDVPHERMKGLVEDWVKSQEAARRKVLQRVRRYTPKLFGTSTGPSRVVWGGSAHVYKVEEIVTGPTKDVHAVRMRPFADKSLGVGMDVWAMFEEAKHQGEFEIADIVDIGEDPVQEGENMVL-----VEWMGLDAAEERSWEAVSTIHENVP 732
++VSD G HF N + S L L + F+ A W NG++E +NR+++ L+A++ E R+W+ +P+ PV + K HG L D ++E + DV ++ V+D + KL T TGP VV AH ++V +VTG DVHA R++ +AD SL + + + E QG ++ + E N + V W GL+ E+ SWE ++T+ + +P
Sbjct: 419 IWVSDNGSHFKNEVMSELRRRLKTQQQFTPAYCPWINGSIERVNRDILQVLRAMILEYKISTRDWIYLIPMVQSSLNHTPVPSLASKAPVELFTGLPCPSPLQSFYSHGKKEILQIPDDADKIEGENVVNFDVGDYVLRSRVDD-----------------KQGNKLHVTWTGPHIVV-RADAHSFRVRHLVTGDESDVHASRLKFYADNSLNITEE---LLEHVAAQGT-----VLAVNELKEHRWNNTIKDYELRVNWRGLEPIED-SWEPITTLGKEIP 673
BLAST of mRNA_H-paniculata_contig8108.16128.1 vs. uniprot
Match: A0A6A4FSE9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FSE9_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.440e-14 Identity = 78/299 (26.09%), Postives = 140/299 (46.82%), Query Frame = 1
Query: 1 VYVSDTGHHFNNHLFSLLANALGAEHHFSVANSAWSNGTVEWMNREVINTLKAVLNEANRPVREWLAAVPVPVVQVGPKHGALGWLDN--------------------NGDESRVEDL----DVPHERMKGLVEDWV---------KSQEAARRKVLQ-----------------RV-RRYTPKLFGTSTGPSRVVWGGSAHVYKVEEIVTGPTKDVHAVRMRPFADKSLGVGMDVWAMFEEAKHQGEFEIADIVDIGED----PVQEGENMVLVEWMGLDAAEERSWEAVSTIHENVP 732
++ SD G HF N + +++ L +E FSVA+S W NG++E +NR+VI LK + E + +R+W + VP+ ++ H L L N + ++ R+ +L ++ E+++ L E + ++ R+K +Q RV ++Y KL T GP ++ H++ V+ +VTG DVHA R++ +ADK V +V E QG + + ++ E ++ E +LV W GL+ E+ SWE + ++ +++P
Sbjct: 360 IWFSDHGSHFKNEVVAVIGKRLKSEQRFSVAHSPWINGSIERVNRDVIQVLKVLCLEYKKDIRDWTSFVPL--LRASINHTPLPSLGNKAPVELFCALPLPSPLDFCVDAEQKRIVELTKQPELIAEKLQQLRESVQHMHRAVAAERERQTRRKKSMQSGARKANFSVGDFVLRSRVDQKYQDKLLVTWVGPYQIK-RADKHLFVVQHLVTGVETDVHASRLKYYADKDYEVTEEVR---EHIASQGI--VLAVAELKEHRWNASIKSYE--ILVSWQGLEPIED-SWEPLRSLWKDIP 647
BLAST of mRNA_H-paniculata_contig8108.16128.1 vs. uniprot
Match: A0A2P4YHH3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHH3_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 2.840e-14 Identity = 78/261 (29.89%), Postives = 117/261 (44.83%), Query Frame = 1
Query: 1 VYVSDTGHHFNNHLFSLLANALGAEHHFSVANSAWSNGTVEWMNREVINTLKAVLNEANRPVREWLAAVPVPVVQVGPKHGALGWLDNNGDESRVEDLDVP-------HERMKGLVE--DWVKS----------------QEAARRKVLQRV--RRYTPKLFGTSTGPSRVVWGGSAHVYKVEEIVTGPTKDVHAVRMRPFADKSLGVGMDVWAMFEEAKHQGEFEIADIVDIGEDPVQEGENMVLVEWMGLDAAEERSWE 702
++VSD G HF N + + L+ L ++ HF++A S W NG+VE +NR+++ L+A+L E ++W VP+ VQ H AL L N L P H K LV D ++ Q A ++ QR + KL T GP +VV S H + + +V+G DVHA R++ +AD L V ++ E QG + + VLV W GL++ E+ SWE
Sbjct: 235 MWVSDNGSHFKNEVVAELSRRLKSQQHFTLAYSPWINGSVERVNRDILQVLRAMLLEYKISTKDWTYLVPL--VQASLNHTALPSLGNRAPVELFTGLPCPSPLAEFYHPDSKKLVTLPDTSEAIDKHLAELRASLCAMHQPIADHRLKQRRVDEKKGNKLLVTWQGPYKVVRADS-HSFGISHLVSGDESDVHASRLKFYADSQLNVTEEI---LEHIASQGIVLAVNGFKNHRWNASIKDYEVLVSWKGLESVED-SWE 488
BLAST of mRNA_H-paniculata_contig8108.16128.1 vs. uniprot
Match: A0A225VG15_9STRA (RNA-directed DNA polymerase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VG15_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 3.840e-14 Identity = 77/262 (29.39%), Postives = 118/262 (45.04%), Query Frame = 1
Query: 4 YVSDTGHHFNNHLFSLLANALGAEHHFSVANSAWSNGTVEWMNREVINTLKAVLNEANRPVREWLAAVPV--------PVVQVGPKHGALGWLDNN--------GDESRVEDLDVPHERMKGLVEDWVKSQEAARRKVLQRVRRYTPKLFGTSTGPSRVVWGGSAHVYKVEEIVTGPTKDVHAVRMRPFADKSLGVGMDVWAMFEEAKHQGEF-EIADIVD--IGEDPVQEGENMVLVEWMGLDAAEERSWEAVSTIHENVP 732
++SD G HF + LLA LG H F + W NGTVE +NR+++ L+ +L E+ R W +P+ PV+ +G + D+ + R + R KG V ++ + +V +R++ KL GP +VV AH + + I+TG DVH R++ + D L V ++ E QG E+ ++VD I D GE +LV W GL E SWE +I +VP
Sbjct: 1062 WMSDNGSHFKCQVMELLAERLGVNHQFVPVYTPWINGTVERVNRDILQVLRVMLLESRLDTRNWTHLLPIIQANLNHTPVLSLGNCAPVELFTDDYPSKLESYAAQDRREQQRLAAMARYKGAVCNFSEGDYVLWSRVDKRMQGN--KLLVRWVGPFQVV-KALAHSFLIRHILTGAEYDVHGSRLKFYHDADLEVTAEIR---EHVSLQGIILEVREVVDHRINGDT---GELELLVAWRGLQDIE-NSWEPAHSIQRDVP 1313
BLAST of mRNA_H-paniculata_contig8108.16128.1 vs. uniprot
Match: A0A225VK89_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VK89_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 7.160e-14 Identity = 77/269 (28.62%), Postives = 122/269 (45.35%), Query Frame = 1
Query: 1 VYVSDTGHHFNNHLFSLLANALGAEHHFSVANSAWSNGTVEWMNREVINTLKAVLNEANRPVREWLAAVPVPVVQVGPKHGALGWLDNNGDESRVEDLDVP-------------HERMKGLVE-----------DWVKSQEAARRKVLQRVRRYTPKLFGTSTGPSRVVWGGSAHVYKVEEIVTGPTKDVHAVRMRPFADKSLGVGMDVWAMFEEAKHQGEFEIAD-IVDIGEDPVQEGENMVLVEWMGLDAAEERSWEAVSTIHENVP 732
V+VSD+G HF + + L+ L F +A S W NG+VE +NR+++ LKA+ E V +W +P+VQ H + L N L P H+R + ++ R +V +++ + KL GP RV+ G + + + VE ++ G T DVH R++ +AD SL V + + + QG D IVD ++ + V V+W GL+ E+ SWE + TI E+VP
Sbjct: 1240 VWVSDSGSHFKCKVIAELSRRLKGRQDFILAYSPWKNGSVERVNRDILQVLKALALEFQVSVHDW--PYLLPLVQSSINHSPVPSLANRAPVELFTGLPCPSTLDTIFLPGGKGHQRTNQAKKYRNRPHYDRQVNFTVGDYVLRSRVDEKL--HANKLRVMWVGPYRVI-GSTDYYFTVEHLINGSTIDVHPSRLKFYADDSLDVTEE---LLDHIASQGTLLAVDAIVDHRKNADMKAYE-VKVKWQGLEKIED-SWEPLKTISEDVP 1498
BLAST of mRNA_H-paniculata_contig8108.16128.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 2.800e-13 Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 1 VYVSDTGHHFNNHLFSLLANALGAEHHFSVANSAWSNGTVEWMNREVINTLKAVLNEANRPVREWLAAVP 210
V+VSDT HF N + L ALG E F+VANS WSNGT E M RE++ T+KAVL E R VR+W+ VP
Sbjct: 555 VWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVP 624 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8108.16128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8108.16128.1 >prot_H-paniculata_contig8108.16128.1 ID=prot_H-paniculata_contig8108.16128.1|Name=mRNA_H-paniculata_contig8108.16128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp VYVSDTGHHFNNHLFSLLANALGAEHHFSVANSAWSNGTVEWMNREVINTback to top mRNA from alignment at H-paniculata_contig8108:5159..6046- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8108.16128.1 ID=mRNA_H-paniculata_contig8108.16128.1|Name=mRNA_H-paniculata_contig8108.16128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=888bp|location=Sequence derived from alignment at H-paniculata_contig8108:5159..6046- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8108:5159..6046- >mRNA_H-paniculata_contig8108.16128.1 ID=mRNA_H-paniculata_contig8108.16128.1|Name=mRNA_H-paniculata_contig8108.16128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1464bp|location=Sequence derived from alignment at H-paniculata_contig8108:5159..6046- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |