mRNA_H-paniculata_contig80834.16095.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig80834.16095.1
Unique NamemRNA_H-paniculata_contig80834.16095.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig80834.16095.1 vs. uniprot
Match: A0A6H5KFF2_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFF2_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 3.410e-43
Identity = 71/87 (81.61%), Postives = 80/87 (91.95%), Query Frame = 1 
Query:    1 QLEITGIGEIIKTTCTGVEMFKKLLDQGQAGDNIGALLRGIKREDVQRGQVLAAPNTVTSHKKFTAEVYVLNKDEGGRHTPFMTNYR 261
            +LEI+GIG ++KTTCTGVEMFKKLLDQGQAGDNIGALLRG+KREDVQRGQV+  PN+V+ HKKF AEVYVL KDEGGRHTPF +NYR
Sbjct:  298 ELEISGIGSVVKTTCTGVEMFKKLLDQGQAGDNIGALLRGLKREDVQRGQVIHKPNSVSVHKKFKAEVYVLTKDEGGRHTPFFSNYR 384
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BLAST of mRNA_H-paniculata_contig80834.16095.1 vs. uniprot
Match: S7TQZ3_9DELT (Elongation factor Tu n=1 Tax=Desulfovibrio sp. X2 TaxID=941449 RepID=S7TQZ3_9DELT)

HSP 1 Score: 146 bits (369), Expect = 3.020e-42
Identity = 65/87 (74.71%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 QLEITGIGEIIKTTCTGVEMFKKLLDQGQAGDNIGALLRGIKREDVQRGQVLAAPNTVTSHKKFTAEVYVLNKDEGGRHTPFMTNYR 261
            ++EI GI + +KTTCTGVEMF+K+LDQGQAGDN+GALLRG+KREDV+RGQVLAAP ++T HKKF AEVYVL+K+EGGRHTPF + YR
Sbjct:   89 EVEIVGIHDTVKTTCTGVEMFRKILDQGQAGDNVGALLRGVKREDVERGQVLAAPKSITPHKKFKAEVYVLSKEEGGRHTPFFSGYR 175
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BLAST of mRNA_H-paniculata_contig80834.16095.1 vs. uniprot
Match: A0A6P1ZGA9_9DELT (Elongation factor Tu (Fragment) n=1 Tax=Oceanidesulfovibrio marinus TaxID=370038 RepID=A0A6P1ZGA9_9DELT)

HSP 1 Score: 143 bits (360), Expect = 7.200e-42
Identity = 63/87 (72.41%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    1 QLEITGIGEIIKTTCTGVEMFKKLLDQGQAGDNIGALLRGIKREDVQRGQVLAAPNTVTSHKKFTAEVYVLNKDEGGRHTPFMTNYR 261
            ++EI G+ + +KTTCTGVEMF+K+LDQGQAGDN+G LLRGIKREDV+RGQVLA P T+T H+KF AEVYVL+K+EGGRHTPF + YR
Sbjct:   10 EIEIVGMKDTVKTTCTGVEMFRKILDQGQAGDNVGVLLRGIKREDVERGQVLARPGTITPHRKFKAEVYVLSKEEGGRHTPFFSGYR 96
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BLAST of mRNA_H-paniculata_contig80834.16095.1 vs. uniprot
Match: Q6N0C2_9PROT (Elongation factor Tu n=5 Tax=Rhodospirillaceae TaxID=41295 RepID=Q6N0C2_9PROT)

HSP 1 Score: 149 bits (376), Expect = 1.030e-41
Identity = 67/87 (77.01%), Postives = 78/87 (89.66%), Query Frame = 1 
Query:    1 QLEITGIGEIIKTTCTGVEMFKKLLDQGQAGDNIGALLRGIKREDVQRGQVLAAPNTVTSHKKFTAEVYVLNKDEGGRHTPFMTNYR 261
            ++EI GI   +KTTCTGVEMF+KLLDQG+AGDNIGALLRG+KREDV+RGQVLAAP ++T H KFTAE Y+LNK+EGGRHTPF TNYR
Sbjct:  244 EVEIVGIKPTVKTTCTGVEMFRKLLDQGEAGDNIGALLRGVKREDVERGQVLAAPGSITPHTKFTAEAYILNKEEGGRHTPFFTNYR 330
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BLAST of mRNA_H-paniculata_contig80834.16095.1 vs. uniprot
Match: A0A846QMZ3_9DELT (Elongation factor Tu n=2 Tax=Desulfobaculum xiamenense TaxID=995050 RepID=A0A846QMZ3_9DELT)

HSP 1 Score: 144 bits (364), Expect = 1.170e-41
Identity = 65/87 (74.71%), Postives = 78/87 (89.66%), Query Frame = 1 
Query:    1 QLEITGIGEIIKTTCTGVEMFKKLLDQGQAGDNIGALLRGIKREDVQRGQVLAAPNTVTSHKKFTAEVYVLNKDEGGRHTPFMTNYR 261
            ++EI GI +  KTTCTGVEMF+KLLDQG+AGDNIGALLRG+KR+DV+RGQVLAAP ++T H+KF AEVYVLNK+EGGRHTPF + YR
Sbjct:   75 EVEIVGIHDTTKTTCTGVEMFRKLLDQGEAGDNIGALLRGVKRDDVERGQVLAAPGSITPHRKFKAEVYVLNKEEGGRHTPFFSGYR 161
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BLAST of mRNA_H-paniculata_contig80834.16095.1 vs. uniprot
Match: A0A365VR13_9PSED (Elongation factor Tu (Fragment) n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A365VR13_9PSED)

HSP 1 Score: 144 bits (362), Expect = 1.830e-41
Identity = 65/87 (74.71%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 QLEITGIGEIIKTTCTGVEMFKKLLDQGQAGDNIGALLRGIKREDVQRGQVLAAPNTVTSHKKFTAEVYVLNKDEGGRHTPFMTNYR 261
            +LEI G+ + +KTTCTGVEMF+KLLDQGQAGDN+G LLRG KREDV+RGQVLA P ++T H  FTAEVYVL+KDEGGRHTPF  NYR
Sbjct:   66 ELEIVGLKDTVKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYR 152
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BLAST of mRNA_H-paniculata_contig80834.16095.1 vs. uniprot
Match: UPI00048D16BC (EF-Tu/IF-2/RF-3 family GTPase n=1 Tax=Chitinibacter tainanensis TaxID=230667 RepID=UPI00048D16BC)

HSP 1 Score: 142 bits (359), Expect = 2.870e-41
Identity = 65/87 (74.71%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    1 QLEITGIGEIIKTTCTGVEMFKKLLDQGQAGDNIGALLRGIKREDVQRGQVLAAPNTVTSHKKFTAEVYVLNKDEGGRHTPFMTNYR 261
            ++EI GI   IKTTCTGVEMF+KLLDQGQAGDNIGALLRG KRE+VQRGQVL+ P ++T H KFT+E+YVL+K+EGGRHTPF +NYR
Sbjct:   45 EIEIVGIVPTIKTTCTGVEMFRKLLDQGQAGDNIGALLRGTKREEVQRGQVLSKPGSITPHTKFTSEIYVLSKEEGGRHTPFFSNYR 131
[Close]
BLAST of mRNA_H-paniculata_contig80834.16095.1 vs. uniprot
Match: X6IVG2_9HYPH (Elongation factor Tu n=3 Tax=unclassified Mesorhizobium TaxID=325217 RepID=X6IVG2_9HYPH)

HSP 1 Score: 142 bits (357), Expect = 3.620e-41
Identity = 67/87 (77.01%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    1 QLEITGIGEIIKTTCTGVEMFKKLLDQGQAGDNIGALLRGIKREDVQRGQVLAAPNTVTSHKKFTAEVYVLNKDEGGRHTPFMTNYR 261
            +LEI GI    KTTCTGVEMF+KLLDQGQAGDNIGALLRG+ RE V+RGQVLA P TV  HKKF AE Y+L KDEGGRHTPF TNYR
Sbjct:   36 ELEIIGIRPTTKTTCTGVEMFRKLLDQGQAGDNIGALLRGVDREGVERGQVLAKPGTVKPHKKFVAEAYILTKDEGGRHTPFFTNYR 122
[Close]
BLAST of mRNA_H-paniculata_contig80834.16095.1 vs. uniprot
Match: A0A522WUV7_9PROT (Elongation factor Tu (Fragment) n=4 Tax=Rhodospirillaceae TaxID=41295 RepID=A0A522WUV7_9PROT)

HSP 1 Score: 145 bits (367), Expect = 3.950e-41
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:    1 QLEITGIGEIIKTTCTGVEMFKKLLDQGQAGDNIGALLRGIKREDVQRGQVLAAPNTVTSHKKFTAEVYVLNKDEGGRHTPFMTNYR 261
            ++EI GI   +KTTCTGVEMF+KLLDQG+AGDNIGALLRG KREDV+RGQVLAAP ++T H KF AE Y+LNK+EGGRHTPF TNYR
Sbjct:  163 EVEIVGIKNTVKTTCTGVEMFRKLLDQGEAGDNIGALLRGTKREDVERGQVLAAPGSITPHTKFKAEAYILNKEEGGRHTPFFTNYR 249
[Close]
BLAST of mRNA_H-paniculata_contig80834.16095.1 vs. uniprot
Match: S9S683_MAGFU (Elongation factor Tu (Fragment) n=1 Tax=Magnetospirillum fulvum MGU-K5 TaxID=1316936 RepID=S9S683_MAGFU)

HSP 1 Score: 144 bits (364), Expect = 6.890e-41
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 QLEITGIGEIIKTTCTGVEMFKKLLDQGQAGDNIGALLRGIKREDVQRGQVLAAPNTVTSHKKFTAEVYVLNKDEGGRHTPFMTNYR 261
            ++EI GI   +KTTCTGVEMF+KLLDQG+AGDNIGALLRG KREDV+RGQVLAAP T+T H KF AE Y+L K+EGGRHTPF TNYR
Sbjct:  190 EVEIVGIKATVKTTCTGVEMFRKLLDQGEAGDNIGALLRGTKREDVERGQVLAAPGTITPHTKFEAEAYILTKEEGGRHTPFFTNYR 276
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig80834.16095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFF2_9PHAE3.410e-4381.61Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
S7TQZ3_9DELT3.020e-4274.71Elongation factor Tu n=1 Tax=Desulfovibrio sp. X2 ... [more]
A0A6P1ZGA9_9DELT7.200e-4272.41Elongation factor Tu (Fragment) n=1 Tax=Oceanidesu... [more]
Q6N0C2_9PROT1.030e-4177.01Elongation factor Tu n=5 Tax=Rhodospirillaceae Tax... [more]
A0A846QMZ3_9DELT1.170e-4174.71Elongation factor Tu n=2 Tax=Desulfobaculum xiamen... [more]
A0A365VR13_9PSED1.830e-4174.71Elongation factor Tu (Fragment) n=3 Tax=Proteobact... [more]
UPI00048D16BC2.870e-4174.71EF-Tu/IF-2/RF-3 family GTPase n=1 Tax=Chitinibacte... [more]
X6IVG2_9HYPH3.620e-4177.01Elongation factor Tu n=3 Tax=unclassified Mesorhiz... [more]
A0A522WUV7_9PROT3.950e-4175.86Elongation factor Tu (Fragment) n=4 Tax=Rhodospiri... [more]
S9S683_MAGFU6.890e-4175.86Elongation factor Tu (Fragment) n=1 Tax=Magnetospi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig80834contigH-paniculata_contig80834:151..414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue2.4e-35
Seed eggNOG ortholog2880.D8LDT2
KEGG koko:K02358
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0050@1,KOG0460@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029,ko04147
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931010.1312182-CDS-H-paniculata_contig80834:150..4141622931010.1312182-CDS-H-paniculata_contig80834:150..414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig80834 151..414 -
1691481549.312961-CDS-H-paniculata_contig80834:150..4141691481549.312961-CDS-H-paniculata_contig80834:150..414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig80834 151..414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig80834.16095.1prot_H-paniculata_contig80834.16095.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig80834 151..414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig80834.16095.1

>prot_H-paniculata_contig80834.16095.1 ID=prot_H-paniculata_contig80834.16095.1|Name=mRNA_H-paniculata_contig80834.16095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
QLEITGIGEIIKTTCTGVEMFKKLLDQGQAGDNIGALLRGIKREDVQRGQ
VLAAPNTVTSHKKFTAEVYVLNKDEGGRHTPFMTNYR*
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mRNA from alignment at H-paniculata_contig80834:151..414-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig80834.16095.1 ID=mRNA_H-paniculata_contig80834.16095.1|Name=mRNA_H-paniculata_contig80834.16095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig80834:151..414- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTTGAGATCACCGGCATCGGAGAGATAATAAAAACGACCTGCACAGG
GGTGGAAATGTTCAAGAAGCTGCTTGACCAAGGGCAGGCCGGGGATAACA
TTGGAGCCCTGCTACGAGGGATCAAGCGAGAGGACGTGCAGCGCGGGCAG
GTGTTAGCAGCGCCCAACACGGTCACTTCCCACAAGAAATTCACCGCTGA
GGTGTACGTGTTGAACAAGGACGAGGGGGGACGACACACGCCATTCATGA
CGAACTACAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig80834:151..414-

>mRNA_H-paniculata_contig80834.16095.1 ID=mRNA_H-paniculata_contig80834.16095.1|Name=mRNA_H-paniculata_contig80834.16095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig80834:151..414- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTTGAGATCACCGGCATCGGAGAGATAATAAAAACGACCTGCACAGG
GGTGGAAATGTTCAAGAAGCTGCTTGACCAAGGGCAGGCCGGGGATAACA
TTGGAGCCCTGCTACGAGGGATCAAGCGAGAGGACGTGCAGCGCGGGCAG
GTGTTAGCAGCGCCCAACACGGTCACTTCCCACAAGAAATTCACCGCTGA
GGTGTACGTGTTGAACAAGGACGAGGGGGGACGACACACGCCATTCATGA
CGAACTACAGGTGACAGCTTGAGATCACCGGCATCGGAGAGATAATAAAA
ACGACCTGCACAGGGGTGGAAATGTTCAAGAAGCTGCTTGACCAAGGGCA
GGCCGGGGATAACATTGGAGCCCTGCTACGAGGGATCAAGCGAGAGGACG
TGCAGCGCGGGCAGGTGTTAGCAGCGCCCAACACGGTCACTTCCCACAAG
AAATTCACCGCTGAGGTGTACGTGTTGAACAAGGACGAGGGGGGACGACA
CACGCCATTCATGACGAACTACAGGTGA
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