mRNA_H-paniculata_contig808.16089.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig808.16089.1 vs. uniprot
Match: A0A6H5JFG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG5_9PHAE) HSP 1 Score: 335 bits (860), Expect = 4.080e-101 Identity = 263/709 (37.09%), Postives = 346/709 (48.80%), Query Frame = 1
Query: 172 VPAVDLYILSDSLTFEAINKRGNAEALPVGRVAVEKLLGVGGKGGSD---VPWVKLHEQRWDDMADDSALLLFPDEDINKASSRVLSFFDNMGTADGRITLEEMIAGFRKIKREWANLKVEEAGRATLQKLVRSMKRAGMSLDTWFRFMDSSQEGRGDDKLSGSELREGFARLSVQIARNECRCYMHRCNRVSYYGSPPRAEE------DTF--TNPTADN--------------IERIEQQ-------------------------------PTEEKGFKSTNSAVITV--PTSDKI------------------------QQWEANSISVPTTKAADE----------------------YGTSTNV-----------------GGGDFF---------------------NKRETRG------ESD-----TKEQRAIHDKQSDGA-EQCREVLGSRVSGMP-RVRRTAGGADTAVKLLACSEHALNGMVYLGPRGRLAASEDTTFSARDINDLMRFIDTDANFNLDMNEIRLAISRLNVESPSASSPAREAGSLLRLLERYMHTTGLRFTDLFYSIDR--NKNGFIEVEELRSIFAKISREPARLRERARVKAEQXXXXXXXXXXXXFQGQQAFERMEMCKKAGVYAILKKIEGWQTRCGRRLSDAFNGGGGERKGRNYGLDADELATVLSNLDLNFTLIEAMTV 1827
+P VD YI +S+T+ AI KRG ++ALP+ +VA LG+G GG V +V + D SALL F DEDI+K +L FFDN G D ++TLEEMI+GFRKI+R+WA +K E AGR L K+VR M+RAGMSL+ WF+FMD SQ G GD KL+ ELR GF RL+ IAR EC C +CNR+ YG PP D F N T+ N +ER +Q PT+ S + T+ TS I QQ E+ + AA YG S +V GGG E G ESD KE + +Q GA Q + + G+ R R ++ A + +AC EHAL+GMVYLG R E+ TF+++D++DLMRFIDTD +F+LD+ E+RLAISRL+ + + EAG+LL++LE YMH TG RFTD+F+ +DR N++G+IE ELR +F +SREPAR + RAR KAE + A ER+E KKAGVY++LK+IE WQTR G+RLS++F G G+ G N+GLD DELA + NLD + EAM V
Sbjct: 1 MPTVDQYIFEESITYGAIRKRGQSKALPL-KVASRGALGIGQPGGDSSKGVAFVGAGGNYTESYVDPSALL-FADEDIDK----LLKFFDNAGRGDDKVTLEEMISGFRKIRRKWATVKAERAGRVVLAKVVRLMRRAGMSLEEWFKFMDISQNGHGDGKLTALELRVGFERLATHIARRECCCRAFKCNRIPNYGLPPLTGPQIDPAGDGFETANGTSINCRSSSSGVAKDLSIVERTGKQENSSSHAQDHGHQAPSDRGKHHHHEGFEETDPTQHNHSSSHHQGCTTINRDTSSSITPDGIPDPTEEPEPKRAGGEGERGQQEESKPLGGSAQGAASGGSLGSAFPMGHHRSQGARGASLYGDSGSVDARRLSQGMNVLPGNRCGGGVXXXXXXXXXXXXXXXXXXXTIARRSEEEPGHEIDHCESDLVPMGAKEGPSAGQEQWCGAGNQAGPIENYKEEGVKSRTRTSSIDMLNAGRAVACREHALDGMVYLGQRAYFLGLENETFTSKDVSDLMRFIDTDVDFSLDIREMRLAISRLHADEDEDDARTSEAGNLLQVLESYMHRTGARFTDVFFCLDRRVNRSGYIEKHELRMLFEALSREPARRKARARAKAELAEERARQQELRTAEAHDALERLEKYKKAGVYSVLKRIEVWQTRTGKRLSESFRGSTGDGAG-NHGLDVDELAAFMRNLDFELSPAEAMLV 702
BLAST of mRNA_H-paniculata_contig808.16089.1 vs. uniprot
Match: D8LCN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN4_ECTSI) HSP 1 Score: 290 bits (742), Expect = 9.830e-86 Identity = 213/593 (35.92%), Postives = 288/593 (48.57%), Query Frame = 1
Query: 172 VPAVDLYILSDSLTFEAINKRGNAEALPVGRVAVEKLLGVGGKGGSDVPWVKLHEQRWDDMAD--DSALLLFPDEDINKASSRVLSFFDNMGTADGRITLEEMIAGFRKIKREWANLKVEEAGRATLQKLVRSMKRAGMSLDTWFRFMDSSQEG-------------RGDDKLSGSELREGFARLSVQIARNECRCYMHRCNRVSYYGSPPRAEEDTFT--------NPTADNIE------------------RIEQQPTEEKGFKSTNSAVITVPTSDKIQQWEANSISVPTTKAADEYGTSTNVGGGDFFNKRETRGESDTKEQRAIHDKQSDGAEQCREVLGSRVSGMPRVRRTAGGADTAVKLLACSEHALNGMVYLGPRGRLAASEDTTFSARDINDLMRFIDTDANFNLDMNEIRLAISRLNVESPSASSPAREAGSLLRLLERYMHTTGLRFTDLFYSIDRNKNGFIEVEELRSIFAKISREPARLRERARVKAEQXXXXXXXXXXXXFQGQQAFERMEMCKKAGVYAILKKIEGWQTRCGRRLSDAFNGGGGERKGRNYGLDADELATVLSNLDLNFTLIEAMTV 1827
+P VD YI D +T+ AI KRG+++ALP+ +A LG+G GG + DD D + LLF DEDI+K +L FFD G D ++TLEEMI+GFRKI+R+WA +K E AGR L K+VR M+RAGMSL+ WF+FMD+SQE +G+ K G + + S+ A + S YG + + +P I+ I + EE G++ VPT K + A E T+ G N +E ES R R ++ A + +AC EHAL+GMVYLG R E TF+++D++DLMRFIDTD +F+LD+ E+RLAISRL+ + + EAG+LL++LE YMH TG RFTD+F+ +DR EPAR + RAR KAE + A ER+EM KKAGVYA+LK+IE WQTR G+ LS++F G G+ G N+GLD DELA + NLD + EAM V
Sbjct: 1 MPTVDQYIFEDGITYGAITKRGHSKALPL-NIASGGALGIGQPGGDSSKGIAFVGAGGDDTESYVDPSALLFADEDIDK----LLKFFDKAGRGDDKVTLEEMISGFRKIRRKWATVKAERAGRVVLAKVVRLMRRAGMSLEEWFKFMDTSQEPDPRHAGGGGERGQQGESKPLGGSAQGDVSGGSLGSAVPMGHHQPEGTHGASLYGDNGSVDARRLSRVMNVLSGSPCGGGIDGXXXXXXXXXXXXXXXSNTIVTRSDEEPGYEIDRCESDLVPTGAKERP-----------SAGQEQWCGTDNQAGHIENNKEEGAES-------------------------------RTRASSIDVLNAGRAIACREHALDGMVYLGQRAYFLGLESETFTSKDVSDLMRFIDTDVDFSLDIREMRLAISRLHADEDEDDARTSEAGNLLQVLESYMHRTGARFTDVFFFLDR--------------------EPARRKARARAKAELAEERIRQKELRTAEAHDASERLEMYKKAGVYAVLKRIEVWQTRTGKHLSESFRGSTGDGTG-NHGLDVDELAAFMRNLDFELSPAEAMLV 525 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig808.16089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig808.16089.1 >prot_H-paniculata_contig808.16089.1 ID=prot_H-paniculata_contig808.16089.1|Name=mRNA_H-paniculata_contig808.16089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=609bp GNPHDLSVWSDSYPSCSIPTLSGKSCPAIAPLSSANNLEPSPQQFSSTGLback to top mRNA from alignment at H-paniculata_contig808:24826..31327+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig808.16089.1 ID=mRNA_H-paniculata_contig808.16089.1|Name=mRNA_H-paniculata_contig808.16089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6502bp|location=Sequence derived from alignment at H-paniculata_contig808:24826..31327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig808:24826..31327+ >mRNA_H-paniculata_contig808.16089.1 ID=mRNA_H-paniculata_contig808.16089.1|Name=mRNA_H-paniculata_contig808.16089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3654bp|location=Sequence derived from alignment at H-paniculata_contig808:24826..31327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |