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Homology
BLAST of mRNA_H-paniculata_contig808.16086.1 vs. uniprot
Match: D8LCN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN5_ECTSI) HSP 1 Score: 105 bits (262), Expect = 4.220e-23 Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 3
Query: 12 GNVLQVQCLAMLQAHGLSPEAWCEELLSKNRKGGRLTTFDMGMSIRAYNKTKPAWVPSHKHWLHNLMISEKDVQ 233
G ++CLAML+AHGL+PE W +ELLS+ RK RLTTF+MG SIR YN+ KPAWV SHKHWL MISEKD++
Sbjct: 594 GKAAFIKCLAMLKAHGLAPEDWLQELLSE-RKQDRLTTFEMGESIRGYNRAKPAWVRSHKHWLREFMISEKDLR 666
BLAST of mRNA_H-paniculata_contig808.16086.1 vs. uniprot
Match: A0A6H5JDR9_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR9_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 3.640e-22 Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 3
Query: 42 MLQAHGLSPEAWCEELLSKNRKGGRLTTFDMGMSIRAYNKTKPAWVPSHKHWLHNLMISEKDVQ 233
ML+AHGLSP+ W +ELLS+ RK RLTTF+MG SIR YN+ KPAWV SHKHWL MISEKD++
Sbjct: 1 MLKAHGLSPDDWLQELLSR-RKQDRLTTFEMGESIRGYNRAKPAWVRSHKHWLREFMISEKDLR 63
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 534 |
| Cds size | 309 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig808.16086.1 >prot_H-paniculata_contig808.16086.1 ID=prot_H-paniculata_contig808.16086.1|Name=mRNA_H-paniculata_contig808.16086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MSKVDKDKGGTIDEAELRQFLKLGQRKETSGAVNIKWARQQRAELAQRER
MKERNEYRRKAIQAKDRLAQSRITGAYDVLKSLKHFTKTTGLRVSDLIQV
EL* back to topmRNA from alignment at H-paniculata_contig808:11733..15513- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig808.16086.1 ID=mRNA_H-paniculata_contig808.16086.1|Name=mRNA_H-paniculata_contig808.16086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3781bp|location=Sequence derived from alignment at H-paniculata_contig808:11733..15513- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCTCCTCTTGGAAACGTCCTTCAAGTACAGTGCCTCGCAATGCTCCAA
GCGCATGGTCTATCCCCCGAGGCCTGGTGTGAAGAATTGCTCTCCAAGAA
CAGGTGAGTAGAACCTCCTAGTTACTGTACACTACTTAGCTGGTTTGACT
CCCCTATACTTCGAGTGCGTTGTCCTGAACAAATCATTTTTACCCTTGGA
ACTAGGCCCCATCATCTATGTGCAAATCAGTAGTAGTACGTAGTGTGTTA
TATCTCGATTTGTGTGTACAGGCTCTCTGCGTGAAACGTTGGGTTTTTAA
CAAGAAGAGATTTCATTTTATGCAGGTCTTCTTCCACACCCTATTTCGGA
AGATCTGTCCGCTTGCTTTGTCGTTTTGTGCTCACAGTGATCTACTATCT
CCTCGAGATATCTGAGACTCCGACTTGTTCTCTAAGAATATGGTAGCATT
TCAACCCAGACCTGACAAATATTTGTGCTGTACAAATGAAAACATTCTCC
GTGTACGTAGTGCATGTAATTACAACAATGCTCTACCTGTTCACAGTTTT
CTGATATGCCTGGAGAAGCACAGTGAAAACGAATTTGCTATTGGTATGTA
CGGAGAAGATGGAAGTTTCTACACACGAGTACGACCACGTACGAACGTGG
CGACAGGGGCCGCAGCAGCGAATGATACAGAGGAAAAACTAACTATACAG
ACAGCCGGCCCCTTGTAAGAGCAGCCGCCCCCCGGAAACGATGAAAAAGC
AAAAAGAAAACATACTTTCCATCACGACGAGAACGGGAAAAAAATGTTCT
GCTCCCACACGTTTATGTATATTCGTTTGTTTGTTTTTAAGAGGAAAGAA
GGTAGATTAACAATTCGATAAAGATGCTTCCATCACTACGAGAACCGAAA
AACCTACTGCTACCACATGTTTCGTTTGTTCGTTTGTTTGCCATTAACAG
GAAAGGAGGGAGATTAACAACCTTCGACATGGGCATGAGCATCCGTGCGT
ACAACAAGACGAAACCGGCATGGGTGCCGTCTCACAAACACTGGCTTCAC
AACCTCATGATCTCGGAAAAGGATGTCCGCTGGTGCCTACGATTCGTGGA
TCCAGACGGGTAAGGAGGACGTGAGGACACACTCACTACGGTAGAGGTAT
GATAATACCGGTTCCCGGAATACATACTGAACCACATCTATAGCGAGGAT
ACCGCCGATCATATCCAATCTATCGAAAGACATTGTTGATGCAGTTAGAT
ATGTGCCTACCGTACACGTCGGAAGCATACATAGCGGAACCCATGCCATG
GCATATCTGACGATACACGCCACCACCGTTTGTGGGACCGTTTTGGTAGG
AGGCTCGAAAACATTTCCCCCAATGGAGGTTTTCAGATTTCGAAATACAT
GCTGTTTATTTCTTCTCATGTTTTCCTCCAAGCAACACCGATGTGGATGC
TGAAGAGCTGTCCAACGCAGTGCGAAGTACCCTCGATGGAAAGCCTAGAA
TTTCTGAGGAGGAGGGCAGGTACGGCACTAGTTTGTGGCGTGGAAAAAAG
CACCGTGTGTACGCATGCACATATATTCTCGAAAAGCGAGCAGAACGCCA
TTTGTGCATGTATAAGGTGATGGATTGAATGCAAACCTCCTGATGACATA
CAAAACGTGTACAATAGCGTTACTGTATTCATTTGTTATCTTCTTTTTTA
AGTTGTTCAGGTATTTAACAAAATTACTAGTCTCCTTTGTCGAAACCAAA
AGTGTTTTTCCGAATCTCTCAATTATTAATGCTCTGTCGGGTCATGGTGG
GTCATAACTCGCTCTAACTGTGGGATGACGTCAACGCAAATCGACGATTG
ATACTGTAGATGAAACGCAATGGGGCAAGGACAAATACAAGGGGGGCGGG
CGGGGGACCACCCATGTATGGGCTTCTCCTCCCCCTTTTTACCTTGTTGT
TCTGCCCCCTCCCCCCCATCCTCCCGACTCGCACTGATCACGCCATTATC
CTTGCGCTTGGCCCTGACCCCTAGGGTGGTGACTCTGATCCTGGAGTTCG
AACGATTCATGTCTGTGAATCGCATTCGACTGGTTGATTTGTTCGAGAAA
GTGGACAAGGACAAAGGGGGCACGATTGACGAAGCGGAGTTGCGCCAATT
TCTCAAGCTCGGGCAGCGAAAAGAGTAAGTGCGTTGTGCGGGCGGCTGTG
GGGACAGATTTTGTGGCCGTTCCCATCCATCCGTGTCTGCTTTTGTGAAA
GCAGACGCCGAAATCATTACAACATTACAACCACGTAGACACACATCGCG
GTTTTGGCCAAGTAAACGATTCCGCGTCCCACCGGCCGAGCGGAAGAAAT
ACTTCGTGTAGCTGTGTCTGCCACTTGCCTGCCTGATATTCACGGTGTCC
ACCACCATCACAGCCTTTTTTTTCTGTTGAGCTACTATCAACGCGGGAAT
CGTTCCGTCAATCACTCGACGACGGCGAGCGCGGTTTTTTGTACAAGGAA
CCAACTAAGGCAAGGAAAATCCTCACTCCGTCGAGACCTTACGATGACAA
GCTGTGCCCCCATTGGTTTTACGGCATGCAGGACAAGTGGTGCCGTGAAT
ATCAAGTGGGCAAGGCAGCAGAGGGCAGAGTTGGCCCAACGAGAGCGAAT
GAAGGAACGAAACGAATACCGAAGAAAGGCAATCCAGGCGAAGGATCGGC
TTGCACAGTCGAGGTAAGGGTCTAGCCAGCGCCCACCTTATTTTTCGCGT
GCTGCTGTTGTTGTACATGATTTGGATTTCGGTTGGTGCTTGTTGTTCGT
AACAGGGACGCTTAGTGGTTGCATATTCCGGGGTGGAAAGGAAAAAGGGA
CGCTTAACTCAGCTCGTTTTTCTTCAAGCACAAGAGCAATATATTGGCGG
CAACCTGGTGTAGACAAAAACGCTCGCAATGGGTGCTGTAGTTGCACGTT
GCTTGTGCTGTGGTTGGCTTTGCACTAGGACAGGGAGCGATTAGTGCACC
TATTCTTCTTCTCACCATGCTAACATTTTAACATTTTTTTACAAGGTTAA
GCGATTATCGGTGTGTGTGTGTGTGTTTGTGTGTGTGCGCGCGCGCACTG
TTCACTCGAGAGAGGGCAGTTTATAGTATTTCTGAGTACCCTGCCTCTGA
CGCAATCCTAGCAGTGTTTCGCTCCGTGTTTGGGAATAAACTATCTGGCG
CTTAGTCCTAATAAGAGAGGTCATCCTAGCCTCGGGTTACCACGCGGTGG
CGCCATAGGTGTACACACGTGGCCAGAGGGATACCTTGTTGCGGATATTG
CAACGTCCACGCTTTGGTGAAGTTGGCAGTGTTTACACAACGTATTAGGA
CGTTGCGGTGAGGTTTACAATGTAGATACAATGTGCTAATACGTTGTATG
CACATCGTAAACCTCACCGCAACATGAGACGTTGTAATATCCGCAACAAG
ATATGCACAACGCACCCTCTGGCGACGTGTATATATCGGTCGTTTGAAAG
CGTAGATGGCAATTAGATAGCGATACTCAGGCGATCGGTCTCGAGCCGAG
GAAGTTCCCCGTTTAGTAGAAGTTACCGTGTGAGCGTAAATTATACTACG
AAGCCACGATACATATATATATATATATATATATATTTATACATACATAC
ACTGACGTGTAAGCTTAATTTTCCGTTTACGAAACAGAATCACGGGTGCG
TATGATGTACTCAAGAGCTTGAAGCACTTCACCAAGACTACCGGACTTCG
AGTCTCAGATTTAATTCAGGTGGAGTTATAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig808:11733..15513- >mRNA_H-paniculata_contig808.16086.1 ID=mRNA_H-paniculata_contig808.16086.1|Name=mRNA_H-paniculata_contig808.16086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig808:11733..15513- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCATGTCCAAAGTGGACAAGGACAAAGGGGGCACGATTGACGAAGC
GGAGTTGCGCCAATTTCTCAAGCTCGGGCAGCGAAAAGAAAAGTGGACAA
GGACAAAGGGGGCACGATTGACGAAGCGGAGTTGCGCCAATTTCTCAAGC
TCGGGCAGCGAAAAGAGACAAGTGGTGCCGTGAATATCAAGTGGGCAAGG
CAGCAGAGGGCAGAGTTGGCCCAACGAGAGCGAATGAAGGAACGAAACGA
ATACCGAAGAAAGGCAATCCAGGCGAAGGATCGGCTTGCACAGTCGAGGA
CAAGTGGTGCCGTGAATATCAAGTGGGCAAGGCAGCAGAGGGCAGAGTTG
GCCCAACGAGAGCGAATGAAGGAACGAAACGAATACCGAAGAAAGGCAAT
CCAGGCGAAGGATCGGCTTGCACAGTCGAGAATCACGGGTGCGTATGATG
TACTCAAGAGCTTGAAGCACTTCACCAAGACTACCGGACTTCGAGTCTCA
GATTTAATTCAGGTGGAGTTATAGAATCACGGGTGCGTATGATGTACTCA
AGAGCTTGAAGCACTTCACCAAGACTACCGGACTTCGAGTCTCAGATTTA
ATTCAGGTGGAGTTATAG back to top
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