mRNA_H-paniculata_contig8077.16082.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8077.16082.1
Unique NamemRNA_H-paniculata_contig8077.16082.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8077.16082.1 vs. uniprot
Match: A0A6H5L902_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L902_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 7.200e-24
Identity = 63/149 (42.28%), Postives = 91/149 (61.07%), Query Frame = 1 
Query:  862 VVSRLEAEIAEYDKAPAIVSHQS-DLLQYWSDAAKPRLDSGRNMLEKPRFPLLSMLARVFHSVDSTSCESERDFS*LAMIISKLRRSMMPECIDKMMFLKPNFERIPEVRAVLQMLDGMKAVQQGGRMLVAKAQAERAEEVVVGDKTRE 1305
            V  R++ E+ EY K PA V  +  D+L +W DA  PRLD   N++   +FP+LSMLARV+  +DSTSC+SER+FS L  + + LR++M+P+ ++ +MFL+ N   IPE+  +   L  + A Q  G+   A  QA  A E VV D   E
Sbjct:  154 VTDRVQKEVDEYTKLPAAVPAKDYDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSNPHLIPEINKLDNGLGKLLAAQAVGKAKAASVQAANAGEQVVVDVDSE 302
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BLAST of mRNA_H-paniculata_contig8077.16082.1 vs. uniprot
Match: A0A6H5L256_9PHAE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L256_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.760e-21
Identity = 50/109 (45.87%), Postives = 75/109 (68.81%), Query Frame = 1 
Query:  862 VVSRLEAEIAEYDKAPAIVSHQS-DLLQYWSDAAKPRLDSGRNMLEKPRFPLLSMLARVFHSVDSTSCESERDFS*LAMIISKLRRSMMPECIDKMMFLKPNFERIPEV 1185
            V  R++ E+ EY K PA V  +  D+L +W DA  PRLD   N++   +FP+LSMLARV+  +DSTSC+SER+FS L  + + LR++M+P+ ++ +MFL+ N   IPE+
Sbjct:  152 VTDRVQKEVDEYTKLPAAVPAKDYDVLGFWRDAGSPRLDPHGNVVSAAQFPILSMLARVYLCIDSTSCQSEREFSGLGFVYNNLRQAMVPDRVEMVMFLRSNPHLIPEI 260
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BLAST of mRNA_H-paniculata_contig8077.16082.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.360e-15
Identity = 57/147 (38.78%), Postives = 89/147 (60.54%), Query Frame = 1 
Query:  850 RRSGVVSR-LEAEIAEYDKAPAIVSHQSDLLQYWSDAAKPRLDSGRNMLEKPRFPLLSMLARVFHSVDSTSCESERDFS*LAMIISKLRRSMMPECIDKMMFLKPNFERIPEVRAVLQMLDGMKAVQQGGRMLVAKAQAERAEEVVV 1287
            RR  +V R L   +AE    PA   +   LL++W   +KPR  +    +E P  P L+++AR+FH ++STSC++ER+FS LA +I  LR SM+P  ++++MFL+ N   IPEV+A+   ++  KA     +  VA+ +AE A + VV
Sbjct:  362 RRGAIVERELRMYLAE---DPAEEEYDFSLLEFWQRRSKPRTCAETGEVE-PGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGDAVV 504
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BLAST of mRNA_H-paniculata_contig8077.16082.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.320e-15
Identity = 57/147 (38.78%), Postives = 89/147 (60.54%), Query Frame = 1 
Query:  850 RRSGVVSR-LEAEIAEYDKAPAIVSHQSDLLQYWSDAAKPRLDSGRNMLEKPRFPLLSMLARVFHSVDSTSCESERDFS*LAMIISKLRRSMMPECIDKMMFLKPNFERIPEVRAVLQMLDGMKAVQQGGRMLVAKAQAERAEEVVV 1287
            RR  +V R L   +AE    PA   +   LL++W   +KPR  +    +E P  P L+++AR+FH ++STSC++ER+FS LA +I  LR SM+P  ++++MFL+ N   IPEV+A+   ++  KA     +  VA+ +AE A + VV
Sbjct:  690 RRGAIVERELRMYLAE---DPAEEEYDFSLLEFWQRRSKPRTCAETGEVE-PGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGDAVV 832
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BLAST of mRNA_H-paniculata_contig8077.16082.1 vs. uniprot
Match: A0A6V7UR76_9BILA (Hypothetical protein n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7UR76_9BILA)

HSP 1 Score: 55.8 bits (133), Expect = 1.080e-5
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:  871 RLEAEIAEYDKAPAIVSHQSDLLQYWSDAAKPRLDSGRNMLEKPRFPLLSMLARVFHSVDSTSCESERDFS*LAMIISKLRRSMMPECIDKMMFLKPNFE 1170
            + E E+ EY  A  + S  SD   YW+         G N +   ++PLL+ LA  + S  +TS ESER FS    I+S LR+ ++PE I+K++FL  N +
Sbjct:   61 KAEVEVVEYLHATKL-SVGSDPFIYWT---------GENAI---KWPLLATLANKYFSAPATSSESERLFSTAGQIVSNLRKRLLPENIEKLLFLHHNLK 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8077.16082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L902_9PHAE7.200e-2442.28Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5L256_9PHAE4.760e-2145.87Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A6H5KAN7_9PHAE1.360e-1538.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE2.320e-1538.78Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6V7UR76_9BILA1.080e-537.00Hypothetical protein n=1 Tax=Meloidogyne enterolob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8077contigH-paniculata_contig8077:1394..3344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1460
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8077.16082.1prot_H-paniculata_contig8077.16082.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8077 2569..2970 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.814444-UTR-H-paniculata_contig8077:1393..16561622931008.814444-UTR-H-paniculata_contig8077:1393..1656Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8077 1394..1656 +
1691481548.8887181-UTR-H-paniculata_contig8077:1393..16561691481548.8887181-UTR-H-paniculata_contig8077:1393..1656Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8077 1394..1656 +
1622931008.8326437-UTR-H-paniculata_contig8077:2147..25681622931008.8326437-UTR-H-paniculata_contig8077:2147..2568Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8077 2148..2568 +
1691481548.8981025-UTR-H-paniculata_contig8077:2147..25681691481548.8981025-UTR-H-paniculata_contig8077:2147..2568Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8077 2148..2568 +
1622931008.8628638-UTR-H-paniculata_contig8077:2970..33441622931008.8628638-UTR-H-paniculata_contig8077:2970..3344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8077 2971..3344 +
1691481548.9147604-UTR-H-paniculata_contig8077:2970..33441691481548.9147604-UTR-H-paniculata_contig8077:2970..3344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8077 2971..3344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.8498755-CDS-H-paniculata_contig8077:2568..29701622931008.8498755-CDS-H-paniculata_contig8077:2568..2970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8077 2569..2970 +
1691481548.9066722-CDS-H-paniculata_contig8077:2568..29701691481548.9066722-CDS-H-paniculata_contig8077:2568..2970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8077 2569..2970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8077.16082.1

>prot_H-paniculata_contig8077.16082.1 ID=prot_H-paniculata_contig8077.16082.1|Name=mRNA_H-paniculata_contig8077.16082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MKPGDPPARQLPPLLQPAKMAGKLPANLPRQSVRRVYSRGTRVHESRKQQ
RRLPRRRSGVVSRLEAEIAEYDKAPAIVSHQSDLLQYWSDAAKPRLDSGR
NMLEKPRFPLLSMLARVFHSVDSTSCESERDFS*
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mRNA from alignment at H-paniculata_contig8077:1394..3344+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8077.16082.1 ID=mRNA_H-paniculata_contig8077.16082.1|Name=mRNA_H-paniculata_contig8077.16082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1951bp|location=Sequence derived from alignment at H-paniculata_contig8077:1394..3344+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGACGTCACCTGCATGGCGCCACTTCAGCAAGTACAACATCCCGAATA
GCAACGGCAACAACGTCTGCTACAATGTGCGTGGCGATGACGGGAATCAA
TGCAATCAGGAGATTAAGCACACTTTGGAACATGACAGGTCCATCGTGAT
CAAGTATTTAAACAGTTCCCACATGGAGATAGCGAGGGAGGTCCTAGCGG
CGGGCAGACACTCCAGGGAGACCAAAGAGAAGAAGGGGGCTACACTTGGT
GGACACGACGCAAGTGAGTTATTCTTATAAGTTTTATTGGTTTCGACTTG
GCGCCTCTCTTGTCAGCATGCAGTACCGTAGTGGCTGTAAGGTGTGGTCG
TGATCGTTTTTTGTGTTTTGTACTTAAGTTGGCAGCGACTACAGCTACAG
TAGGTGTACAAAACAGTCAGTAGAAGATAAAAAAAAATAGTGTGTCACTG
TCTGTGTTACAAATGTTGTTAGTTCGTTATATGTTCGTGTTTTATGTTTT
AGTCGCTTCATGTTTTAATTTCTACTTGAAGTATGTGACAGTTGATAGCC
AGTACAGTCAGTAGCTTTTTATTGTTTGTTACCATTTTGTTTTTGTATGT
TGTACTGAATTGTGTGCCTTACTAGACGCAAGACCAGTAATAAACAACCA
TACCCAACATGTAACATCTTTATGATGTTGCTCCGTGTTGTCCTCCCTTT
CGCGATACGTGGGGTTCATGATTCACCTCTTTGTCACATACGCTGGTGCT
GGAGGAGCCCATCTGCGAGTATCTGCCCATGAATCCTCCTCACGTGGCCC
GGCATGACCCCTCGCCAATGAACTGGCTTTTGAAGGAGGTTTGCAGCACT
CTGGAGACCTTGAAGCACGTCAACGTTGCCATCCGAGGAAGAAAAGACGG
CCAGCTGAGTCGCGCGATTTTACTCTGTCACGAGCTATGCTCTATCCTGA
GTGTCGATGACGTGGAGATAATCGACTGGAGGAGCCGTCGCGATGCCACT
GTCGACATCGTGGGCGACAGCTAGGACAGCGCCATGGATGACGCGGAGTT
GATCGCCCTCTACCTGGACCCACGCTACAAGTCGCTGTCTCCTGACGTCT
GTGGAAATGGTGACGATGAGGGCCGCTTGAGAACGGAGGCTCGCGAAGCT
TTGTCAAAGATCGGTTCCACCATGAATGAAGCCGGGCGACCCACCCGCCC
GGCAGCTGCCCCCACTGCTCCAGCCCGCGAAAATGGCAGGCAAGCTTCCC
GCAAACCTCCCCCGGCAAAGCGTGCGAAGAGTGTATTCGAGAGGCACCAG
GGTGCACGAGAGCAGGAAGCAGCAAAGAAGGCTGCCAAGGCGCAGAAGCG
GCGTGGTATCGCGTCTGGAGGCGGAAATCGCTGAGTATGACAAGGCGCCT
GCCATCGTGAGCCATCAATCTGACTTGCTGCAGTACTGGAGTGATGCAGC
AAAGCCGAGGCTTGATAGTGGCCGCAATATGCTGGAAAAGCCGAGATTCC
CTCTCCTGTCCATGTTAGCAAGGGTCTTCCATAGCGTCGACAGTACAAGC
TGCGAATCGGAGCGCGACTTTTCATAGTTGGCCATGATCATAAGCAAACT
CAGGCGGAGCATGATGCCAGAGTGTATTGACAAAATGATGTTTTTGAAGC
CGAACTTTGAGCGCATCCCTGAAGTGCGGGCTGTTTTGCAAATGTTGGAC
GGAATGAAGGCTGTGCAGCAAGGGGGGCGGATGCTGGTTGCCAAAGCCCA
GGCAGAGAGGGCGGAAGAAGTGGTTGTAGGTGATAAGACTAGGGAGCCCG
TGAAAACGACATTACGAGGGACAAGCCAGCGTTGATGACTAGGGAGGGGG
TTGCGTCGGGTGCGGCGTAGTAGGGGACCGCCAGTGATCGTACAGCTTGA
TTCAGATGTCTCATTGTTCGTGCTGTTCGTTGTTGTTCTTGTGACTGTAT
A
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Coding sequence (CDS) from alignment at H-paniculata_contig8077:1394..3344+

>mRNA_H-paniculata_contig8077.16082.1 ID=mRNA_H-paniculata_contig8077.16082.1|Name=mRNA_H-paniculata_contig8077.16082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig8077:1394..3344+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCCGGGCGACCCACCCGCCCGGCAGCTGCCCCCACTGCTCCAGCC
CGCGAAAATGGCAGGCAAGCTTCCCGCAAACCTCCCCCGGCAAAGCGTGC
GAAGAGTGTATTCGAGAGGCACCAGGGTGCACGAGAGCAGGAAGCAGCAA
AGAAGGCTGCCAAGGCGCAGAAGCGGCGTGGTATCGCGTCTGGAGGCGGA
AATCGCTGAGTATGACAAGGCGCCTGCCATCGTGAGCCATCAATCTGACT
TGCTGCAGTACTGGAGTGATGCAGCAAAGCCGAGGCTTGATAGTGGCCGC
AATATGCTGGAAAAGCCGAGATTCCCTCTCCTGTCCATGTTAGCAAGGGT
CTTCCATAGCGTCGACAGTACAAGCTGCGAATCGGAGCGCGACTTTTCAT
AGATGAAGCCGGGCGACCCACCCGCCCGGCAGCTGCCCCCACTGCTCCAG
CCCGCGAAAATGGCAGGCAAGCTTCCCGCAAACCTCCCCCGGCAAAGCGT
GCGAAGAGTGTATTCGAGAGGCACCAGGGTGCACGAGAGCAGGAAGCAGC
AAAGAAGGCTGCCAAGGCGCAGAAGCGGCGTGGTATCGCGTCTGGAGGCG
GAAATCGCTGAGTATGACAAGGCGCCTGCCATCGTGAGCCATCAATCTGA
CTTGCTGCAGTACTGGAGTGATGCAGCAAAGCCGAGGCTTGATAGTGGCC
GCAATATGCTGGAAAAGCCGAGATTCCCTCTCCTGTCCATGTTAGCAAGG
GTCTTCCATAGCGTCGACAGTACAAGCTGCGAATCGGAGCGCGACTTTTC
ATAG
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