mRNA_H-paniculata_contig80723.16081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE) HSP 1 Score: 134 bits (336), Expect = 1.750e-33 Identity = 75/153 (49.02%), Postives = 98/153 (64.05%), Query Frame = 1
Query: 1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
K DE G + K KA LV +GF Q+H VD+LE F PT A+S++ V A+A + N L LD++QAF+Q LD EVFMKLP GC SG+IVRLNK++YGLK+A R + YK S + R G +S DPCV R V II +VDD+++
Sbjct: 472 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF----YKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILY 620
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE) HSP 1 Score: 134 bits (336), Expect = 1.760e-33 Identity = 75/153 (49.02%), Postives = 98/153 (64.05%), Query Frame = 1
Query: 1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
K DE G + K KA LV +GF Q+H VD+LE F PT A+S++ V A+A + N L LD++QAF+Q LD EVFMKLP GC SG+IVRLNK++YGLK+A R + YK S + R G +S DPCV R V II +VDD+++
Sbjct: 536 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF----YKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILY 684
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE) HSP 1 Score: 134 bits (336), Expect = 1.760e-33 Identity = 75/153 (49.02%), Postives = 98/153 (64.05%), Query Frame = 1
Query: 1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
K DE G + K KA LV +GF Q+H VD+LE F PT A+S++ V A+A + N L LD++QAF+Q LD EVFMKLP GC SG+IVRLNK++YGLK+A R + YK S + R G +S DPCV R V II +VDD+++
Sbjct: 680 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF----YKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILY 828
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.470e-32 Identity = 74/153 (48.37%), Postives = 96/153 (62.75%), Query Frame = 1
Query: 1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
K DE G + K KA LV +GF Q+H VD+LE F PT A+S++ V A+A + N L LD++QAF Q LD EV MKLP GC SG+IVRLNK++YGLK+A R + YK S + R G +S DPCV R V II +VDD+++
Sbjct: 267 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF----YKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILY 415
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 128 bits (321), Expect = 1.840e-31 Identity = 70/153 (45.75%), Postives = 97/153 (63.40%), Query Frame = 1
Query: 1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
K DE G + K KA LV +GF Q++ VD+LE F PT A+S + V A+A + N L D++QAF+Q LD+EVFMKLP GC SG++VRLNK++YGLK+A R + YK S + R G +S DPCV R V ++ +VDD+++
Sbjct: 502 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTF----YKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILY 650
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 128 bits (321), Expect = 1.880e-31 Identity = 70/153 (45.75%), Postives = 97/153 (63.40%), Query Frame = 1
Query: 1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
K DE G + K KA LV +GF Q++ VD+LE F PT A+S + V A+A + N L D++QAF+Q LD+EVFMKLP GC SG++VRLNK++YGLK+A R + YK S + R G +S DPCV R V ++ +VDD+++
Sbjct: 769 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTF----YKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILY 917
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5JKF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF2_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.270e-31 Identity = 70/147 (47.62%), Postives = 95/147 (64.63%), Query Frame = 1
Query: 1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYKYSWINRYGAPKSDPCVFRLEKRGVVDMIICANVDDV 441
K DE G TK KA LV RG Q+ S+DF E+F PTV+ SSV+ + A+A E N L D++QAF+Q LD +VFM+LP+GC SG IV+L K++YGLK+A R W + + + + +D CVFRL + G V MII +VDD+
Sbjct: 405 KADEYGRPTKFKARLVARGDMQRASIDFGELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDI 551
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE) HSP 1 Score: 124 bits (310), Expect = 5.650e-31 Identity = 68/151 (45.03%), Postives = 95/151 (62.91%), Query Frame = 1
Query: 7 DEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
DE + K KA LV +GF Q++ VD+LE F PT A+S + V A+A + N L D++QAF+Q LD+EVFMKLP GC SG++VRLNK++YGLK+A R + YK S + R G +S DPCV R V ++ +VDD+++
Sbjct: 38 DETAKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTF----YKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILY 184
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 125 bits (313), Expect = 1.870e-30 Identity = 66/151 (43.71%), Postives = 94/151 (62.25%), Query Frame = 1
Query: 1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYKYSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
K DE G + K KA LV +GF Q+H +D+L F PT A+S++ + A+A + N L LD++QAF+Q LD VFMKLP GC SG++VRLNK++YGLK+A R + S + R G +S DPCV R V ++ +VDD+++
Sbjct: 221 KADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLV--SDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILY 369
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5KGB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB0_9PHAE) HSP 1 Score: 122 bits (307), Expect = 2.080e-30 Identity = 68/145 (46.90%), Postives = 93/145 (64.14%), Query Frame = 1
Query: 7 DEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYKYSWINRYGAPKSDPCVFRLEKRGVVDMIICANVDDV 441
DE G TK KA LV RG Q+ S+DF E+F PTV+ SSV+ + A+A E N L D++QAF+Q L+ +VFM+LP+GC SG IV+L K++YGLK+A R W + + + +D CVFRL + G V MII +VDD+
Sbjct: 69 DEYGWPTKFKARLVARGDMQRASIDFGELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELEEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRQWHAHLTRCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVDDI 213 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig80723.16081.1 >prot_H-paniculata_contig80723.16081.1 ID=prot_H-paniculata_contig80723.16081.1|Name=mRNA_H-paniculata_contig80723.16081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp MKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYKYSWINRYGAPKSDback to top mRNA from alignment at H-paniculata_contig80723:1..447+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig80723.16081.1 ID=mRNA_H-paniculata_contig80723.16081.1|Name=mRNA_H-paniculata_contig80723.16081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig80723:1..447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig80723:1..447+ >mRNA_H-paniculata_contig80723.16081.1 ID=mRNA_H-paniculata_contig80723.16081.1|Name=mRNA_H-paniculata_contig80723.16081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig80723:1..447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |