mRNA_H-paniculata_contig80723.16081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig80723.16081.1
Unique NamemRNA_H-paniculata_contig80723.16081.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.750e-33
Identity = 75/153 (49.02%), Postives = 98/153 (64.05%), Query Frame = 1
Query:    1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
            K DE G + K KA LV +GF Q+H VD+LE F PT  A+S++ V A+A + N  L  LD++QAF+Q  LD EVFMKLP GC   SG+IVRLNK++YGLK+A R +    YK   S + R G  +S  DPCV R      V  II  +VDD+++
Sbjct:  472 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF----YKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILY 620          
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.760e-33
Identity = 75/153 (49.02%), Postives = 98/153 (64.05%), Query Frame = 1
Query:    1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
            K DE G + K KA LV +GF Q+H VD+LE F PT  A+S++ V A+A + N  L  LD++QAF+Q  LD EVFMKLP GC   SG+IVRLNK++YGLK+A R +    YK   S + R G  +S  DPCV R      V  II  +VDD+++
Sbjct:  536 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF----YKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILY 684          
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.760e-33
Identity = 75/153 (49.02%), Postives = 98/153 (64.05%), Query Frame = 1
Query:    1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
            K DE G + K KA LV +GF Q+H VD+LE F PT  A+S++ V A+A + N  L  LD++QAF+Q  LD EVFMKLP GC   SG+IVRLNK++YGLK+A R +    YK   S + R G  +S  DPCV R      V  II  +VDD+++
Sbjct:  680 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF----YKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILY 828          
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.470e-32
Identity = 74/153 (48.37%), Postives = 96/153 (62.75%), Query Frame = 1
Query:    1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
            K DE G + K KA LV +GF Q+H VD+LE F PT  A+S++ V A+A + N  L  LD++QAF Q  LD EV MKLP GC   SG+IVRLNK++YGLK+A R +    YK   S + R G  +S  DPCV R      V  II  +VDD+++
Sbjct:  267 KADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTF----YKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILY 415          
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.840e-31
Identity = 70/153 (45.75%), Postives = 97/153 (63.40%), Query Frame = 1
Query:    1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
            K DE G + K KA LV +GF Q++ VD+LE F PT  A+S + V A+A + N  L   D++QAF+Q  LD+EVFMKLP GC   SG++VRLNK++YGLK+A R +    YK   S + R G  +S  DPCV R      V  ++  +VDD+++
Sbjct:  502 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTF----YKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILY 650          
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.880e-31
Identity = 70/153 (45.75%), Postives = 97/153 (63.40%), Query Frame = 1
Query:    1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
            K DE G + K KA LV +GF Q++ VD+LE F PT  A+S + V A+A + N  L   D++QAF+Q  LD+EVFMKLP GC   SG++VRLNK++YGLK+A R +    YK   S + R G  +S  DPCV R      V  ++  +VDD+++
Sbjct:  769 KADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTF----YKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILY 917          
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5JKF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF2_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.270e-31
Identity = 70/147 (47.62%), Postives = 95/147 (64.63%), Query Frame = 1
Query:    1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYKYSWINRYGAPKSDPCVFRLEKRGVVDMIICANVDDV 441
            K DE G  TK KA LV RG  Q+ S+DF E+F PTV+ SSV+ + A+A E N  L   D++QAF+Q  LD +VFM+LP+GC   SG IV+L K++YGLK+A R W +   +   +  +    +D CVFRL + G V MII  +VDD+
Sbjct:  405 KADEYGRPTKFKARLVARGDMQRASIDFGELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDI 551          
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 5.650e-31
Identity = 68/151 (45.03%), Postives = 95/151 (62.91%), Query Frame = 1
Query:    7 DEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYK--YSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
            DE   + K KA LV +GF Q++ VD+LE F PT  A+S + V A+A + N  L   D++QAF+Q  LD+EVFMKLP GC   SG++VRLNK++YGLK+A R +    YK   S + R G  +S  DPCV R      V  ++  +VDD+++
Sbjct:   38 DETAKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTF----YKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILY 184          
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.870e-30
Identity = 66/151 (43.71%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    1 KIDEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYKYSWINRYGAPKS--DPCVFRLEKRGVVDMIICANVDDVIF 447
            K DE G + K KA LV +GF Q+H +D+L  F PT  A+S++ + A+A + N  L  LD++QAF+Q  LD  VFMKLP GC   SG++VRLNK++YGLK+A R +       S + R G  +S  DPCV R      V  ++  +VDD+++
Sbjct:  221 KADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLV--SDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILY 369          
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Match: A0A6H5KGB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB0_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.080e-30
Identity = 68/145 (46.90%), Postives = 93/145 (64.14%), Query Frame = 1
Query:    7 DEQGNMTKPKANLVGRGFSQQHSVDFLEVFDPTVAASSVKRVTAVAVENN*RLWQLDVKQAFIQVNLDFEVFMKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYKYSWINRYGAPKSDPCVFRLEKRGVVDMIICANVDDV 441
            DE G  TK KA LV RG  Q+ S+DF E+F PTV+ SSV+ + A+A E N  L   D++QAF+Q  L+ +VFM+LP+GC   SG IV+L K++YGLK+A R W     +   +  +    +D CVFRL + G V MII  +VDD+
Sbjct:   69 DEYGWPTKFKARLVARGDMQRASIDFGELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELEEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRQWHAHLTRCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVDDI 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig80723.16081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDZ0_9PHAE1.750e-3349.02CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE1.760e-3349.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE1.760e-3349.02CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JV80_9PHAE2.470e-3248.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE1.840e-3145.75Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE1.880e-3145.75Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JKF2_9PHAE2.270e-3147.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQD0_9PHAE5.650e-3145.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPV1_9PHAE1.870e-3043.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGB0_9PHAE2.080e-3046.90Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig80723contigH-paniculata_contig80723:1..447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size225
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.7505605-UTR-H-paniculata_contig80723:0..2221622931008.7505605-UTR-H-paniculata_contig80723:0..222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig80723 1..222 +
1691481548.8616672-UTR-H-paniculata_contig80723:0..2221691481548.8616672-UTR-H-paniculata_contig80723:0..222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig80723 1..222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.7702584-CDS-H-paniculata_contig80723:222..4471622931008.7702584-CDS-H-paniculata_contig80723:222..447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig80723 223..447 +
1691481548.8725688-CDS-H-paniculata_contig80723:222..4471691481548.8725688-CDS-H-paniculata_contig80723:222..447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig80723 223..447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig80723.16081.1prot_H-paniculata_contig80723.16081.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig80723 223..447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig80723.16081.1

>prot_H-paniculata_contig80723.16081.1 ID=prot_H-paniculata_contig80723.16081.1|Name=mRNA_H-paniculata_contig80723.16081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MKLPEGCRDRSGRIVRLNKAIYGLKKAGRMWSNASYKYSWINRYGAPKSD
PCVFRLEKRGVVDMIICANVDDVIF
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mRNA from alignment at H-paniculata_contig80723:1..447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig80723.16081.1 ID=mRNA_H-paniculata_contig80723.16081.1|Name=mRNA_H-paniculata_contig80723.16081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig80723:1..447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAATTGATGAGCAGGGGAATATGACTAAGCCAAAGGCAAACCTCGTAGG TCGAGGGTTTAGCCAGCAACATAGCGTTGATTTTCTCGAGGTGTTTGATC CTACGGTAGCGGCCTCCAGTGTCAAGAGGGTGACTGCTGTTGCTGTTGAA AACAACTAGAGACTGTGGCAACTAGATGTGAAACAGGCCTTTATTCAGGT GAATTTAGATTTCGAGGTGTTCATGAAGCTTCCAGAGGGTTGCCGGGACA GAAGCGGTAGAATAGTAAGGCTGAATAAGGCCATTTATGGTCTAAAGAAG GCTGGACGGATGTGGTCAAACGCCTCGTACAAATACTCGTGGATCAATCG GTATGGCGCACCCAAGTCTGACCCTTGCGTGTTCAGGCTAGAGAAACGTG GAGTGGTAGATATGATTATTTGTGCTAATGTAGACGATGTGATTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig80723:1..447+

>mRNA_H-paniculata_contig80723.16081.1 ID=mRNA_H-paniculata_contig80723.16081.1|Name=mRNA_H-paniculata_contig80723.16081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig80723:1..447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCTTCCAGAGGGTTGCCGGGACAGAAGCGGTAGAATAGTAAGGCT
GAATAAGGCCATTTATGGTCTAAAGAAGGCTGGACGGATGTGGTCAAACG
CCTCGTACAAATACTCGTGGATCAATCGGTATGGCGCACCCAAGTCTGAC
CCTTGCGTGTTCAGGCTAGAGAAACGTGGAGTGGTAGATATGATTATTTG
TGCTAATGTAGACGATGTGATTTTTATGAAGCTTCCAGAGGGTTGCCGGG
ACAGAAGCGGTAGAATAGTAAGGCTGAATAAGGCCATTTATGGTCTAAAG
AAGGCTGGACGGATGTGGTCAAACGCCTCGTACAAATACTCGTGGATCAA
TCGGTATGGCGCACCCAAGTCTGACCCTTGCGTGTTCAGGCTAGAGAAAC
GTGGAGTGGTAGATATGATTATTTGTGCTAATGTAGACGATGTGATTTTT
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