mRNA_H-paniculata_contig8051.16061.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8051.16061.1
Unique NamemRNA_H-paniculata_contig8051.16061.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8051.16061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8051contigH-paniculata_contig8051:833..2197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size933
Cds size933
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8051.16061.1prot_H-paniculata_contig8051.16061.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8051 833..2197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931005.889704-CDS-H-paniculata_contig8051:832..11991622931005.889704-CDS-H-paniculata_contig8051:832..1199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8051 833..1199 +
1691481547.6327565-CDS-H-paniculata_contig8051:832..11991691481547.6327565-CDS-H-paniculata_contig8051:832..1199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8051 833..1199 +
1622931005.9044812-CDS-H-paniculata_contig8051:1559..16481622931005.9044812-CDS-H-paniculata_contig8051:1559..1648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8051 1560..1648 +
1691481547.6409845-CDS-H-paniculata_contig8051:1559..16481691481547.6409845-CDS-H-paniculata_contig8051:1559..1648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8051 1560..1648 +
1622931005.9199972-CDS-H-paniculata_contig8051:1720..21971622931005.9199972-CDS-H-paniculata_contig8051:1720..2197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8051 1721..2197 +
1691481547.648923-CDS-H-paniculata_contig8051:1720..21971691481547.648923-CDS-H-paniculata_contig8051:1720..2197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8051 1721..2197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8051.16061.1

>prot_H-paniculata_contig8051.16061.1 ID=prot_H-paniculata_contig8051.16061.1|Name=mRNA_H-paniculata_contig8051.16061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=311bp
QETTPAPAAIAEPATAVPIATAPETSAPVGETIAETPAPVEETTAETPAP
VEDITDETPAPVQETVVETPAPAPTVAAPETEAPEAAEDTPAPATQLSSE
DTPAPTVAADATTPPGQTPSPNAGTLSPAPSELAPSAPTIAPDDALVTLS
PEATLNPGTTLSPGATLNPGATLSPEATLNPGTTLSPGATLSPGATLSPG
VTLSPGATLNPGATLSPGATLSPGTTLSPGATLSPGATLSPGATLSPGTT
LSPGTTLSPGATLSPGATLSPGATLNPGATLSPGATLSPGATLSPGTTLS
PGTTLSPGATL
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mRNA from alignment at H-paniculata_contig8051:833..2197+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8051.16061.1 ID=mRNA_H-paniculata_contig8051.16061.1|Name=mRNA_H-paniculata_contig8051.16061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1365bp|location=Sequence derived from alignment at H-paniculata_contig8051:833..2197+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAAACTACTCCCGCGCCTGCGGCCATTGCCGAACCAGCGACAGCTGT
GCCCATCGCCACCGCCCCCGAGACGTCCGCGCCAGTCGGAGAAACTATTG
CCGAAACCCCGGCGCCCGTCGAAGAAACTACAGCCGAGACCCCGGCGCCC
GTCGAAGATATTACAGACGAGACCCCGGCGCCTGTCCAAGAAACCGTGGT
CGAAACTCCCGCGCCGGCGCCTACAGTAGCGGCTCCGGAAACCGAGGCAC
CGGAGGCGGCAGAAGACACCCCAGCGCCCGCCACCCAATTATCATCAGAA
GATACGCCCGCTCCAACCGTCGCCGCAGACGCGACGACTCCACCCGGGCA
GACACCGTCCCCAAACGGTGAGCCTACTTCATCGTCGACCACTACTGCCC
CGCCAGTATCGTCCGTTACGCTCAACCCCGCAGCTACAACCCTTTCCCCC
TTATCCACCATAACCTCTTCCCCCTTATCCACCGTAACCCCTTCCCCCTT
GTCCACCACAACCTCTTCCCCCTTATCCACCACAACCCCTTCCCCCTTAT
CCACCACAACCTCTTCCCCCTTATCCACCATAACCTCTTCCCCCTTGTCC
ACCATAACCCCTTCCCCCTTGTCCACCACAACCCCTTCCCCCTCGTCCAC
CACCACCGCCGCCACCCCCGCCCCCGCCGCGCTTACCCTTGCCCCTGTAA
TGACGCCTGCCCCCTCCGCCGCCGCAGCCGGCACCCTCTCGCCTGCACCG
TCCGAGCTCGCGCCCAGTGCTCCTACTATTGCTCCTGACGACGCCCTTGT
GACGTTGAGCCCTGAGGCGACGTTAAACCCCGGTACGACGTTGAGCCCTG
GGGCGACGTTAAACCCCGGTGCGACGTTGAGCCCTGAGGCGACGTTAAAC
CCCGGTACGACGTTGAGCCCTGGGGCGACGTTAAACCCCGGTGCGACGTT
GAGCCCTGAGGCGACGTTAAACCCCGGTACGACGTTGAGCCCTGGTGCAA
CATTGAGCCCTGGGGCAACGTTAAGCCCTGGCGTAACGTTAAGCCCTGGC
GCAACGTTAAACCCTGGGGCGACGTTAAGCCCTGGCGCAACGTTAAGCCC
TGGCACAACGTTGAGCCCTGGGGCGACGTTAAGCCCTGGGGCGACGTTAA
GCCCTGGCGCAACGTTAAGCCCTGGCACAACTTTGAGCCCTGGCACAACG
TTGAGCCCTGGGGCGACGTTAAGCCCTGGCGCAACGTTAAGCCCTGGCGC
AACGTTAAACCCTGGGGCGACGTTAAGCCCTGGGGCGACGTTGAGCCCTG
GGGCGACGTTAAGCCCTGGCACAACTTTGAGCCCTGGCACAACGTTGAGC
CCTGGGGCGACGTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig8051:833..2197+

>mRNA_H-paniculata_contig8051.16061.1 ID=mRNA_H-paniculata_contig8051.16061.1|Name=mRNA_H-paniculata_contig8051.16061.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1866bp|location=Sequence derived from alignment at H-paniculata_contig8051:833..2197+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAAACTACTCCCGCGCCTGCGGCCATTGCCGAACCAGCGACAGCTGT
GCCCATCGCCACCGCCCCCGAGACGTCCGCGCCAGTCGGAGAAACTATTG
CCGAAACCCCGGCGCCCGTCGAAGAAACTACAGCCGAGACCCCGGCGCCC
GTCGAAGATATTACAGACGAGACCCCGGCGCCTGTCCAAGAAACCGTGGT
CGAAACTCCCGCGCCGGCGCCTACAGTAGCGGCTCCGGAAACCGAGGCAC
CGGAGGCGGCAGAAGACACCCCAGCGCCCGCCACCCAATTATCATCAGAA
GATACGCCCGCTCCAACCGTCGCCGCAGACGCGACGACTCCACCCGGGCA
GACACCGTCCCCAAACGCAGGAAACTACTCCCGCGCCTGCGGCCATTGCC
GAACCAGCGACAGCTGTGCCCATCGCCACCGCCCCCGAGACGTCCGCGCC
AGTCGGAGAAACTATTGCCGAAACCCCGGCGCCCGTCGAAGAAACTACAG
CCGAGACCCCGGCGCCCGTCGAAGATATTACAGACGAGACCCCGGCGCCT
GTCCAAGAAACCGTGGTCGAAACTCCCGCGCCGGCGCCTACAGTAGCGGC
TCCGGAAACCGAGGCACCGGAGGCGGCAGAAGACACCCCAGCGCCCGCCA
CCCAATTATCATCAGAAGATACGCCCGCTCCAACCGTCGCCGCAGACGCG
ACGACTCCACCCGGGCAGACACCGTCCCCAAACGCCGGCACCCTCTCGCC
TGCACCGTCCGAGCTCGCGCCCAGTGCTCCTACTATTGCTCCTGACGACG
CCCTTGTGACGTTGAGCCCTGAGCCGGCACCCTCTCGCCTGCACCGTCCG
AGCTCGCGCCCAGTGCTCCTACTATTGCTCCTGACGACGCCCTTGTGACG
TTGAGCCCTGAGGCGACGTTAAACCCCGGTACGACGTTGAGCCCTGGGGC
GACGTTAAACCCCGGTGCGACGTTGAGCCCTGAGGCGACGTTAAACCCCG
GTACGACGTTGAGCCCTGGTGCAACATTGAGCCCTGGGGCAACGTTAAGC
CCTGGCGTAACGTTAAGCCCTGGCGCAACGTTAAACCCTGGGGCGACGTT
AAGCCCTGGCGCAACGTTAAGCCCTGGCACAACGTTGAGCCCTGGGGCGA
CGTTAAGCCCTGGGGCGACGTTAAGCCCTGGCGCAACGTTAAGCCCTGGC
ACAACTTTGAGCCCTGGCACAACGTTGAGCCCTGGGGCGACGTTAAGCCC
TGGCGCAACGTTAAGCCCTGGCGCAACGTTAAACCCTGGGGCGACGTTAA
GCCCTGGGGCGACGTTGAGCCCTGGGGCGACGTTAAGCCCTGGCACAACT
TTGAGCCCTGGCACAACGTTGAGCCCTGGGGCGACGTTAGCGACGTTAAA
CCCCGGTACGACGTTGAGCCCTGGGGCGACGTTAAACCCCGGTGCGACGT
TGAGCCCTGAGGCGACGTTAAACCCCGGTACGACGTTGAGCCCTGGTGCA
ACATTGAGCCCTGGGGCAACGTTAAGCCCTGGCGTAACGTTAAGCCCTGG
CGCAACGTTAAACCCTGGGGCGACGTTAAGCCCTGGCGCAACGTTAAGCC
CTGGCACAACGTTGAGCCCTGGGGCGACGTTAAGCCCTGGGGCGACGTTA
AGCCCTGGCGCAACGTTAAGCCCTGGCACAACTTTGAGCCCTGGCACAAC
GTTGAGCCCTGGGGCGACGTTAAGCCCTGGCGCAACGTTAAGCCCTGGCG
CAACGTTAAACCCTGGGGCGACGTTAAGCCCTGGGGCGACGTTGAGCCCT
GGGGCGACGTTAAGCCCTGGCACAACTTTGAGCCCTGGCACAACGTTGAG
CCCTGGGGCGACGTTA
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