mRNA_H-paniculata_contig8028.16049.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8028.16049.1
Unique NamemRNA_H-paniculata_contig8028.16049.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8028.16049.1 vs. uniprot
Match: D8LL88_ECTSI (Rab32B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL88_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 9.960e-57
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    1 VPTVTCKVLVVGNAKCGKSSIISRFVSNRFSPDYNSTVGADYAMKDVALTDGRLARLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWK 303
            VPTVTCKVLVVGNAKCGKSSIISRFVSNRFS DYNSTVGADYAMKDV+L +GR  RLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWK
Sbjct:  347 VPTVTCKVLVVGNAKCGKSSIISRFVSNRFSSDYNSTVGADYAMKDVSLENGRQVRLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWK 447
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BLAST of mRNA_H-paniculata_contig8028.16049.1 vs. uniprot
Match: A0A836CPW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPW2_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.900e-44
Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 1 
Query:    4 PTVTCKVLVVGNAKCGKSSIISRFVSNRFSPDYNSTVGADYAMKDVALTDGRLARLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWK 303
            PTVTCKVLVVGNAKCGK+SII R+V  RF+ +Y +TVGADY  KDV   DG   RLQLWDIAGQDRFA+LTRAYFRRA+ AVVVCD+TREGT++A+ RWK
Sbjct:  361 PTVTCKVLVVGNAKCGKTSIIQRYVHGRFTSEYTTTVGADYLKKDVLAPDGTCVRLQLWDIAGQDRFARLTRAYFRRARAAVVVCDITREGTYEAVSRWK 460
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BLAST of mRNA_H-paniculata_contig8028.16049.1 vs. uniprot
Match: W7U2E0_9STRA (Rab gtpase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2E0_9STRA)

HSP 1 Score: 141 bits (355), Expect = 4.800e-38
Identity = 68/101 (67.33%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    1 VPTVTCKVLVVGNAKCGKSSIISRFVSNRFSPDYNSTVGADYAMKDVALTDGRLARLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWK 303
            VP   CK+LVVGNAKCGK+S+I RFV   F   Y STVGADY  +DV L DGR  RLQLWDIAGQDRF  LTR YF RAKG +VVCD+TRE TF+A+  WK
Sbjct:  227 VPVSICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWK 327
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BLAST of mRNA_H-paniculata_contig8028.16049.1 vs. uniprot
Match: A0A2D4BRT2_PYTIN (Rab32/38 family GTPase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRT2_PYTIN)

HSP 1 Score: 134 bits (338), Expect = 4.080e-36
Identity = 66/98 (67.35%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:   10 VTCKVLVVGNAKCGKSSIISRFVSNRFSPDYNSTVGADYAMKDVALTDGRLARLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWK 303
            V  KVLVVGNA+CGK+S I RFVS  FS +Y ST+GAD+  K V   D     LQLWDIAGQDRFAKLTRAYFR AKGA++VCD+TRE T DA+V WK
Sbjct:  136 VIMKVLVVGNARCGKTSTIRRFVSKDFSDEYVSTIGADFVEKVVDYDDNLRLHLQLWDIAGQDRFAKLTRAYFRDAKGALIVCDITRENTIDAVVTWK 233
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BLAST of mRNA_H-paniculata_contig8028.16049.1 vs. uniprot
Match: K3X7B8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7B8_GLOUD)

HSP 1 Score: 132 bits (333), Expect = 1.990e-35
Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:    7 TVTCKVLVVGNAKCGKSSIISRFVSNRFSPDYNSTVGADYAMKDVALTDGRLARLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWK 303
            TV  KVL+VGNA+CGK+S I +FVS +FS +Y ST+GAD+  K +         LQLWDIAGQDRFAKLTRAYFR AKGA++VCD+TRE T DAIV WK
Sbjct:  123 TVIMKVLIVGNARCGKTSTIRQFVSKQFSENYVSTIGADFVEKIIEYDAQLKISLQLWDIAGQDRFAKLTRAYFREAKGALIVCDITRENTIDAIVNWK 221
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BLAST of mRNA_H-paniculata_contig8028.16049.1 vs. uniprot
Match: A0A662X9X8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9X8_9STRA)

HSP 1 Score: 131 bits (329), Expect = 7.490e-35
Identity = 63/101 (62.38%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 VPTVTCKVLVVGNAKCGKSSIISRFVSNRFSPDYNSTVGADYAMKDVALTDGRLARLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWK 303
            V TV  KVL+VGNA+CGK+S I RF  +RF  +Y ST+GAD+  K V   D     LQLWDIAGQDRFAK TR YFR AKGAV+VCD+TR  T DA+V WK
Sbjct:  131 VETVIMKVLIVGNARCGKTSTIRRFTQDRFCEEYVSTIGADFVEKLVEYDDRLTISLQLWDIAGQDRFAKFTRGYFREAKGAVIVCDITRANTIDAVVNWK 231
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BLAST of mRNA_H-paniculata_contig8028.16049.1 vs. uniprot
Match: A0A8K1FMK4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMK4_PYTOL)

HSP 1 Score: 130 bits (326), Expect = 9.370e-35
Identity = 62/95 (65.26%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:   19 KVLVVGNAKCGKSSIISRFVSNRFSPDYNSTVGADYAMKDVALTDGRLARLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWK 303
            KVLVVGNA+CGK+S I RFVS +FS  Y ST+GAD+  K +   D     LQLWDIAGQDRFAKLTRAYFR AKGA++VCD+TR  T DA+  WK
Sbjct:   97 KVLVVGNARCGKTSTIRRFVSKQFSDHYVSTIGADFVEKVIDYDDSLRLHLQLWDIAGQDRFAKLTRAYFREAKGALIVCDITRANTIDAVETWK 191
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BLAST of mRNA_H-paniculata_contig8028.16049.1 vs. uniprot
Match: D0NCF8_PHYIT (Rab32/38 family GTPase, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NCF8_PHYIT)

HSP 1 Score: 127 bits (318), Expect = 1.450e-34
Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:   19 KVLVVGNAKCGKSSIISRFVSNRFSPDYNSTVGADYAMKDVALTDGRLARLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWK 303
            KVL+VGNA+CGK+S I RF  ++F+ +Y ST+GAD+  K +A  +     LQLWDIAGQDRFAK TR YFR A+GAV+VCD+TR  T DA+V WK
Sbjct:    2 KVLIVGNARCGKTSTIRRFTQDKFNEEYVSTIGADFVEKIIAYDEQLTISLQLWDIAGQDRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWK 96
[Close]
BLAST of mRNA_H-paniculata_contig8028.16049.1 vs. uniprot
Match: D0NC70_PHYIT (Rab32/38 family GTPase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NC70_PHYIT)

HSP 1 Score: 125 bits (314), Expect = 5.810e-34
Identity = 57/95 (60.00%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:   19 KVLVVGNAKCGKSSIISRFVSNRFSPDYNSTVGADYAMKDVALTDGRLARLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWK 303
            KVL+VGNA+CGK+S I RF  + F+ +Y ST+GAD+  K +A  +     LQLWDIAGQDRFAK TR YFR A+GAV+VCD+TR  T DA+V WK
Sbjct:    2 KVLIVGNARCGKTSTIRRFTQDDFNEEYVSTIGADFVEKIIAYDEQLTISLQLWDIAGQDRFAKFTRGYFREARGAVIVCDITRANTIDAVVNWK 96
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BLAST of mRNA_H-paniculata_contig8028.16049.1 vs. uniprot
Match: A0A5D6Y1Q7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1Q7_9STRA)

HSP 1 Score: 129 bits (324), Expect = 6.280e-34
Identity = 63/99 (63.64%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    7 TVTCKVLVVGNAKCGKSSIISRFVSNRFSPDYNSTVGADYAMKDVALTDGRLARLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRWK 303
            TV  KVLVVGNA+CGK+S I +FVS +FS  Y ST+GAD+  K +         LQLWDIAGQDRFAKLTRAYFR AKGA++VCD+TRE T DA+  WK
Sbjct:  152 TVIMKVLVVGNARCGKTSTIRQFVSRQFSESYVSTIGADFVEKVIEYDAQLKISLQLWDIAGQDRFAKLTRAYFRDAKGALIVCDITRENTVDAVTTWK 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8028.16049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL88_ECTSI9.960e-5794.06Rab32B, RAB family GTPase n=2 Tax=Ectocarpus TaxID... [more]
A0A836CPW2_9STRA4.900e-4474.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U2E0_9STRA4.800e-3867.33Rab gtpase n=1 Tax=Nannochloropsis gaditana TaxID=... [more]
A0A2D4BRT2_PYTIN4.080e-3667.35Rab32/38 family GTPase, putative n=1 Tax=Pythium i... [more]
K3X7B8_GLOUD1.990e-3564.65Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662X9X8_9STRA7.490e-3562.38Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A8K1FMK4_PYTOL9.370e-3565.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0NCF8_PHYIT1.450e-3460.00Rab32/38 family GTPase, putative n=1 Tax=Phytophth... [more]
D0NC70_PHYIT5.810e-3460.00Rab32/38 family GTPase, putative n=2 Tax=Phytophth... [more]
A0A5D6Y1Q7_9STRA6.280e-3463.64Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8028contigH-paniculata_contig8028:9874..10666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue4e-47
Seed eggNOG ortholog2880.D8LL88
KEGG koko:K07918
Hectar predicted targeting categoryother localisation
EggNOG free text desc.BLOC-2 complex binding
EggNOG OGsKOG4423@1,KOG4423@2759
Ec32 ortholog descriptionRab32B, RAB family GTPase
Ec32 orthologEc-27_001690.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931003.6249652-CDS-H-paniculata_contig8028:9873..100351622931003.6249652-CDS-H-paniculata_contig8028:9873..10035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8028 9874..10035 +
1691481546.646678-CDS-H-paniculata_contig8028:9873..100351691481546.646678-CDS-H-paniculata_contig8028:9873..10035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8028 9874..10035 +
1622931003.646599-CDS-H-paniculata_contig8028:10525..106661622931003.646599-CDS-H-paniculata_contig8028:10525..10666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8028 10526..10666 +
1691481546.6600955-CDS-H-paniculata_contig8028:10525..106661691481546.6600955-CDS-H-paniculata_contig8028:10525..10666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8028 10526..10666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8028.16049.1prot_H-paniculata_contig8028.16049.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8028 9874..10666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8028.16049.1

>prot_H-paniculata_contig8028.16049.1 ID=prot_H-paniculata_contig8028.16049.1|Name=mRNA_H-paniculata_contig8028.16049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
VPTVTCKVLVVGNAKCGKSSIISRFVSNRFSPDYNSTVGADYAMKDVALT
DGRLARLQLWDIAGQDRFAKLTRAYFRRAKGAVVVCDVTREGTFDAIVRW
K
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mRNA from alignment at H-paniculata_contig8028:9874..10666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8028.16049.1 ID=mRNA_H-paniculata_contig8028.16049.1|Name=mRNA_H-paniculata_contig8028.16049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=793bp|location=Sequence derived from alignment at H-paniculata_contig8028:9874..10666+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCCACCGTGACTTGCAAGGTATTGGTCGTGGGCAACGCCAAGTGCGG
CAAGTCTTCGATCATCAGCCGATTCGTTAGCAATCGCTTCAGTCCGGACT
ACAACTCAACGGTGGGCGCGGACTACGCCATGAAGGACGTCGCGCTAACG
GACGGACGTTTGGTGGGTCCAAGCTTCATCAGTTTTCTCCTTCAGTGTTG
CACTACTATGGAACTGTGTGGATGCAAGACTGCACGTTTCATCCTCATGC
AGTAACTATAGTACTGTCATGCCTTGACTCTCTGTGTTGGCTTTCTGTAT
TTGTTTTGCTCAATGTATAGATGGGATGACTGTTTGTTCGGCTTCCTTTG
GGTACTTCGTGCTGTTTCTGTGTAGAAAATTGTACTGCGCGTGGCGGTAC
ACGTATGAACCATCTTGTGCCCCTGGAGCAAAAGCTTCTGGTGGGAAAAC
AAAAAGAAAACATTGATTTTGTCGAAAGTGGTGTATGAATTTGTCGTCGC
TAGCGCGTTCGTTTCCACGTGAAGACATCTTCGTGTTTATTCGAACAGCA
CACAAGAGTTCAACGTAAACGTAAGGTGATCGAGAATAAGTTGTTTGCTG
TTCACGTTGATGGCAGGTTTAACCGCCCTCCTCTACACGCTTTTTAACAC
AGGCTCGCCTTCAGCTGTGGGACATCGCTGGTCAGGATCGATTCGCGAAG
CTCACGAGAGCCTATTTCCGACGGGCGAAAGGAGCTGTCGTTGTTTGCGA
CGTGACACGTGAAGGGACCTTCGATGCGATCGTCAGGTGGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8028:9874..10666+

>mRNA_H-paniculata_contig8028.16049.1 ID=mRNA_H-paniculata_contig8028.16049.1|Name=mRNA_H-paniculata_contig8028.16049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig8028:9874..10666+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCCACCGTGACTTGCAAGGTATTGGTCGTGGGCAACGCCAAGTGCGG
CAAGTCTTCGATCATCAGCCGATTCGTTAGCAATCGCTTCAGTCCGGACT
ACAACTCAACGGTGGGCGCGGACTACGCCATGAAGGACGTCGCGCTAACG
GACGGACGTTTGGTGCCCACCGTGACTTGCAAGGTATTGGTCGTGGGCAA
CGCCAAGTGCGGCAAGTCTTCGATCATCAGCCGATTCGTTAGCAATCGCT
TCAGTCCGGACTACAACTCAACGGTGGGCGCGGACTACGCCATGAAGGAC
GTCGCGCTAACGGACGGACGTTTGGCTCGCCTTCAGCTGTGGGACATCGC
TGGTCAGGATCGATTCGCGAAGCTCACGAGAGCCTATTTCCGACGGGCGA
AAGGAGCTGTCGTTGTTTGCGACGTGACACGTGAAGGGACCTTCGATGCG
ATCGTCAGGTGGAAGGCTCGCCTTCAGCTGTGGGACATCGCTGGTCAGGA
TCGATTCGCGAAGCTCACGAGAGCCTATTTCCGACGGGCGAAAGGAGCTG
TCGTTGTTTGCGACGTGACACGTGAAGGGACCTTCGATGCGATCGTCAGG
TGGAAG
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