mRNA_H-paniculata_contig8022.16044.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8022.16044.1
Unique NamemRNA_H-paniculata_contig8022.16044.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8022.16044.1 vs. uniprot
Match: D8LTZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ0_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.190e-24
Identity = 101/258 (39.15%), Postives = 121/258 (46.90%), Query Frame = 3 
Query:  420 ALRCFSCHACSAGEVLSARMQQCPPTEKFCAAVYRPRVGPTGSSFISVDRGCASSVHAVCLS----EGSIVTANTEDQ---TQTYPQTGTEDTKEGNGAKGSDDNKETAGSLIPSSQLPLPPSTAAATTAASVERH---CCSTDLCNGSTMRWDRGVSGTLEMEGYRHSEEHRRNLMEGTRSSTSGGSRKDYAHA----AGWRERPWGS----GEQEVG--NNSAPREG--GGSRLATVLVIVGTFAQVLWLAGSFLQ 1127
            AL+CFSC  CS G  LSA+ QQCPP E FCAAV RPR  P      SVDRGCASS++  C      + S+      ++   T T P  G    +E +G             L P S                       CCSTD CNG               EG R SEEH R+LMEGT     G SR   A      AG R    G+    GE+ V   ++++ R G  GGSR ATVLVIVGTF+QVLWL G  ++
Sbjct:   34 ALQCFSCTDCSVGGALSAQKQQCPPGEAFCAAVSRPRTSPLVYQSSSVDRGCASSLNVACEQLNPPQSSLARKEIAEEAGGTATTPAVGDHGHRESDGQN-----------LRPGSXXXXXXXXXXXXXXXXHHLQPLLCCSTDFCNGLE---------DARREGQRRSEEHLRSLMEGTPRKKVGFSRGSLADGGIVTAGGRGSGVGTAAAVGERMVDGEDDNSARGGCEGGSRFATVLVIVGTFSQVLWLVGRLIE 271
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BLAST of mRNA_H-paniculata_contig8022.16044.1 vs. uniprot
Match: A0A6H5JS55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS55_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 6.480e-23
Identity = 102/270 (37.78%), Postives = 123/270 (45.56%), Query Frame = 3 
Query:  420 ALRCFSCHACSAGEVLSARMQQCPPTEKFCAAVYRPRVGPTGSSFISVDRGCASSVHAVCLS----EGSIVTANTEDQ---TQTYPQTGTEDTKEGNG------------AKGSDDNKETAGSLIPSSQLPLPPSTAAATTAASVERHCCSTDLCNGSTMRWDRGVSGTLEMEGYRHSEEHRRNLMEGTRSSTSGGSRKDYAH----AAGWR----------ERPWGSGEQEVGNNSAPREG-GGSRLATVLVIVGTFAQVLWLAGSFLQ 1127
            AL+ FSC  CS G  LSA+ QQCPP E FCAAV RPR  P      SVDRGCASS+H  C      + S+   + E++   + T P  G    +E +G            ++ SD   +  G  +     PL                CCSTD+CNG               EG R S EH R LMEG        SR   A     AAG R          E+    GE +   NSA   G GGSR ATVLVIVGTF+QVLWL G  ++
Sbjct:   76 ALQYFSCTDCSVGGALSAQKQQCPPGETFCAAVSRPRTSPLVYQSSSVDRGCASSLHVACEQLNPPQSSLARKDIEEKAGKSATTPAVGDHGHRESDGQNFLPGNSSSRSSRSSDGGSQNDGHHL----QPL---------------MCCSTDICNGLE---------DARREGQRRSGEHLRTLMEGAPRKEVRSSRDSPADGGIVAAGGRGSGVGTAAAVEKRMVDGEDD---NSARGGGVGGSRFATVLVIVGTFSQVLWLVGRLIE 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8022.16044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTZ0_ECTSI3.190e-2439.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS55_9PHAE6.480e-2337.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8022contigH-paniculata_contig8022:1102..4659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003820.1
Exons3
Model size2055
Cds size873
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8022.16044.1prot_H-paniculata_contig8022.16044.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8022 2027..4402 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931003.0364664-UTR-H-paniculata_contig8022:1101..20261622931003.0364664-UTR-H-paniculata_contig8022:1101..2026Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8022 1102..2026 -
1691481546.35434-UTR-H-paniculata_contig8022:1101..20261691481546.35434-UTR-H-paniculata_contig8022:1101..2026Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8022 1102..2026 -
1622931003.102723-UTR-H-paniculata_contig8022:4402..46591622931003.102723-UTR-H-paniculata_contig8022:4402..4659Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8022 4403..4659 -
1691481546.4035351-UTR-H-paniculata_contig8022:4402..46591691481546.4035351-UTR-H-paniculata_contig8022:4402..4659Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8022 4403..4659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931003.0519729-CDS-H-paniculata_contig8022:2026..26411622931003.0519729-CDS-H-paniculata_contig8022:2026..2641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8022 2027..2641 -
1691481546.36564-CDS-H-paniculata_contig8022:2026..26411691481546.36564-CDS-H-paniculata_contig8022:2026..2641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8022 2027..2641 -
1622931003.0737457-CDS-H-paniculata_contig8022:3792..38931622931003.0737457-CDS-H-paniculata_contig8022:3792..3893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8022 3793..3893 -
1691481546.3755457-CDS-H-paniculata_contig8022:3792..38931691481546.3755457-CDS-H-paniculata_contig8022:3792..3893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8022 3793..3893 -
1622931003.088757-CDS-H-paniculata_contig8022:4245..44021622931003.088757-CDS-H-paniculata_contig8022:4245..4402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8022 4246..4402 -
1691481546.3877792-CDS-H-paniculata_contig8022:4245..44021691481546.3877792-CDS-H-paniculata_contig8022:4245..4402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8022 4246..4402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8022.16044.1

>prot_H-paniculata_contig8022.16044.1 ID=prot_H-paniculata_contig8022.16044.1|Name=mRNA_H-paniculata_contig8022.16044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=291bp
MDERKNSLFFREMKTITLLGGRSRGQRKRRTALRINIFLGSLMLLGGPFN
NTASALRCFSCHACSAGEVLSARMQQCPPTEKFCAAVYRPRVGPTGSSFI
SVDRGCASSVHAVCLSEGSIVTANTEDQTQTYPQTGTEDTKEGNGAKGSD
DNKETAGSLIPSSQLPLPPSTAAATTAASVERHCCSTDLCNGSTMRWDRG
VSGTLEMEGYRHSEEHRRNLMEGTRSSTSGGSRKDYAHAAGWRERPWGSG
EQEVGNNSAPREGGGSRLATVLVIVGTFAQVLWLAGSFLQ*
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mRNA from alignment at H-paniculata_contig8022:1102..4659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8022.16044.1 ID=mRNA_H-paniculata_contig8022.16044.1|Name=mRNA_H-paniculata_contig8022.16044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3558bp|location=Sequence derived from alignment at H-paniculata_contig8022:1102..4659- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTACTAGCAACGGACTAAATTCAACACAGATCAGCAGAGAGTAAGATGT
CTAGACTCTCGAGTGAGGAGCTCGGTCTCACATGAGCTACTCGCTAATAT
TGTCATAATCCAATGACCCACCTCACATCGCGTGTGACGCTCCTAGAACA
ATATCGATGTTGACAGGTCTCGGCGGTGCCCATCAAGTCTCTACATATTT
CGATCGTATATCCGTTGTGTAAGGTGAAAGTCACCGTACGGCCTACCCAC
CCGAACCATGGACGAACGCAAAAATTCTCTATTTTTTCGTGAAATGAAGA
CGATTACGTTGTTAGGTGGAAGAAGTCGCGGCCAACGCAAGAGGAGAACA
GCGCTGCGGATAAATATCTTCTTGGGATCGCTGATGCTGCTGGGGGGTCC
GTTTAACAACACAGGTGCGCCTCTATTGTTGGGCTTTATTGTGCTGGGAT
TTCCTTGGTACGATAGTGGCTTTCGTGCGATGTACTGTTGTATCGTTTTT
GCTGCACAAACGATGGACCAAGGAACTATGATTGTCACCTGCAGACCCGT
AGAGCACACAATTTGCTGATGTAAGCTTGGGTGCATTGCCACACCCACCG
CGCACACAAGTCACCTAAAGAGAGTAAGAAAGAGGCCATCCACGTAGGGT
ACATAGCATGCGGCCAATATTTTCCTGCCCACAAACCTCAATAAATATTC
CCTCCTCTTCTTTTTTTGTTGCTCTTTCCTTTTGTTTCCCCCCTCCCACA
CCTCAATCGAGGATAGCATCAGCATTGAGATGTTTCTCATGTCACGCTTG
CTCCGCTGGAGAGGTGCTATCGGCCCGAATGCAACAGTGCCCACCGACGG
AAAAATTCTGCGCTGCGGTGAGCATTGAACGCTGGCCACTTAGACCCGGG
TGTCCTTCAATGTTTTTGTCGGTGTTTGAGGCTGTGTTCAGCCACTTTTG
GTGTTTATTACTGTGTTGTAGTCGAGGTCGGACGAGTCTCTGTTTCGTAC
CTGCCTCCCCAAAGAGCGGGTCATTTTGGGGGTGATTTGATCCAGATCGT
GCGTCAAATGTACAGGGTACTTGTAGAGAAAATTTTATATACAGTATGTT
GACGGTAAAGCGATGATTGCGTGAATACCCATAAGAGAAGAAGCGGTCAA
GACGTCACCACATCAACATGCAGAAGGCAAACCGAATCCATCCACCTTAG
AGAAGCGAATTTTCCCGCACTACTGCGCGTTGCAGCGATACACACAGTAG
TGGGTAAGTCAGGTTCCGATCGTTCCTCTATATCTGCTGGAAAAGGCAAC
GAGGCCGATTTTGAACCTACAGTATTTTGTATGCACACAGCACATCCTCA
CTGCCTATGGCGTCTTGGGGCCTCTCCACCATCTTCTGCTATAGAGAACC
CAGAAGACTCTCCAAATATCGCGTCCATCGACTGTTGTAATGCCCGTCAT
ATCGTTCCGTTGGGTGTAACTCCCCGGGGTCATGTCAACGTGTGTGAACC
TCGTGAGAACCGTCCGGGCGATTGGTTTTTTCCCCCGAAAGTATTAAATA
GTAATGTTTTTCACATGCAAATATTGATTCTTGGCCCGTGCTCATAGATG
CTGTCGAGGCTGGACATCATCCATCGCCCCTGCGTGCTCCCGCTTTGCGT
GCGATCTCGGTGTAAGTTGTGACTTGCCGGATTTTTTTTACACTATTGCC
CTGGGACCCCTAAGTCAAATTACGTTTCAAACAACGCCCCGTGGCCGGTC
GTAACGTCCCCTGCAAAAAGATCTTGGCAAAAAATCGCTGCCCCCCGGGC
TGTTATGAGGTGGTTTTCCGGTACTACGCAGACCAGTATAGGACACTAGA
TCTGGCCTTTGCCTGACATTACAATACGAACTACAACACAATTCATCGCG
GCTCATGTAGCGTTGAACATGTCCACAGCCAAAAGCACACGCAGCAGTAA
ATCAATCGCCGCCGCCCCCTCGTCCCTTCCACCCTCTTTTCTTGCTTCCC
CGCAATATGGACTACTAGGTGTATCGACCACGGGTTGGCCCAACGGGGTC
GTCTTTTATATCAGTCGACCGCGGATGCGCGTCCTCCGTGCATGCCGTGT
GCTTATCGGAAGGATCAATCGTGACAGCAAATACAGAAGACCAAACGCAA
ACGTACCCTCAAACCGGAACCGAAGACACAAAGGAAGGGAATGGCGCAAA
GGGAAGCGATGACAACAAGGAGACTGCCGGATCACTGATCCCATCGTCGC
AACTCCCACTGCCACCATCAACAGCGGCCGCCACAACAGCAGCATCAGTA
GAAAGACACTGCTGCTCCACAGATCTGTGCAATGGATCGACCATGCGTTG
GGACAGGGGCGTGTCGGGGACGCTAGAGATGGAGGGTTATCGGCATTCCG
AGGAGCACAGACGAAATCTCATGGAAGGGACGCGTAGTAGTACTAGTGGG
GGTAGTAGAAAGGACTATGCGCATGCGGCGGGTTGGAGAGAAAGACCGTG
GGGATCGGGGGAACAGGAAGTGGGGAACAACTCGGCACCGAGGGAGGGAG
GGGGGTCACGACTTGCCACGGTCCTTGTGATCGTTGGCACGTTCGCGCAG
GTTTTGTGGCTTGCAGGCAGCTTTTTGCAATAACAGTCTTGGTGGTACTG
GGTGTTGAGATGTGCAGGGTTTACAAAGTGCTTTGGACCCATCGGGTTTA
TCGTGATGTAAAAAATGTGAATGGTGGAAGAACCCAGGTCTCGTGTCGCG
TTTGATGCTAAATCACGGCTCGACGTGCTGTAGGTGTTATTCGCGTTTTG
AGGATGATTTGTCGTATTGATCGGTTCACGCTTGTCTGGTGCAGTCTGCC
GCGCCGTTGACTCGGACTGTTGTGGTTGGTGGATATCGAGAACGAGGTGG
AATTTGTGTAGTACGATCAAAGCGCGTGATGTTCCAGTAGATTCAGTGTG
TGAAGTCATGTACGAAGTAGCACTTTGTGTAGGTGTTTATATATAGGGAG
AGAGTCCACATGACTTGGAAGGGGCTTGTAGATCGAGTTACTTCATACCT
CCGTTGACTGGGAACAAAAACTAGTCGCGAGCGTTGCGTTAGTGCGGTTG
CAAAATCAGGTCCGTCGACGGCGGCGACCATCATGACCGAAGCAGCCGAT
GAAACTCCTCCCCATCATCACCCGGTGATGCCCTGCCATCACCACCTTAG
GGGTTAAATCCTGTTAGCCATACTTTGTAACCACCATATTTTTCATGGAT
ACTGTAATTTCCTGTTTCATCATCTCCAGCTAGTCGACAATATCAATCTG
AGAGTCCCCTGACCGTAGCCAAAGCGCGTACTCGTAGTCAGTACTAGGCT
TCAGGGAGTGTCAGGGGTTCCAAAAATGTAAAACCACCCCGATACCTCTC
CCCCTTGGTTAGACTATGACCATGTAGAAAAGATATGTGAATTGGACAGA
GTTAGTAATTTGCAATCCTGCTCGAGTCTGTCGTTGACATCGGTGGATTT
TAATATTTTTCGAAAATGTCTGAGAAGAAGCCCCATATTAAGGGGATTTT
GGTTTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8022:1102..4659-

>mRNA_H-paniculata_contig8022.16044.1 ID=mRNA_H-paniculata_contig8022.16044.1|Name=mRNA_H-paniculata_contig8022.16044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at H-paniculata_contig8022:1102..4659- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGAACGCAAAAATTCTCTATTTTTTCGTGAAATGAAGACGATTAC
GTTGTTAGGTGGAAGAAGTCGCGGCCAACGCAAGAGGAGAACAGCGCTGC
GGATAAATATCTTCTTGGGATCGCTGATGCTGCTGGGGGGTCCGTTTAAC
AACACAGATGGACGAACGCAAAAATTCTCTATTTTTTCGTGAAATGAAGA
CGATTACGTTGTTAGGTGGAAGAAGTCGCGGCCAACGCAAGAGGAGAACA
GCGCTGCGGATAAATATCTTCTTGGGATCGCTGATGCTGCTGGGGGGTCC
GTTTAACAACACAGCATCAGCATTGAGATGTTTCTCATGTCACGCTTGCT
CCGCTGGAGAGGTGCTATCGGCCCGAATGCAACAGTGCCCACCGACGGAA
AAATTCTGCGCTGCGCATCAGCATTGAGATGTTTCTCATGTCACGCTTGC
TCCGCTGGAGAGGTGCTATCGGCCCGAATGCAACAGTGCCCACCGACGGA
AAAATTCTGCGCTGCGGTGTATCGACCACGGGTTGGCCCAACGGGGTCGT
CTTTTATATCAGTCGACCGCGGATGCGCGTCCTCCGTGCATGCCGTGTGC
TTATCGGAAGGATCAATCGTGACAGCAAATACAGAAGACCAAACGCAAAC
GTACCCTCAAACCGGAACCGAAGACACAAAGGAAGGGAATGGCGCAAAGG
GAAGCGATGACAACAAGGAGACTGCCGGATCACTGATCCCATCGTCGCAA
CTCCCACTGCCACCATCAACAGCGGCCGCCACAACAGCAGCATCAGTAGA
AAGACACTGCTGCTCCACAGATCTGTGCAATGGATCGACCATGCGTTGGG
ACAGGGGCGTGTCGGGGACGCTAGAGATGGAGGGTTATCGGCATTCCGAG
GAGCACAGACGAAATCTCATGGAAGGGACGCGTAGTAGTACTAGTGGGGG
TAGTAGAAAGGACTATGCGCATGCGGCGGGTTGGAGAGAAAGACCGTGGG
GATCGGGGGAACAGGAAGTGGGGAACAACTCGGCACCGAGGGAGGGAGGG
GGGTCACGACTTGCCACGGTCCTTGTGATCGTTGGCACGTTCGCGCAGGT
TTTGTGGCTTGCAGGCAGCTTTTTGCAATAAGTGTATCGACCACGGGTTG
GCCCAACGGGGTCGTCTTTTATATCAGTCGACCGCGGATGCGCGTCCTCC
GTGCATGCCGTGTGCTTATCGGAAGGATCAATCGTGACAGCAAATACAGA
AGACCAAACGCAAACGTACCCTCAAACCGGAACCGAAGACACAAAGGAAG
GGAATGGCGCAAAGGGAAGCGATGACAACAAGGAGACTGCCGGATCACTG
ATCCCATCGTCGCAACTCCCACTGCCACCATCAACAGCGGCCGCCACAAC
AGCAGCATCAGTAGAAAGACACTGCTGCTCCACAGATCTGTGCAATGGAT
CGACCATGCGTTGGGACAGGGGCGTGTCGGGGACGCTAGAGATGGAGGGT
TATCGGCATTCCGAGGAGCACAGACGAAATCTCATGGAAGGGACGCGTAG
TAGTACTAGTGGGGGTAGTAGAAAGGACTATGCGCATGCGGCGGGTTGGA
GAGAAAGACCGTGGGGATCGGGGGAACAGGAAGTGGGGAACAACTCGGCA
CCGAGGGAGGGAGGGGGGTCACGACTTGCCACGGTCCTTGTGATCGTTGG
CACGTTCGCGCAGGTTTTGTGGCTTGCAGGCAGCTTTTTGCAATAA
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