mRNA_H-paniculata_contig8012.16040.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8012.16040.1
Unique NamemRNA_H-paniculata_contig8012.16040.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8012.16040.1 vs. uniprot
Match: A0A6H5JGF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF5_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.940e-31
Identity = 95/229 (41.48%), Postives = 116/229 (50.66%), Query Frame = 3 
Query:    9 STYKRGSMGDSDEEVELQRRALALTAMA--------GAGVTPSGSAGEAWG-----TVPTWARVARLQALQSLALKAPRNKELRAALYNINIAQVLRTLCLELDVTTLLLQSFAFRADPAATPRALACDGRTDIQWLVSQRRKAAAATGRGGARARGAGEGGSVTGAEPATVGAREIAGGRWLSTLQSGFTPPLKGVL-VGVVLPTVAPLFRARAN---RGGGGGDERG 644
            S+Y RG M D  EE ELQRRA+AL  M         G GV   G     +       VP WA+VA+ QALQSLAL+AP +K LR ALY +NIAQVLRTLCLE+D  +LLLQ+ A   D A   RAL C+GR DI+WLV                                   +R  AG RWL  L  G T P  G L +  ++  + PL  + A+   RG GG +E G
Sbjct:  460 SSYTRGPMSDWTEETELQRRAVALACMEPPRTERRRGGGVGVRGIVRMPFSYTRGVVVPVWAQVAKAQALQSLALRAPCDKNLRVALYEVNIAQVLRTLCLEVDEASLLLQASAVGEDKAEAARALGCEGRGDIKWLVES------------------------------MASSRGEAGRRWLGWLNDGLTLPFSGTLTLAGLIAVLRPLMASNASGSGRGRGGEEEGG 658
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BLAST of mRNA_H-paniculata_contig8012.16040.1 vs. uniprot
Match: D8LU93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU93_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.770e-30
Identity = 95/234 (40.60%), Postives = 116/234 (49.57%), Query Frame = 3 
Query:    3 GGSTYKRGSMGDSDEEVELQRRALALTAM----------AGAGVTPSGSAGEAWG-----TVPTWARVARLQALQSLALKAPRNKELRAALYNINIAQVLRTLCLELDVTTLLLQSFAFRADPAATPRALACDGRTDIQWLVSQRRKAAAATGRGGARARGAGEGGSVTGAEPATVGAREIAGGRWLSTLQSGFTPPLKGVL-VGVVLPTVAPLFRARANRGGGG--GDERGRV 650
            G S+Y RG M D  EE ELQRRA+AL  M           G GV   G     +       VP WA+VA+ QALQSLALKAP +K LR ALY +NIAQVLRTLCLE+D  +LLLQ+     D A   RAL C+GR DI+WLV                                   +R  AG RWL  L  G + P  G L +  ++  + PL  + A+  G G  G+E G V
Sbjct:  360 GASSYTRGPMSDWTEETELQRRAVALACMEPPRTERRRGGGVGVGVGGIIRMPFSYTRGVVVPVWAQVAKAQALQSLALKAPCDKNLRVALYEVNIAQVLRTLCLEVDEASLLLQASVVGEDKAEAARALGCEGRRDIKWLVES------------------------------MASSRGEAGRRWLGWLNDGLSLPFSGTLTLAGLVAVLRPLMTSNASGSGRGRGGEEDGGV 563
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8012.16040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGF5_9PHAE6.940e-3141.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU93_ECTSI1.770e-3040.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8012contigH-paniculata_contig8012:4778..6403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_004150.1
Exons2
Model size651
Cds size621
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8012.16040.1prot_H-paniculata_contig8012.16040.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8012 4778..5398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931002.431503-CDS-H-paniculata_contig8012:4777..53981622931002.431503-CDS-H-paniculata_contig8012:4777..5398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8012 4778..5398 -
1691481546.055094-CDS-H-paniculata_contig8012:4777..53981691481546.055094-CDS-H-paniculata_contig8012:4777..5398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8012 4778..5398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931002.4933152-UTR-H-paniculata_contig8012:5398..54031622931002.4933152-UTR-H-paniculata_contig8012:5398..5403Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8012 5399..5403 -
1691481546.0721242-UTR-H-paniculata_contig8012:5398..54031691481546.0721242-UTR-H-paniculata_contig8012:5398..5403Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8012 5399..5403 -
1622931002.510402-UTR-H-paniculata_contig8012:6379..64031622931002.510402-UTR-H-paniculata_contig8012:6379..6403Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8012 6380..6403 -
1691481546.0825918-UTR-H-paniculata_contig8012:6379..64031691481546.0825918-UTR-H-paniculata_contig8012:6379..6403Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8012 6380..6403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8012.16040.1

>prot_H-paniculata_contig8012.16040.1 ID=prot_H-paniculata_contig8012.16040.1|Name=mRNA_H-paniculata_contig8012.16040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
MGDSDEEVELQRRALALTAMAGAGVTPSGSAGEAWGTVPTWARVARLQAL
QSLALKAPRNKELRAALYNINIAQVLRTLCLELDVTTLLLQSFAFRADPA
ATPRALACDGRTDIQWLVSQRRKAAAATGRGGARARGAGEGGSVTGAEPA
TVGAREIAGGRWLSTLQSGFTPPLKGVLVGVVLPTVAPLFRARANRGGGG
GDERGRV
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mRNA from alignment at H-paniculata_contig8012:4778..6403-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8012.16040.1 ID=mRNA_H-paniculata_contig8012.16040.1|Name=mRNA_H-paniculata_contig8012.16040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig8012:4778..6403- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGAGGATCCACGTACAAAAGAGGTACAGAGATTCGTGTGTATGTGTTT
TCTCAATTTAAGTTATTCGATTGTTTTTTGTTGGATGGAGTTTTTTTTTC
ATCCTGTTTTCTTTGTCTTTAATGTGGTCATTCGATGGTCCCCTCACATG
AGAGAGACGGACAGAGACAGGGACAGACAAAGAATAGATAGACAGAGGGA
TATATAGAGATATAGAGATAAAAGCGTCCGCTCTGCGGTAATGGTTTTTT
GGCACAAGGGGTGTAGTGTGTGGCATGCATTCGCTGGCTCCGTGGGACTG
ATGAAGGCGTCATCAGCGAGTCGAAAGAAGCTATTTATAAAACTCTTTCG
ATTATGGGACAGAAATGCCACCGGATGGTGCTGTCTAAGAACCCCAAGAA
CGTTGGTCAATTTTTTTATTACAATCCTCCATCTCATCATCTTTCGCGTG
TGGGGCCGACGAAGTTTCAACGATATATATATATATATATATGGTTGTTT
CCCCTACCGTTTTTACGGCCGTGCTTTGCTCCAATCTTTTACTTTTTTTT
TTTTTTTCTCGGTGATCTAGGTCGGGGATTCGATTTTATTCGAACTGATG
ACCTCATGTGATCCCATGGCATGGTTGTCAGGAGCCCTTTGAGGCTACGC
TACTATTGTGAGAAAACACCATTTGTCTTTTTACAGACACTCATGGGAAT
TTTATCCTTTCATCACATGGTGTAAATAGAACTCTACACTCGTAGCAGGC
CAATGGGCCCGTAATTCAGACCCATCAGGCAGGAGCGTCACTACCATCAT
CATCATCGTTATGTTCTCGTATTAATTGATACTAGTATCCTATAGGGCGA
ACAAACAAAACGAACACGTTAAAAAAAAAGAAAAAAAGGACGATTCAAAA
TGGCAACTTTTGCTTTTGCTGTTTGCATGCATGCAGGCACCCCTTCATCT
ATCCATTCATCCATCCATGTATATATATATATATGTGTGTGTTTATACAG
GCTCAATGGGAGACTCAGACGAAGAGGTGGAGCTCCAGCGGCGCGCCCTC
GCCCTCACTGCCATGGCAGGGGCCGGCGTAACCCCCTCCGGGTCCGCCGG
CGAAGCCTGGGGAACAGTCCCCACGTGGGCCCGCGTGGCCCGTCTCCAAG
CCCTCCAATCCCTCGCGCTCAAGGCCCCTAGGAACAAGGAGCTACGCGCT
GCCCTCTACAACATCAACATTGCGCAGGTCTTGCGGACGCTCTGCCTGGA
GCTGGACGTGACTACTCTCCTCTTGCAGAGCTTCGCCTTTCGAGCCGACC
CGGCGGCCACACCCCGCGCCCTGGCATGCGACGGCCGAACGGACATTCAG
TGGCTGGTGTCACAAAGGAGAAAAGCAGCGGCAGCAACGGGGAGGGGGGG
GGCAAGAGCAAGAGGAGCAGGAGAAGGCGGCTCGGTCACCGGGGCGGAAC
CGGCGACGGTCGGGGCTCGCGAGATTGCTGGAGGGCGGTGGCTGTCCACT
CTCCAGAGCGGGTTCACGCCGCCATTGAAGGGAGTTCTTGTCGGTGTGGT
GCTGCCCACGGTAGCGCCGTTGTTTCGGGCTCGCGCTAATCGTGGTGGCG
GTGGCGGTGACGAGCGAGGGAGAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig8012:4778..6403-

>mRNA_H-paniculata_contig8012.16040.1 ID=mRNA_H-paniculata_contig8012.16040.1|Name=mRNA_H-paniculata_contig8012.16040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig8012:4778..6403- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGACTCAGACGAAGAGGTGGAGCTCCAGCGGCGCGCCCTCGCCCT
CACTGCCATGGCAGGGGCCGGCGTAACCCCCTCCGGGTCCGCCGGCGAAG
CCTGGGGAACAGTCCCCACGTGGGCCCGCGTGGCCCGTCTCCAAGCCCTC
CAATCCCTCGCGCTCAAGGCCCCTAGGAACAAGGAGCTACGCGCTGCCCT
CTACAACATCAACATTGCGCAGGTCTTGCGGACGCTCTGCCTGGAGCTGG
ACGTGACTACTCTCCTCTTGCAGAGCTTCGCCTTTCGAGCCGACCCGGCG
GCCACACCCCGCGCCCTGGCATGCGACGGCCGAACGGACATTCAGTGGCT
GGTGTCACAAAGGAGAAAAGCAGCGGCAGCAACGGGGAGGGGGGGGGCAA
GAGCAAGAGGAGCAGGAGAAGGCGGCTCGGTCACCGGGGCGGAACCGGCG
ACGGTCGGGGCTCGCGAGATTGCTGGAGGGCGGTGGCTGTCCACTCTCCA
GAGCGGGTTCACGCCGCCATTGAAGGGAGTTCTTGTCGGTGTGGTGCTGC
CCACGGTAGCGCCGTTGTTTCGGGCTCGCGCTAATCGTGGTGGCGGTGGC
GGTGACGAGCGAGGGAGAGTGATGGGAGACTCAGACGAAGAGGTGGAGCT
CCAGCGGCGCGCCCTCGCCCTCACTGCCATGGCAGGGGCCGGCGTAACCC
CCTCCGGGTCCGCCGGCGAAGCCTGGGGAACAGTCCCCACGTGGGCCCGC
GTGGCCCGTCTCCAAGCCCTCCAATCCCTCGCGCTCAAGGCCCCTAGGAA
CAAGGAGCTACGCGCTGCCCTCTACAACATCAACATTGCGCAGGTCTTGC
GGACGCTCTGCCTGGAGCTGGACGTGACTACTCTCCTCTTGCAGAGCTTC
GCCTTTCGAGCCGACCCGGCGGCCACACCCCGCGCCCTGGCATGCGACGG
CCGAACGGACATTCAGTGGCTGGTGTCACAAAGGAGAAAAGCAGCGGCAG
CAACGGGGAGGGGGGGGGCAAGAGCAAGAGGAGCAGGAGAAGGCGGCTCG
GTCACCGGGGCGGAACCGGCGACGGTCGGGGCTCGCGAGATTGCTGGAGG
GCGGTGGCTGTCCACTCTCCAGAGCGGGTTCACGCCGCCATTGAAGGGAG
TTCTTGTCGGTGTGGTGCTGCCCACGGTAGCGCCGTTGTTTCGGGCTCGC
GCTAATCGTGGTGGCGGTGGCGGTGACGAGCGAGGGAGAGTG
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