mRNA_H-paniculata_contig8007.16033.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8007.16033.1
Unique NamemRNA_H-paniculata_contig8007.16033.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8007.16033.1 vs. uniprot
Match: A0A6H5KLY6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLY6_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.560e-46
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 QMDPVLVRFLEKFPNAAAAASASLADVTQLAGPLGLQEKRPVAIIRFSQEYLRMDWTKPQELYWVGKYAADAHKIFIEREWHAVEPNDHALNWWIDWMHGT 303
            QMDPVLVRFLEKFP A  AA+AS+ ++T++  PLGLQE+RP+AIIRFSQEYL   WT  +ELYWVGKYAADAHKIFIER+W  V+P+DHALNWW++WM G 
Sbjct:  269 QMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNWWVEWMRGA 369
[Close]
BLAST of mRNA_H-paniculata_contig8007.16033.1 vs. uniprot
Match: UPI0014559E8E (methyl-CpG-binding domain protein 4-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014559E8E)

HSP 1 Score: 98.6 bits (244), Expect = 3.310e-23
Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:   10 PVLVRFLEKFPNAAAAASASLADVTQLAGPLGLQEKRPVAIIRFSQEYLRMDWTKPQELYWVGKYAADAHKIFIEREWHAVEPNDHALNWWIDWM 294
            PVL +F E +PNA     A   D+ +L  PLGL  KR   I+RFS EYL  DWT P EL+ +GKY  D+++IF   EW  VEP DH LN + DW+
Sbjct:  135 PVLWKFFESWPNAEVTRKADWTDMVELLHPLGLHLKRAQMIVRFSDEYLSKDWTYPIELHGIGKYGNDSYRIFCVGEWKEVEPTDHMLNKYHDWL 229
[Close]
BLAST of mRNA_H-paniculata_contig8007.16033.1 vs. uniprot
Match: A0A835Z3C1_9STRA (DNA glycosylase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.580e-22
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 QMDPVLVRFLEKFPNAAAAASASLADVTQLAGPLGLQEKRPVAIIRFSQEYLRMDWTKPQELYWVGKYAADAHKIFIEREWHAVEPNDHALNWWIDW 291
            Q+DPVL +FL+  P   +AA A    +  +  PLGL +KRPVA++RFS+EYL   W   + L+WVG+Y  DA+ IF+ ++W  V P+D  L  ++DW
Sbjct:   34 QVDPVLAQFLDTHPTPESAAKADPTALAPMLKPLGLNKKRPVAVVRFSREYLA--WRSGRALHWVGQYGVDAYDIFVLQKWETVTPDDSVLRCYVDW 128
[Close]
BLAST of mRNA_H-paniculata_contig8007.16033.1 vs. uniprot
Match: A0A8D2KTC0_VARKO (Uncharacterized protein n=2 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2KTC0_VARKO)

HSP 1 Score: 89.0 bits (219), Expect = 8.780e-21
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:   10 PVLVRFLEKFPNAAAAASASLADVTQLAGPLGLQEKRPVAIIRFSQEYLRMDWTKPQELYWVGKYAADAHKIFIEREWHAVEPNDHALNWWIDWM 294
            PVL  FL+K+P+   A +A+  ++++L  PLGL E R   II+FS EYL   W  P EL+ +GKY  D+++IF   EW  V+P DH LN + +W+
Sbjct:    4 PVLWEFLKKYPSPTIARTANWKEMSELLKPLGLYELRARTIIKFSDEYLVKQWKYPIELHGIGKYGNDSYRIFCVNEWKEVQPQDHKLNVYHNWL 98
[Close]
BLAST of mRNA_H-paniculata_contig8007.16033.1 vs. uniprot
Match: UPI0008542810 (methyl-CpG-binding domain protein 4 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008542810)

HSP 1 Score: 95.5 bits (236), Expect = 1.020e-20
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:   10 PVLVRFLEKFPNAAAAASASLADVTQLAGPLGLQEKRPVAIIRFSQEYLRMDWTKPQELYWVGKYAADAHKIFIEREWHAVEPNDHALNWWIDWMHGTNPENVG 321
            PVL  FLEK+PNA  A  A   D+ ++  PLGL E R   I+RFS+EYL   W  P  L+ +GKY  D+++IF   EW  V+P DH LN + DW+   N + +G
Sbjct:  447 PVLWSFLEKYPNAEVARMADWKDMAEILQPLGLYELRAKTIVRFSEEYLTKKWRYPIALHGIGKYGNDSYRIFCVNEWKEVQPEDHKLNKYHDWLW-ENKDKLG 549
[Close]
BLAST of mRNA_H-paniculata_contig8007.16033.1 vs. uniprot
Match: UPI001AAC9C4F (methyl-CpG-binding domain protein 4 n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAC9C4F)

HSP 1 Score: 95.1 bits (235), Expect = 1.470e-20
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:   10 PVLVRFLEKFPNAAAAASASLADVTQLAGPLGLQEKRPVAIIRFSQEYLRMDWTKPQELYWVGKYAADAHKIFIEREWHAVEPNDHALNWWIDWMHGTNPENVG 321
            PVL  FLEK+P A  A +A   D+  +  PLGL E R   I+RFS+EYL   W  P EL+ +GKY  D+++IF   EW  V+P DH LN + DW+   N + +G
Sbjct:  517 PVLWSFLEKYPGAEVARAADWKDMADMLQPLGLYELRAKTIVRFSEEYLAKKWRYPIELHGIGKYGNDSYRIFCVNEWKEVQPEDHKLNNYHDWLW-ENKDRLG 619
[Close]
BLAST of mRNA_H-paniculata_contig8007.16033.1 vs. uniprot
Match: R7UZA9_CAPTE (Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UZA9_CAPTE)

HSP 1 Score: 87.4 bits (215), Expect = 9.190e-20
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:   10 PVLVRFLEKFPNAAAAASASLADVTQLAGPLGLQEKRPVAIIRFSQEYLRMDWTKPQELYWVGKYAADAHKIFIEREWHAVEPNDHALNWWIDWM 294
            PVL  F + +P+A A  +A+  ++++L  PLGL   R   +IRFS+EYL ++WT P EL+ +GKY  D+++IF   EW  V P+DH LN +  W+
Sbjct:   41 PVLWTFFDLWPSAEATKTANWEEISELLQPLGLHVSRAHTLIRFSEEYLNVNWTYPIELHGIGKYGNDSYRIFCLGEWKQVAPSDHKLNDYHRWL 135
[Close]
BLAST of mRNA_H-paniculata_contig8007.16033.1 vs. uniprot
Match: UPI001FB15C74 (methyl-CpG-binding domain protein 4-like protein n=1 Tax=Capsicum annuum TaxID=4072 RepID=UPI001FB15C74)

HSP 1 Score: 87.8 bits (216), Expect = 1.150e-19
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 QMDPVLVRFLEKFPNAAAAASASLADVTQLAGPLGLQEKRPVAIIRFSQEYLRMDWTKPQELYWVGKYAADAHKIFIEREWHAVEPNDHALNWWIDWMHG 300
            Q+  V+  F    PNA  A   +L D+ +L  PLGL  KR + I R SQEYL   WT   +L+ +GKYAADA+ IF   +W  V+P+DH LN + D++HG
Sbjct:   62 QVRRVIEDFFTICPNAVVATEVALEDIEKLIRPLGLYMKRSLYIPRLSQEYLGKSWTHVTQLHGIGKYAADAYAIFCIGKWDQVQPSDHILNKYWDFLHG 161
[Close]
BLAST of mRNA_H-paniculata_contig8007.16033.1 vs. uniprot
Match: UPI0009A268CF (methyl-CpG-binding domain protein 4 isoform X1 n=2 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A268CF)

HSP 1 Score: 92.4 bits (228), Expect = 1.180e-19
Identity = 46/104 (44.23%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:   10 PVLVRFLEKFPNAAAAASASLADVTQLAGPLGLQEKRPVAIIRFSQEYLRMDWTKPQELYWVGKYAADAHKIFIEREWHAVEPNDHALNWWIDWMHGTNPENVG 321
            PVL  FLE++P+A  A  A   ++  L  PLGL E R  AII+FS E+L   W  P EL+ +GKY  D+++IF  +EW  V+P DH LN + +W+   N E +G
Sbjct:  412 PVLWDFLERYPSAEVARVADWKEIAALLKPLGLYELRAKAIIKFSDEFLTKQWKYPIELHGIGKYGNDSYRIFCVKEWKEVQPRDHKLNKYWEWLW-ANQETLG 514
[Close]
BLAST of mRNA_H-paniculata_contig8007.16033.1 vs. uniprot
Match: Q4RJU6_TETNG ((spotted green pufferfish) hypothetical protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4RJU6_TETNG)

HSP 1 Score: 90.1 bits (222), Expect = 1.680e-19
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:   10 PVLVRFLEKFPNAAAAASASLADVTQLAGPLGLQEKRPVAIIRFSQEYLRMDWTKPQELYWVGKYAADAHKIFIEREWHAVEPNDHALNWWIDWM 294
            PVL +F E++P+A A   A    +++L  PLGL E R  A+IRFS+EYL   W  P EL+ +GKY  D+++IF   EW  V P DH LN +  W+
Sbjct:  191 PVLWQFFERYPSAEATRGAEWKPMSELMKPLGLNELRAKALIRFSEEYLTKQWRYPIELHGIGKYGNDSYRIFCLEEWREVTPEDHMLNKYHAWL 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8007.16033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLY6_9PHAE2.560e-4671.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0014559E8E3.310e-2349.47methyl-CpG-binding domain protein 4-like n=1 Tax=A... [more]
A0A835Z3C1_9STRA1.580e-2244.33DNA glycosylase (Fragment) n=1 Tax=Tribonema minus... [more]
A0A8D2KTC0_VARKO8.780e-2144.21Uncharacterized protein n=2 Tax=Varanus komodoensi... [more]
UPI00085428101.020e-2045.19methyl-CpG-binding domain protein 4 n=1 Tax=Nanora... [more]
UPI001AAC9C4F1.470e-2045.19methyl-CpG-binding domain protein 4 n=1 Tax=Rana t... [more]
R7UZA9_CAPTE9.190e-2043.16Uncharacterized protein (Fragment) n=1 Tax=Capitel... [more]
UPI001FB15C741.150e-1945.00methyl-CpG-binding domain protein 4-like protein n... [more]
UPI0009A268CF1.180e-1944.23methyl-CpG-binding domain protein 4 isoform X1 n=2... [more]
Q4RJU6_TETNG1.680e-1945.26(spotted green pufferfish) hypothetical protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8007contigH-paniculata_contig8007:5601..6571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue2.1e-38
Seed eggNOG ortholog2880.D7FKJ0
Preferred nameMBD4
KEGG koko:K10801
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000700,GO:0000785,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006304,GO:0006305,GO:0006306,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007095,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008263,GO:0008630,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009314,GO:0009394,GO:0009628,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0012501,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022402,GO:0023052,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032259,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035556,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043565,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044773,GO:0044774,GO:0044818,GO:0045008,GO:0045786,GO:0045930,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0055086,GO:0065007,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0090304,GO:0090305,GO:0097159,GO:0097190,GO:0097193,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047,GO:1990837
EggNOG free text desc.domain protein
EggNOG OGsKOG4161@1,KOG4161@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03400
Exons2
Model size324
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8007.16033.1prot_H-paniculata_contig8007.16033.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8007 5604..6571 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.4926486-UTR-H-paniculata_contig8007:5600..56031622931001.4926486-UTR-H-paniculata_contig8007:5600..5603Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8007 5601..5603 +
1691481545.6913369-UTR-H-paniculata_contig8007:5600..56031691481545.6913369-UTR-H-paniculata_contig8007:5600..5603Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8007 5601..5603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.5099244-CDS-H-paniculata_contig8007:5603..57451622931001.5099244-CDS-H-paniculata_contig8007:5603..5745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8007 5604..5745 +
1691481545.7044504-CDS-H-paniculata_contig8007:5603..57451691481545.7044504-CDS-H-paniculata_contig8007:5603..5745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8007 5604..5745 +
1622931001.5569642-CDS-H-paniculata_contig8007:6392..65711622931001.5569642-CDS-H-paniculata_contig8007:6392..6571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8007 6393..6571 +
1691481545.7151456-CDS-H-paniculata_contig8007:6392..65711691481545.7151456-CDS-H-paniculata_contig8007:6392..6571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8007 6393..6571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8007.16033.1

>prot_H-paniculata_contig8007.16033.1 ID=prot_H-paniculata_contig8007.16033.1|Name=mRNA_H-paniculata_contig8007.16033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MDPVLVRFLEKFPNAAAAASASLADVTQLAGPLGLQEKRPVAIIRFSQEY
LRMDWTKPQELYWVGKYAADAHKIFIEREWHAVEPNDHALNWWIDWMHGT
NPENVG*
back to top

mRNA from alignment at H-paniculata_contig8007:5601..6571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8007.16033.1 ID=mRNA_H-paniculata_contig8007.16033.1|Name=mRNA_H-paniculata_contig8007.16033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=971bp|location=Sequence derived from alignment at H-paniculata_contig8007:5601..6571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATGGATCCCGTGCTTGTGCGCTTCTTGGAAAAGTTCCCAAATGCGGC
TGCAGCTGCTTCGGCTAGCTTGGCCGACGTGACTCAGTTGGCGGGCCCGC
TGGGGCTTCAGGAGAAGAGACCTGTTGCCATCATACGATTTTCACGTGAG
ATGAAAAGTGAAGACAGTTTAACAGGGTCGAGTATGTGCTATCCAAGAGA
GCTGTATCATTTCATCTCGCTTGAAACGTGCTGTAACGCTTGGCATGGCT
TGCATTCGTGGAGTCTTAGCGGAGCGCTTGCTTTATTGAGAGACTGTCAA
GTCGCAAACAAATGGATTGCTTGGATGCATGAAGACGTGCTTTAGTTCTC
TCCATGCCTGTCTTGCATTTTCTTTCCCATTCTGTGTTTTTTCATATAGC
GAACGAGCAAACGATCTATTCCGAGCCATCGTGGAATATAGTCAACACTC
GGCGCTCTGCGTTCGCACTCACATCGCTACTGGATACGAAGTACAATGTA
TCCGAAGAACTGGTACAACGGACAGGTTGCTTCGTGCCTGCTTATCGCGT
GGTCGGTGTAGATCAACCCCCTTGTCAAACCATCAAATACAAAAACAACG
AAGATGAGGTTGGAGATACAAAGACGTCAGCACAACGATGACAGCTAGCA
ATCGCCTAACCCAAACTGTGACTGTCCGAGTACGAGTGGCGTGGCAGACC
CAAAGAACAACCAACCACTGTAGACCCGAAAATAGCTCGTCACATTTTTT
GCCTTTTTTCTACGCTGTTCTTGTTTGCCCTGTCGCCGTCAGAGGAATAC
CTGCGTATGGATTGGACGAAGCCTCAAGAACTCTATTGGGTTGGAAAGTA
TGCTGCTGATGCCCACAAGATATTTATCGAGCGGGAGTGGCACGCGGTTG
AGCCGAACGACCATGCTCTCAATTGGTGGATCGATTGGATGCACGGCACA
AATCCTGAGAACGTCGGTTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8007:5601..6571+

>mRNA_H-paniculata_contig8007.16033.1 ID=mRNA_H-paniculata_contig8007.16033.1|Name=mRNA_H-paniculata_contig8007.16033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig8007:5601..6571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCCCGTGCTTGTGCGCTTCTTGGAAAAGTTCCCAAATGCGGCTGC
AGCTGCTTCGGCTAGCTTGGCCGACGTGACTCAGTTGGCGGGCCCGCTGG
GGCTTCAGGAGAAGAGACCTGTTGCCATCATACGATTTTCACATGGATCC
CGTGCTTGTGCGCTTCTTGGAAAAGTTCCCAAATGCGGCTGCAGCTGCTT
CGGCTAGCTTGGCCGACGTGACTCAGTTGGCGGGCCCGCTGGGGCTTCAG
GAGAAGAGACCTGTTGCCATCATACGATTTTCACAGGAATACCTGCGTAT
GGATTGGACGAAGCCTCAAGAACTCTATTGGGTTGGAAAGTATGCTGCTG
ATGCCCACAAGATATTTATCGAGCGGGAGTGGCACGCGGTTGAGCCGAAC
GACCATGCTCTCAATTGGTGGATCGATTGGATGCACGGCACAAATCCTGA
GAACGTCGGTTGAAGGAATACCTGCGTATGGATTGGACGAAGCCTCAAGA
ACTCTATTGGGTTGGAAAGTATGCTGCTGATGCCCACAAGATATTTATCG
AGCGGGAGTGGCACGCGGTTGAGCCGAACGACCATGCTCTCAATTGGTGG
ATCGATTGGATGCACGGCACAAATCCTGAGAACGTCGGTTGA
back to top