mRNA_H-paniculata_contig8002.16031.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8002.16031.1
Unique NamemRNA_H-paniculata_contig8002.16031.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8002.16031.1 vs. uniprot
Match: D7G139_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G139_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.230e-11
Identity = 52/130 (40.00%), Postives = 58/130 (44.62%), Query Frame = 1 
Query:  154 GRAPISCKFGVQCHRQDCWYSHPEGRLIDAGGGVAGGGAXXXXXXXXXXXXXXGSRGATPLRSMAGAQASPRMGGXXXXGR-----------------------------TECRYGFDCTRRDCHFHHPY 456
            GR P+ C+FGV CHR+DCWY+HP GR IDAGG        XXXXXXX      GS GA+                XXXX                                ECRYGF C R DCHF HP+
Sbjct:    3 GRGPMPCRFGVDCHRKDCWYAHPAGRSIDAGGXXX-----XXXXXXXYGAMPNGSNGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNECRYGFQCKREDCHFSHPF 127
[Close]
BLAST of mRNA_H-paniculata_contig8002.16031.1 vs. uniprot
Match: A0A836CHD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHD1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.470e-7
Identity = 30/94 (31.91%), Postives = 41/94 (43.62%), Query Frame = 1 
Query:  172 CKFGVQCHRQDCWYSHPEGRLIDAGGGVAGGGAXXXXXXXXXXXXXXGSRGATPLRSMAGAQASPRMGGXXXXGRTECRYGFDCTRRDCHFHHP 453
            C+F   C RQDC+++HP GR+ID   G +GG                G+ G     +  G    P            CR+ +DC R DC+F HP
Sbjct:    7 CRFDTACSRQDCYFAHPNGRMID---GSSGGNGMVMVMPMHAGGGGMGAPGGMANGTGGGGSQKP------------CRFAWDCRRPDCYFAHP 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8002.16031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G139_ECTSI1.230e-1140.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHD1_9STRA2.470e-731.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8002contigH-paniculata_contig8002:6953..7410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size460
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.2706993-CDS-H-paniculata_contig8002:6952..74081622931001.2706993-CDS-H-paniculata_contig8002:6952..7408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8002 6953..7408 +
1691481545.6263134-CDS-H-paniculata_contig8002:6952..74081691481545.6263134-CDS-H-paniculata_contig8002:6952..7408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8002 6953..7408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8002.16031.1prot_H-paniculata_contig8002.16031.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8002 6953..7408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8002.16031.1

>prot_H-paniculata_contig8002.16031.1 ID=prot_H-paniculata_contig8002.16031.1|Name=mRNA_H-paniculata_contig8002.16031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
NTFAKRQTRTSGVHPISLSLSPSIGNLKDLIEVRQRPQNPLLLTNMMGSG
GGRAPISCKFGVQCHRQDCWYSHPEGRLIDAGGGVAGGGAGNGHAGGRGG
GGGLGSRGATPLRSMAGAQASPRMGGGGGGGRTECRYGFDCTRRDCHFHH
PY
back to top

mRNA from alignment at H-paniculata_contig8002:6953..7410+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8002.16031.1 ID=mRNA_H-paniculata_contig8002.16031.1|Name=mRNA_H-paniculata_contig8002.16031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig8002:6953..7410+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACACATTTGCAAAGAGACAAACAAGGACCTCAGGAGTGCACCCCATCTC
TCTCTCTCTCTCTCCCTCCATAGGCAACTTGAAAGATCTTATCGAAGTAC
GACAGCGCCCCCAAAACCCACTGCTCCTTACAAACATGATGGGTTCCGGT
GGAGGACGCGCCCCGATCTCGTGCAAGTTCGGAGTTCAGTGCCATAGGCA
GGACTGTTGGTACTCACACCCTGAGGGGAGATTGATCGACGCTGGTGGCG
GGGTCGCCGGAGGCGGCGCTGGGAACGGCCATGCGGGCGGAAGGGGCGGC
GGTGGGGGTCTTGGTTCTCGAGGCGCAACGCCGCTGCGGTCGATGGCCGG
GGCGCAAGCTTCGCCTAGAATGGGAGGTGGAGGCGGCGGTGGCAGGACGG
AGTGTCGATACGGCTTTGATTGTACTAGACGGGACTGCCACTTCCATCAC
CCCTATGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8002:6953..7410+

>mRNA_H-paniculata_contig8002.16031.1 ID=mRNA_H-paniculata_contig8002.16031.1|Name=mRNA_H-paniculata_contig8002.16031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig8002:6953..7410+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACACATTTGCAAAGAGACAAACAAGGACCTCAGGAGTGCACCCCATCTC
TCTCTCTCTCTCTCCCTCCATAGGCAACTTGAAAGATCTTATCGAAGTAC
GACAGCGCCCCCAAAACCCACTGCTCCTTACAAACATGATGGGTTCCGGT
GGAGGACGCGCCCCGATCTCGTGCAAGTTCGGAGTTCAGTGCCATAGGCA
GGACTGTTGGTACTCACACCCTGAGGGGAGATTGATCGACGCTGGTGGCG
GGGTCGCCGGAGGCGGCGCTGGGAACGGCCATGCGGGCGGAAGGGGCGGC
GGTGGGGGTCTTGGTTCTCGAGGCGCAACGCCGCTGCGGTCGATGGCCGG
GGCGCAAGCTTCGCCTAGAATGGGAGGTGGAGGCGGCGGTGGCAGGACGG
AGTGTCGATACGGCTTTGATTGTACTAGACGGGACTGCCACTTCCATCAC
CCCTATAACACATTTGCAAAGAGACAAACAAGGACCTCAGGAGTGCACCC
CATCTCTCTCTCTCTCTCTCCCTCCATAGGCAACTTGAAAGATCTTATCG
AAGTACGACAGCGCCCCCAAAACCCACTGCTCCTTACAAACATGATGGGT
TCCGGTGGAGGACGCGCCCCGATCTCGTGCAAGTTCGGAGTTCAGTGCCA
TAGGCAGGACTGTTGGTACTCACACCCTGAGGGGAGATTGATCGACGCTG
GTGGCGGGGTCGCCGGAGGCGGCGCTGGGAACGGCCATGCGGGCGGAAGG
GGCGGCGGTGGGGGTCTTGGTTCTCGAGGCGCAACGCCGCTGCGGTCGAT
GGCCGGGGCGCAAGCTTCGCCTAGAATGGGAGGTGGAGGCGGCGGTGGCA
GGACGGAGTGTCGATACGGCTTTGATTGTACTAGACGGGACTGCCACTTC
CATCACCCCTAT
back to top