mRNA_H-paniculata_contig8000.16028.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8000.16028.1
Unique NamemRNA_H-paniculata_contig8000.16028.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8000.16028.1 vs. uniprot
Match: A0A6H5L5K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K1_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 1.110e-61
Identity = 124/201 (61.69%), Postives = 139/201 (69.15%), Query Frame = 1 
Query:    1 MQPPAKHEELLRTIYSTLRRREPNGCDEKELVGRVFHSS--AVVDKTGSAGPAGLGPACDPGGSGVGSTSGPGPGALSDVSDNHPFSKTKVRGAVTLLKFAQAVRVGRGESAGQHVLYVAHELPTFSDFVTRHNRHLVEMA--------------------RELGVDMTSQDWKSLLETDRSRGGV--RALPSPSPTNQSE 531
            MQPPAKH ELLRTIYSTLRRREPNGCDEKELV RVFH+S  A  ++ G  G    G        GV    G G G   D  ++H FSKTKVRGAVTLLKFAQAVRVGRG++AGQHVLYVA+ELPTFSDF+ RHN HLV+MA                    RELGVDMT+ DWKSLLET++S GG   R +PS SPT+QSE
Sbjct:  260 MQPPAKHNELLRTIYSTLRRREPNGCDEKELVSRVFHASMSASAERRGRGGDVNAGTPA-----GVSVAGGGGEGTTGDAPESHRFSKTKVRGAVTLLKFAQAVRVGRGDTAGQHVLYVAYELPTFSDFMARHNSHLVDMAQGLAFTLSTRAHALGRDVSARELGVDMTAMDWKSLLETEQSSGGGGGRPIPSTSPTDQSE 455
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BLAST of mRNA_H-paniculata_contig8000.16028.1 vs. uniprot
Match: D8LE12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE12_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 1.860e-61
Identity = 114/165 (69.09%), Postives = 127/165 (76.97%), Query Frame = 1 
Query:    1 MQPPAKHEELLRTIYSTLRRREPNGCDEKELVGRVFHSS--AVVDKTGSAGPAGLGPACDPGGSGVGSTSGPGPGALSDVSDNHPFSKTKVRGAVTLLKFAQAVRVGRGESAGQHVLYVAHELPTFSDFVTRHNRHLVEMARELGVDMTSQDWKSLLETDRSRGG 489
            MQPPAKH ELLRTIY TLRRREPNGCDEKELVGRVFHSS  A V++ G  G A  G        GV            D  ++H FSKTKVRGAVTLLKFAQAVRVGRG++AGQHVLYVA+ELPTFSDF+ RHN HLV+MARELGVDMT+ DWKSLLET+++ GG
Sbjct:    1 MQPPAKHNELLRTIYGTLRRREPNGCDEKELVGRVFHSSMSASVERRGGGGDANAGTPA-----GVSVAXXXXXXNTGDAPESHRFSKTKVRGAVTLLKFAQAVRVGRGDTAGQHVLYVAYELPTFSDFMARHNSHLVDMARELGVDMTAMDWKSLLETEQNSGG 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8000.16028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5K1_9PHAE1.110e-6161.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE12_ECTSI1.860e-6169.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8000contigH-paniculata_contig8000:462..2228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size531
Cds size531
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8000.16028.1prot_H-paniculata_contig8000.16028.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8000 462..2228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931000.9223316-CDS-H-paniculata_contig8000:461..5771622931000.9223316-CDS-H-paniculata_contig8000:461..577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8000 462..577 -
1691481545.4841673-CDS-H-paniculata_contig8000:461..5771691481545.4841673-CDS-H-paniculata_contig8000:461..577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8000 462..577 -
1622931000.9434743-CDS-H-paniculata_contig8000:1321..14361622931000.9434743-CDS-H-paniculata_contig8000:1321..1436Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8000 1322..1436 -
1691481545.4945922-CDS-H-paniculata_contig8000:1321..14361691481545.4945922-CDS-H-paniculata_contig8000:1321..1436Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8000 1322..1436 -
1622931000.962727-CDS-H-paniculata_contig8000:1745..20101622931000.962727-CDS-H-paniculata_contig8000:1745..2010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8000 1746..2010 -
1691481545.5044508-CDS-H-paniculata_contig8000:1745..20101691481545.5044508-CDS-H-paniculata_contig8000:1745..2010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8000 1746..2010 -
1622931000.9799788-CDS-H-paniculata_contig8000:2193..22281622931000.9799788-CDS-H-paniculata_contig8000:2193..2228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8000 2194..2228 -
1691481545.5145843-CDS-H-paniculata_contig8000:2193..22281691481545.5145843-CDS-H-paniculata_contig8000:2193..2228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8000 2194..2228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8000.16028.1

>prot_H-paniculata_contig8000.16028.1 ID=prot_H-paniculata_contig8000.16028.1|Name=mRNA_H-paniculata_contig8000.16028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MQPPAKHEELLRTIYSTLRRREPNGCDEKELVGRVFHSSAVVDKTGSAGP
AGLGPACDPGGSGVGSTSGPGPGALSDVSDNHPFSKTKVRGAVTLLKFAQ
AVRVGRGESAGQHVLYVAHELPTFSDFVTRHNRHLVEMARELGVDMTSQD
WKSLLETDRSRGGVRALPSPSPTNQSE
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mRNA from alignment at H-paniculata_contig8000:462..2228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8000.16028.1 ID=mRNA_H-paniculata_contig8000.16028.1|Name=mRNA_H-paniculata_contig8000.16028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1767bp|location=Sequence derived from alignment at H-paniculata_contig8000:462..2228- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACCGCCTGCCAAGCACGAGGAACTCCTGCGGTGAGATTTACTGTT
AGAGACAAACGTAGAGATGCTGTTGGTAAGAAATAATTAATGATAACCAT
TCCCGATCCAACAGGCAGTGCTAACTTCATACACTGCCATTTTCGCAGCC
TTGATTTATTTTCACTTCGTCCCTCTCTCTCTCCCTCTCCCTCTCCCTCT
CTCTCGACACCCACACAGCACGATCTACAGCACGCTTCGCCGGCGTGAAC
CAAATGGGTGCGACGAGAAAGAACTGGTCGGAAGGGTCTTCCACTCCTCG
GCTGTGGTGGATAAAACCGGGAGCGCCGGCCCTGCTGGTCTCGGACCCGC
TTGCGACCCGGGCGGGTCTGGGGTTGGGTCCACGTCGGGACCGGGACCGG
GCGCTCTATCGGATGTATCGGATAATCACCCGTTCTCGAAGACCAAGGTT
CGCGGGGCTGTTACTCTGCTCAAGTTCGCGCAGGTAACCAAATAGAACCG
TAGATTACGATGTATAACTCCTCCCCCCCCCCCTGGGTGATAACATTTTG
GACGTCTGCCCGGGGGTTAGTATTAGGGCGTCTGTCGTATACTCCGTATC
ATTTATATGAAGAAAGACGTCACATACAATATAAACACTCTGCGTAATTT
GTTGTTCCTAGGTAGTGGTATACGCCGGCACCCTGTGCGAAACGATAAGC
ACTTGGGGTGTATTTTGTAGCTTTTCAGACTTCGTCTCTTGACTCGTTCG
CGTGTGCCTCTACCTGGTTTGGTATTACTGGGTTATCGACAGGCGGTGCG
GGTTGGGCGAGGGGAGAGCGCCGGGCAACACGTCCTTTACGTTGCCCACG
AGCTTCCCACGTTCAGTGATTTTGTTACGCGGCACAATCGTCACCTGGTG
GAGATGGGTGAGAAGGAGAGATGAGGGAGGGGGGGGGGGGGGGGGGGGGG
GGGTTTAGGGAGCATGCTAGTGGTGGGTGGTTGGTCGTGTGCTCCTCCGT
GTATTTTTTTGTTTGTTGTATATTCCCTGATGATTATTTCAGTATTGTAA
GGTGTAAGGTGATGGCGTTTGTCGTAGATTCGGAATATTTGTTTTAGTCT
GTACTCAAGTAAATCCTGAAAATTGAATCTTCATGCGAGCGCAGCAAGTC
CGCGGGTCGGGGACAAACACTAACTACGCGGGCGTAGCCGTAGCTCTATT
AAATCTAGTATTATCACATATTATCACTGACTGTTGTTATTAGTGGTATG
ATAAGCTATCTTTAAAAAAAATAGTGTCATCGACTCTTTCGTGCCAACGG
ACGTGTATTTGGTCAGGTGGCAAACCTTTATTGGATTGCCGTTTGTAGTT
GATTCTCGATGTTTACGAACCAACGTGTCCGAGATTGCCACGTTCTCGGA
GGTCAAATATGGTTGTATACTGCTGTTTATCCATTGTTTAAGTGTTTTAA
AAAACATGTGTTGATGAAGTATTTGTTTGATAGTGATCCGTGGATTATGA
ATTGCTCAAGGGGTTGACTGGTGAACTATCTGACTGATTGACCGATGGGT
TCATTGATGAACCAAGACAATTAATTGATGAATCAAGTCAGTCAAGACAC
CATTTGGTCATAAATCATGTGTGTTGTTGTGTGTTTGGTTTGCGTCGGCA
GCACGAGAGCTTGGAGTGGACATGACATCACAAGACTGGAAGAGCCTCCT
GGAAACAGACCGCTCAAGAGGGGGAGTACGCGCTCTCCCATCCCCTAGCC
CTACCAACCAATCCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8000:462..2228-

>mRNA_H-paniculata_contig8000.16028.1 ID=mRNA_H-paniculata_contig8000.16028.1|Name=mRNA_H-paniculata_contig8000.16028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig8000:462..2228- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACCGCCTGCCAAGCACGAGGAACTCCTGCGATGCAACCGCCTGCC
AAGCACGAGGAACTCCTGCGCACGATCTACAGCACGCTTCGCCGGCGTGA
ACCAAATGGGTGCGACGAGAAAGAACTGGTCGGAAGGGTCTTCCACTCCT
CGGCTGTGGTGGATAAAACCGGGAGCGCCGGCCCTGCTGGTCTCGGACCC
GCTTGCGACCCGGGCGGGTCTGGGGTTGGGTCCACGTCGGGACCGGGACC
GGGCGCTCTATCGGATGTATCGGATAATCACCCGTTCTCGAAGACCAAGG
TTCGCGGGGCTGTTACTCTGCTCAAGTTCGCGCAGCACGATCTACAGCAC
GCTTCGCCGGCGTGAACCAAATGGGTGCGACGAGAAAGAACTGGTCGGAA
GGGTCTTCCACTCCTCGGCTGTGGTGGATAAAACCGGGAGCGCCGGCCCT
GCTGGTCTCGGACCCGCTTGCGACCCGGGCGGGTCTGGGGTTGGGTCCAC
GTCGGGACCGGGACCGGGCGCTCTATCGGATGTATCGGATAATCACCCGT
TCTCGAAGACCAAGGTTCGCGGGGCTGTTACTCTGCTCAAGTTCGCGCAG
GCGGTGCGGGTTGGGCGAGGGGAGAGCGCCGGGCAACACGTCCTTTACGT
TGCCCACGAGCTTCCCACGTTCAGTGATTTTGTTACGCGGCACAATCGTC
ACCTGGTGGAGATGGGCGGTGCGGGTTGGGCGAGGGGAGAGCGCCGGGCA
ACACGTCCTTTACGTTGCCCACGAGCTTCCCACGTTCAGTGATTTTGTTA
CGCGGCACAATCGTCACCTGGTGGAGATGGCACGAGAGCTTGGAGTGGAC
ATGACATCACAAGACTGGAAGAGCCTCCTGGAAACAGACCGCTCAAGAGG
GGGAGTACGCGCTCTCCCATCCCCTAGCCCTACCAACCAATCCGAGCACG
AGAGCTTGGAGTGGACATGACATCACAAGACTGGAAGAGCCTCCTGGAAA
CAGACCGCTCAAGAGGGGGAGTACGCGCTCTCCCATCCCCTAGCCCTACC
AACCAATCCGAG
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