|
|
Homology
BLAST of mRNA_H-paniculata_contig8.16017.1 vs. uniprot
Match: D7FZK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK8_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 1.060e-16 Identity = 45/80 (56.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 1852 EDSGRVDTE--VGGDCKELARVRGLCRLRGTILALVEWNVMDSTGVAFSEVSFMLATSLKRDWPQQYIAYLEAKLIFETE 2085
+D GR + GG KEL RVRGLCR++G++LALVEW+V+D G A +E+SF+L+++LK +WP+QYI YLEAK++FE E
Sbjct: 569 QDDGRPEDNGPKGGPQKELLRVRGLCRMQGSVLALVEWSVVDVDGAASTELSFVLSSTLKAEWPRQYIDYLEAKMVFEEE 648
BLAST of mRNA_H-paniculata_contig8.16017.1 vs. uniprot
Match: A0A6H5KZ06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ06_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 3.950e-15 Identity = 39/69 (56.52%), Postives = 58/69 (84.06%), Query Frame = 1
Query: 1882 GGDCKELARVRGLCRLRGTILALVEWNVMDSTGVAFSEVSFMLATSLKRDWPQQYIAYLEAKLIFETED 2088
G K+L RVRGLCR++G++LALVEW+++D G A +E+SF+L+++LK +WP+QYI YLEAK++FE E+
Sbjct: 586 GAPQKKLLRVRGLCRMQGSVLALVEWSMVDVDGAASTELSFVLSSTLKAEWPRQYIDYLEAKMVFEEEE 654
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 2873 |
| Cds size | 1545 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8.16017.1 >prot_H-paniculata_contig8.16017.1 ID=prot_H-paniculata_contig8.16017.1|Name=mRNA_H-paniculata_contig8.16017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=515bp
MSVGAVRGPPTLPLRPIPACIKPTGIASSADRSRRVTFVGIGLARPAEEN LSSTVPTLRAKGPIDLQQVTGVAGIRTPTLPPGRGGSNDLGHTFISTGDG KSSNNNDREPQRRRLGHDMPETSQEGTHRPKRSSVSGRQLQRESVVTAAE GLGRRVEAERRDIRLGQTQKNDEVVCGDSGMPGRVIDVSVPARGDERWDE GERIGIGQSQHRCEQMGRGSVDESQEARLLHANNVNAQWLCQDDDLRHQG GLWMTQEEQDPHEDRDSWKTHADGGNEQGPTPSKYSMTTAPAPPPEPTGR TAQSPREGHWIQKSENHSGVSNPWATHPRVRNGPFITQSDRSMIPTAPPD SRAWATHDPTTRRRDRGAAVDVKPCRQDDVPPEGDLRERQDGSARNGGQM WDCEPVGEDSGRVDTEVGGDCKELARVRGLCRLRGTILALVEWNVMDSTG VAFSEVSFMLATSLKRDWPQQYIAYLEAKLIFETEDCPYPEASGRGDVAA AGSGAEMVVWNADD* back to topmRNA from alignment at H-paniculata_contig8:12113..17388- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8.16017.1 ID=mRNA_H-paniculata_contig8.16017.1|Name=mRNA_H-paniculata_contig8.16017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5276bp|location=Sequence derived from alignment at H-paniculata_contig8:12113..17388- (Halopteris paniculata Hal_grac_a_UBK monoicous) CAGTTGGGCCTGCAAAGAGCATTCTCCAGCAATTACCTCAGGCGAGGAAA
ATTTATCTCTTCGTAAGCTCCTTGCTGTGGCTGTTTCTTGATTGGGTCGT
GGAAGAGTGTCCGCTCTGACTTCTACTCCAAGGGTGCATTGTTCTTCAGA
CAGTATTCGTCTGGGCTGTACACCAGTGATGGACAGAAAGTAAGCAGCCG
TTGGTCAACTCCTCCCCTGTATTCTTACGGTTCCCAGCTTAGAGCTTGTA
CTTCTAGTATGTTTGTTGGGAACTTTCGGCTAGAGGTGTCGCACTCATTC
CGTGCAGGTTATATCAGTCTCGCCGACCGAAAGCTCACAGTTGTTCATGA
CCATTTAGGCACCTGTTAAATATTTTTCGCGTCGTGTGTTCAGTCTCAGA
GGAAACATCCTTGACTTTTGGACTGGTGTCCTGTGTCGAGTATGATCGAG
TGATTACAATTTGGCTATGGACGATACTTGCCAAGACTCGCCCAACTCAT
GATATTAGCCCTTCACGTGAATACCTGTAGGAATGCTCCTCGCCGGTCAT
GGGAGAATCAATCGAGCAACACTACGGGGAGGGCGAAAGTTGGTTGCTCA
TCTACTAGCGTAAATCTTTCGAGACAAGATATTACAGGGTTCGATTTCAT
GGAGGATACACCGGTAAGGGGCCAAAGTCCGTGTTGCGAATAGAGCTGCA
ATATTCTAGAACCAATGGTAGCATATCTACTATATTTGTAGCATGTATGG
TATGGTGTTGCCGTCTGTTTACGGTCCGTGACAATTGGCATTTTATAGTC
TCCAGAGTTTGCTCTTTCGGTTTTTGCGCAAAATGTTCACCCTCCGGACA
TATATGAATGGAGCATTCGCAACTATCTCGAACTATTATTTCGCCTTCGG
TCGTATTACACGTCTATGAATGGTCACTTTGCAGACGGTCAACAGATGGT
TGTATACCCGGCGAACAGTCACATATGGAGGTGCTCTTTACTTCTCGGAT
GGTACGGCGCAGACTGAATACTCTATCTGCCCGGGCTTTTTTATGCTCTA
TGGTTATATCGAGTACACTGCATATTATTCGCGTCACATGGACATCTCCC
CGGACTCAAACAGATACAGTGTTCGTTCCAAATTTCTCGTATTTATTCGT
GTCTTGTATTCGTATTGTCCAGGGGGTGAAAAAATTCTAGTTGTGAACAT
TTCACATTCCCGACTCCTTCCGCCTCCTTCCGAAATTCTCGCTAACTCGA
AAGGTTGGTATTAGAGCCTCGGGGGGACAACAATGTACACATCCAATAAC
GACGAATCTGTTATCTGAAACGACGAATTAGACATTAATATCTCGACTCC
CGACAGAGGTCATGCTGGCCGAGGGATCAGCTGAAACATACAACATCATG
TACAGACACGGTCTAATAGTGTGAAGTATTAATAGGACCAAGAAGCAATG
ATATTCAATTTGTATTCAAGTTAAGGGGTCGAAATTAGTCGTCTTAGATG
ACTAAATAGTCGTCAAATGTGTGCTACAATGGGCGATATCTAGTACCAAA
TGAAGTCTCGACAGAAAATCCGGATTTTCGCGTGGGACCCTTAGACTTTG
GTACAGTGCAGCTGCACAATGACAAGAACATTTGCGACCCCAACGCCACC
ATTCATTTGAAACATACCACCTGGTAAATATTCACTTTGCCATCGTTTAT
CTGTGCTTTTTCTTTTTTTTGGCGTTATGCAGCTGAACGACCGAGATAAA
GTCAACGGTCGCATGAATGCATTGGATGGGGACGAGACCAGCCCTACACG
CACGGCTGTCTCGGCGAACCGTCTCAATCAGCACAGCGGACGAGCGAAGT
CGTTATTTGACTTGTTGCAAGAATTATCAGCCCCACCCAAGTGAATGTCG
ATCTTTTTGCAAGCGAAATTGACAGACCTACATCGTGCCCAAGTGCCCGA
CTGCAAATAGTGGAATAGTTGGTACCTTTGTTGATCAGCAGTACTATCTA
CGGTCACCCACGCGTCTACCACCAGTATCGTACACCTATGTTGCGTGTGC
TATTTTATAATCTCATCATTCCTTTTTTCTTGCCCTTTTGACGTCCCCGC
TGCCCAACTCTGCACCCACCCGCTCCGGGGCAAGTGCAACCCCTGCCGGC
TGTCCGTCGCTTCAAGGCCCGGTACATGGGACCCCCCAAGGCACTTCGAG
TCTGGTAGAATCCTCAAGTGGCTTGGATGCCACCGGCAGGGTGGGGGACG
GATTTCGAAAACGCAAGGGTGAATGGGGAGGTGGTATCGCTACTAATAGC
GTGCGCGGTGTGCAGTCTAGGAGAAGATCTATGTCTGTTGGCGCTGTTCG
CGGCCCTCCGACCTTGCCGTTGCGACCAATACCCGCGTGTATCAAGCCCA
CTGGGATCGCGTCTTCTGCTGATCGCTCACGCCGCGTCACGTTTGTTGGC
ATCGGGCTGGCTCGCCCTGCAGAGGTGAGGGGCATGCCGATGGGCTTCGC
GTCAAGATCGTAACTCGTAGTACAATGCCCACCTGTTTGGTGTTGTTTGT
TCCCAAGTAGAGCAAAGATTTCACGTCATGGGAGGTGCGCAAAGCCGGTC
ACCTCTGATAGCTGTGTTTGTGCCTCTCCGTCTTCCCAGGAAAACCTGTC
ATCGACAGTCCCTACCTTACGCGCGAAGGGGCCCATCGATCTCCAACAAG
TGACCGGTGTCGCCGGTATCCGTACTCCTACCTTGCCGCCTGGCCGCGGT
GGTAGCAACGACCTGGGCCACACTTTCATCAGCACAGGTGACGGCAAGAG
TTCAAACAACAACGACCGCGAGCCTCAAAGGAGGCGTCTTGGCCATGACA
TGCCAGAGACATCTCAAGAGGGAACGCATCGTCCCAAACGATCTTCGGTG
TCTGGACGGCAGTTGCAAAGGGAGTCAGTGGTAACAGCGGCGGAGGGATT
GGGTCGGAGAGTGGAGGCAGAACGCAGGGACATTCGTTTGGGGCAAACAC
AGAAGAACGATGAAGTCGTTTGCGGAGACAGTGGCATGCCAGGCAGGGTC
ATTGACGTGAGCGTGCCTGCCAGAGGTGATGAGAGATGGGACGAAGGAGA
GCGCATAGGGATTGGACAATCTCAACATCGCTGTGAGCAAATGGGTCGGG
GTAGTGTAGATGAAAGTCAAGAAGCGAGGCTGCTTCACGCGAACAATGTC
AACGCACAATGGCTTTGTCAGGATGACGATCTTCGACATCAGGGTGGATT
ATGGATGACCCAAGAGGAGCAGGATCCTCATGAAGATCGGGACTCGTGGA
AAACCCACGCAGATGGAGGGAATGAGCAGGGGCCAACTCCGTCCAAGTAC
TCGATGACGACAGCACCAGCTCCACCGCCAGAGCCTACGGGGCGGACTGC
TCAAAGCCCGAGAGAGGGTCATTGGATTCAAAAGTCTGAGAACCACAGCG
GGGTCAGCAATCCCTGGGCGACGCATCCCCGTGTACGGAATGGTCCTTTC
ATAACGCAATCCGACCGCTCGATGATACCAACGGCACCACCAGATTCGAG
GGCATGGGCTACACATGACCCTACAACACGTCGACGAGATCGCGGGGCAG
CGGTCGATGTCAAACCTTGTCGGCAAGATGATGTACCTCCGGAGGGTGAT
CTGCGGGAGCGCCAAGATGGATCGGCAAGAAATGGTGGACAGGTGCATGG
TGGTCGTGAAAAGCTACCAGTATTTCTTGTTTTTTTATCGTATTTGTTTT
GTGCTCGTAGGTACCTTTTTCTCCGTGTGGGAGTTAATATGTCATTTAGG
CGAAGGGTTTGGCTCAATGCGCCAGGAGCATTTTTACAGAATTCCTGTCC
GTGTCCTTTTCCCGTAGCCAAGCCATCTTGAAACGAAAAATCCTAGGTGC
CTCAGCATTTCACCATTTCCGCAGATGTGGGACTGTGAGCCGGTTGGTGA
GGACAGCGGAAGGGTTGACACCGAGGTTGGGGGCGATTGCAAGGAGCTGG
CAAGAGTGCGCGGGCTTTGCCGCTTGAGGGGTACCATTTTGGCGTTGGTA
GAATGGTGAGGCATGAGCAAGATCGGAAAGTGGTGCGGGGTGTAAGTTCA
TGTATATGTTGTGTTGTGGAGCAGTGAGCCGATTGACAGATTGACGCAAG
TGAGACAGGGGTGCTTATTACACAACCTTCAGGATTTTCTCTTTGAGACA
TGCGATAGATCATTGGGCCGGGGTTTTGCGATGGTTGACTGCTCCGAACC
GATGTCACGCGCAAACGTATCCAAGCAGTCCGTACGTGGACGAAAATTTC
TCGTTGTCGTGAGCGCCCGAAACGAACCCAAGCTGAAAATAATCTCTACC
CAAACACTCAGGAACGTGATGGATTCAACCGGCGTAGCCTTTTCCGAGGT
CAGCTTTATGCTCGCCACATCGCTCAAGCGAGACTGGCCGCAGCAATACA
TCGCCTATCTAGAGGCCAAACTGATCTTCGAGACCGAGGATTGTCCGTAT
CCTGAAGCTTCGGGGCGAGGAGATGTTGCCGCGGCGGGGTCTGGAGCCGA
AATGGTAGTGTGGAATGCCGATGATTAGTAACCTTCCTTCCCCCCGTTGC
AATGTGGTAGCTGGATTCGCAGTTTGCTGAGGTTTGTCTTTGTCATCGGG
GGGGGGGGCTTATCTTTGAGGCGCTTGTACATCCGCGTTGGCCACCCGTT
GAGCATGCCGCGAAGAGATCTATTACAGTTCGTAGAAATCCTTATTTATA
TGAATGCTTTATGTTTGGCGAAACCGAGGGAATGGCGTCCCGTATCGACT
TCTCCATCCTGCTGCTCTAGACACAACTAAAAGTAACGGTATTGGGAAGC
ATTATCGCACTGTACATTTTGCCTATGTATTGTAGTGGGAGGAGACTGTC
AAGTATCTTGTACCGCTAGAAGCAGTTTGTTCACGTATTATGCCGAATGA
TGTGTTATGCGTAGCAAATTACACCGGAGCACATACACCGTGCATCATTG
TGTCACGAAGAGAGGGTAATATGTAAAGATATTACCTCCCTCCACATAGA
TGCTTTTTTTCTGCCGCTGCGATGTTGGGTAAATGTGGCTTGTCTCTACT
GCATGTTGAATATTGTACCATTCACACGTTTAGTGAAAATTATACGTTCG
TAATGAGAACATTACCTACTGCACGCGAAGACTGTTTCCCTCTTTTGACG
GTGTAAATAGTGGCAATTTATGTGTTGTATGTTCGCATGAATGCACTCGT
ACCAATGAATTCATTGTTGAAATAAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig8:12113..17388- >mRNA_H-paniculata_contig8.16017.1 ID=mRNA_H-paniculata_contig8.16017.1|Name=mRNA_H-paniculata_contig8.16017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3090bp|location=Sequence derived from alignment at H-paniculata_contig8:12113..17388- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTCTGTTGGCGCTGTTCGCGGCCCTCCGACCTTGCCGTTGCGACCAAT ACCCGCGTGTATCAAGCCCACTGGGATCGCGTCTTCTGCTGATCGCTCAC GCCGCGTCACGTTTGTTGGCATCGGGCTGGCTCGCCCTGCAGAGATGTCT GTTGGCGCTGTTCGCGGCCCTCCGACCTTGCCGTTGCGACCAATACCCGC GTGTATCAAGCCCACTGGGATCGCGTCTTCTGCTGATCGCTCACGCCGCG TCACGTTTGTTGGCATCGGGCTGGCTCGCCCTGCAGAGGAAAACCTGTCA TCGACAGTCCCTACCTTACGCGCGAAGGGGCCCATCGATCTCCAACAAGT GACCGGTGTCGCCGGTATCCGTACTCCTACCTTGCCGCCTGGCCGCGGTG GTAGCAACGACCTGGGCCACACTTTCATCAGCACAGGTGACGGCAAGAGT TCAAACAACAACGACCGCGAGCCTCAAAGGAGGCGTCTTGGCCATGACAT GCCAGAGACATCTCAAGAGGGAACGCATCGTCCCAAACGATCTTCGGTGT CTGGACGGCAGTTGCAAAGGGAGTCAGTGGTAACAGCGGCGGAGGGATTG GGTCGGAGAGTGGAGGCAGAACGCAGGGACATTCGTTTGGGGCAAACACA GAAGAACGATGAAGTCGTTTGCGGAGACAGTGGCATGCCAGGCAGGGTCA TTGACGTGAGCGTGCCTGCCAGAGGTGATGAGAGATGGGACGAAGGAGAG CGCATAGGGATTGGACAATCTCAACATCGCTGTGAGCAAATGGGTCGGGG TAGTGTAGATGAAAGTCAAGAAGCGAGGCTGCTTCACGCGAACAATGTCA ACGCACAATGGCTTTGTCAGGATGACGATCTTCGACATCAGGGTGGATTA TGGATGACCCAAGAGGAGCAGGATCCTCATGAAGATCGGGACTCGTGGAA AACCCACGCAGATGGAGGGAATGAGCAGGGGCCAACTCCGTCCAAGTACT CGATGACGACAGCACCAGCTCCACCGCCAGAGCCTACGGGGCGGACTGCT CAAAGCCCGAGAGAGGGTCATTGGATTCAAAAGTCTGAGAACCACAGCGG GGTCAGCAATCCCTGGGCGACGCATCCCCGTGTACGGAATGGTCCTTTCA TAACGCAATCCGACCGCTCGATGATACCAACGGCACCACCAGATTCGAGG GCATGGGCTACACATGACCCTACAACACGTCGACGAGATCGCGGGGCAGC GGTCGATGTCAAACCTTGTCGGCAAGATGATGTACCTCCGGAGGGTGATC TGCGGGAGCGCCAAGATGGATCGGCAAGAAATGGTGGACAGGAAAACCTG TCATCGACAGTCCCTACCTTACGCGCGAAGGGGCCCATCGATCTCCAACA AGTGACCGGTGTCGCCGGTATCCGTACTCCTACCTTGCCGCCTGGCCGCG GTGGTAGCAACGACCTGGGCCACACTTTCATCAGCACAGGTGACGGCAAG AGTTCAAACAACAACGACCGCGAGCCTCAAAGGAGGCGTCTTGGCCATGA CATGCCAGAGACATCTCAAGAGGGAACGCATCGTCCCAAACGATCTTCGG TGTCTGGACGGCAGTTGCAAAGGGAGTCAGTGGTAACAGCGGCGGAGGGA TTGGGTCGGAGAGTGGAGGCAGAACGCAGGGACATTCGTTTGGGGCAAAC ACAGAAGAACGATGAAGTCGTTTGCGGAGACAGTGGCATGCCAGGCAGGG TCATTGACGTGAGCGTGCCTGCCAGAGGTGATGAGAGATGGGACGAAGGA GAGCGCATAGGGATTGGACAATCTCAACATCGCTGTGAGCAAATGGGTCG GGGTAGTGTAGATGAAAGTCAAGAAGCGAGGCTGCTTCACGCGAACAATG TCAACGCACAATGGCTTTGTCAGGATGACGATCTTCGACATCAGGGTGGA TTATGGATGACCCAAGAGGAGCAGGATCCTCATGAAGATCGGGACTCGTG GAAAACCCACGCAGATGGAGGGAATGAGCAGGGGCCAACTCCGTCCAAGT ACTCGATGACGACAGCACCAGCTCCACCGCCAGAGCCTACGGGGCGGACT GCTCAAAGCCCGAGAGAGGGTCATTGGATTCAAAAGTCTGAGAACCACAG CGGGGTCAGCAATCCCTGGGCGACGCATCCCCGTGTACGGAATGGTCCTT TCATAACGCAATCCGACCGCTCGATGATACCAACGGCACCACCAGATTCG AGGGCATGGGCTACACATGACCCTACAACACGTCGACGAGATCGCGGGGC AGCGGTCGATGTCAAACCTTGTCGGCAAGATGATGTACCTCCGGAGGGTG ATCTGCGGGAGCGCCAAGATGGATCGGCAAGAAATGGTGGACAGATGTGG GACTGTGAGCCGGTTGGTGAGGACAGCGGAAGGGTTGACACCGAGGTTGG GGGCGATTGCAAGGAGCTGGCAAGAGTGCGCGGGCTTTGCCGCTTGAGGG GTACCATTTTGGCGTTGGTAGAATGATGTGGGACTGTGAGCCGGTTGGTG AGGACAGCGGAAGGGTTGACACCGAGGTTGGGGGCGATTGCAAGGAGCTG GCAAGAGTGCGCGGGCTTTGCCGCTTGAGGGGTACCATTTTGGCGTTGGT AGAATGGAACGTGATGGATTCAACCGGCGTAGCCTTTTCCGAGGTCAGCT TTATGCTCGCCACATCGCTCAAGCGAGACTGGCCGCAGCAATACATCGCC TATCTAGAGGCCAAACTGATCTTCGAGACCGAGGATTGTCCGTATCCTGA AGCTTCGGGGCGAGGAGATGTTGCCGCGGCGGGGTCTGGAGCCGAAATGG TAGTGTGGAATGCCGATGATTAGGAACGTGATGGATTCAACCGGCGTAGC CTTTTCCGAGGTCAGCTTTATGCTCGCCACATCGCTCAAGCGAGACTGGC CGCAGCAATACATCGCCTATCTAGAGGCCAAACTGATCTTCGAGACCGAG GATTGTCCGTATCCTGAAGCTTCGGGGCGAGGAGATGTTGCCGCGGCGGG GTCTGGAGCCGAAATGGTAGTGTGGAATGCCGATGATTAG back to top
|