mRNA_H-paniculata_contig7994.16011.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7994.16011.1
Unique NamemRNA_H-paniculata_contig7994.16011.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7994.16011.1 vs. uniprot
Match: D7G468_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G468_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 7.880e-89
Identity = 139/172 (80.81%), Postives = 149/172 (86.63%), Query Frame = 1 
Query:    4 VKAPKWYAADDVKKKKPSQKHNPTKLRSTIKPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSMTVDVSKVKIPVEDDSYFARVETPKKAAEDQFFEQGSKAATVSDKRKEDQKTVDAGILAAVTAEPLLKAYLNAKFSLKNGDRPHEMKF 519
             KAPKWY+ DDVK K   QKHNPTKLRSTI PGT+LILLSGRFRGKRVVFLKQLPSGTLLVTGPY VNGVP+RRVNQAYVIATSM+VDVSKV IP  DDSYF R E   K  EDQFFEQG+K++TVSDKRK DQKTVDAG+LAA+T  P+LKAYLNAKFSLK GDRPHEM F
Sbjct:    9 AKAPKWYSGDDVKPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDKRKADQKTVDAGVLAAMT-NPMLKAYLNAKFSLKKGDRPHEMIF 179
[Close]
BLAST of mRNA_H-paniculata_contig7994.16011.1 vs. uniprot
Match: A0A835YT51_9STRA (60S ribosomal protein L6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT51_9STRA)

HSP 1 Score: 217 bits (552), Expect = 2.910e-69
Identity = 116/171 (67.84%), Postives = 132/171 (77.19%), Query Frame = 1 
Query:   19 WYAADDVKKKKPSQK----HNPTKLRSTIKPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSMTVDVSKVKIPVEDDSYFARVETPKKAAEDQFFEQGSKAATVSDKRKEDQKTVDAGILAAVTAEPLLKAYLNAKFSLKNGDRPHEMKF 519
            WY ADD+K  + S+     H PTKLRS+I PGTV +LLSGRFRGKRVVFLKQ+ SGTLLVTGPYKVNGVPLRRVNQAYVIATS  +DVSKV +   DD+YFAR    KK AED FF Q SK + VSD++K+DQ  VDA ILA ++ + LLKAYLNAKFSL   DRPHEM F
Sbjct:   15 WYPADDIKAPRKSKAKRSVHKPTKLRSSITPGTVCVLLSGRFRGKRVVFLKQMASGTLLVTGPYKVNGVPLRRVNQAYVIATSTKLDVSKVDVSAIDDAYFARAPEAKKTAEDAFFAQASKESVVSDQKKKDQDVVDASILAGLSKDKLLKAYLNAKFSLTKKDRPHEMVF 185
[Close]
BLAST of mRNA_H-paniculata_contig7994.16011.1 vs. uniprot
Match: A0A7S1U5W8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5W8_9STRA)

HSP 1 Score: 205 bits (521), Expect = 8.640e-64
Identity = 113/170 (66.47%), Postives = 131/170 (77.06%), Query Frame = 1 
Query:   13 PKWYAADDVKKKKPSQKHN-PTKLRSTIKPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSMTVDVSKVKIPVEDDSYFARVETPKKAAEDQFFEQGSKAATVSDKRKEDQKTVDAGILAAVTAEPLLKAYLNAKFSLKNGDRPHEMKF 519
            P  Y ADDVKK     + N PTKLR++I PGTVLI+L+GRFRGKRVVFLKQL SGTLLVTGPYKVNGVPLRRVNQAYVIATS+ VD++ V +P  DD +FAR +   K  E+QFF     A  VS  RK+ QK VDAGILAAV   PLL+AYL A+FSL+NGD+PH+MKF
Sbjct:   71 PAMYPADDVKKPLMRFRVNKPTKLRASITPGTVLIMLAGRFRGKRVVFLKQLSSGTLLVTGPYKVNGVPLRRVNQAYVIATSVVVDLAGVSLPDIDDEFFAREKKESKTDEEQFFSNEPTATVVSQARKDAQKAVDAGILAAVKKVPLLQAYLGARFSLRNGDKPHKMKF 240
[Close]
BLAST of mRNA_H-paniculata_contig7994.16011.1 vs. uniprot
Match: A0A6G0WU17_9STRA (60S ribosomal protein L6 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WU17_9STRA)

HSP 1 Score: 201 bits (511), Expect = 2.660e-62
Identity = 112/173 (64.74%), Postives = 129/173 (74.57%), Query Frame = 1 
Query:   16 KWYAADDVKKKKPSQKH-----NPTKLRSTIKPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSMTVDVSKVKIPVEDDSYFARVETPKKAAEDQFFEQGSKAATVSDKRKEDQKTVDAGILAAVTAEPLLKAYLNAKFSLKNGDRPHEMKF 519
            KWY  D V K  PS K        TKLR++I PGTVLILLSGRFRGKRVVFLKQL SGTLLVTGPYKVNGVPLRRVNQA+VIATS  VD+S VK+P  +D+YFA+ +T  K  E+ FF Q S AA VS++RK+DQK VDA ++  + A PLLK YLNAKFSL    R HE+KF
Sbjct:   66 KWYPTDYVPKPLPSAKTARNSVKTTKLRNSITPGTVLILLSGRFRGKRVVFLKQLASGTLLVTGPYKVNGVPLRRVNQAFVIATSTKVDISDVKLPEINDAYFAKEKTHAKKDEEAFFAQSSTAAIVSEQRKKDQKEVDAALIKKINATPLLKQYLNAKFSLSKTQRVHELKF 238
[Close]
BLAST of mRNA_H-paniculata_contig7994.16011.1 vs. uniprot
Match: F0WZ30_9STRA (60S ribosomal protein L6 n=2 Tax=Albugo TaxID=65356 RepID=F0WZ30_9STRA)

HSP 1 Score: 197 bits (502), Expect = 4.380e-61
Identity = 113/174 (64.94%), Postives = 131/174 (75.29%), Query Frame = 1 
Query:   16 KWYAADDVKKKKPSQK--HNPTK---LRSTIKPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSMTVDVSKVKIPVEDDSYFARVETPKKAA-EDQFFEQGSKAATVSDKRKEDQKTVDAGILAAVTAEPLLKAYLNAKFSLKNGDRPHEMKF 519
            KWY AD + K+  S K   N  K   LR +I PGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYK+NGVPLRRVNQAYVIATS  +D+S V     DDSYFA+ +  KK++ EDQFFEQ + A  +SD+R++DQK VD  ++  + AEPLLKAYLNAKFSL   D  HEMKF
Sbjct:   54 KWYPADYIPKRLASAKTVRNSKKTAVLRKSITPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKINGVPLRRVNQAYVIATSTKIDISGVPSIDIDDSYFAKEKVKKKSSKEDQFFEQSTSAPVISDQRRKDQKAVDEVLINQIEAEPLLKAYLNAKFSLTKKDIVHEMKF 227
[Close]
BLAST of mRNA_H-paniculata_contig7994.16011.1 vs. uniprot
Match: A0A5D6Y3Z6_9STRA (60S ribosomal protein L6 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3Z6_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.330e-60
Identity = 110/174 (63.22%), Postives = 129/174 (74.14%), Query Frame = 1 
Query:   16 KWYAADDVKKKKPSQKH-----NPTKLRSTIKPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSMTVDVSKVKIPVEDDSYFARVE-TPKKAAEDQFFEQGSKAATVSDKRKEDQKTVDAGILAAVTAEPLLKAYLNAKFSLKNGDRPHEMKF 519
            KWY AD + K  PS K         KLR +I PG+VLILLSGRFRGKRVVFLKQL SG LLVTGPYKVNGVPLRRVNQ+YVIATS  VD+  VK+P  +D+YFA+ + + KK+ E+QFF Q + A  + D+RK+DQK VDA +L  V AEPLLKAYLNAKFSL   DR H +KF
Sbjct:   56 KWYPADYIPKPLPSAKTARNSVKTAKLRKSIVPGSVLILLSGRFRGKRVVFLKQLESGCLLVTGPYKVNGVPLRRVNQSYVIATSTKVDLEGVKLPEINDAYFAKEKVSSKKSKEEQFFAQSASAPVIPDQRKKDQKAVDAALLKKVEAEPLLKAYLNAKFSLTKNDRAHALKF 229
[Close]
BLAST of mRNA_H-paniculata_contig7994.16011.1 vs. uniprot
Match: A0A485KCY7_9STRA (60S ribosomal protein L6 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCY7_9STRA)

HSP 1 Score: 195 bits (495), Expect = 6.860e-60
Identity = 107/173 (61.85%), Postives = 128/173 (73.99%), Query Frame = 1 
Query:   16 KWYAADDVKKKKPSQKH-----NPTKLRSTIKPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSMTVDVSKVKIPVEDDSYFARVETPKKAAEDQFFEQGSKAATVSDKRKEDQKTVDAGILAAVTAEPLLKAYLNAKFSLKNGDRPHEMKF 519
            KWY  D + +  PS K         KLR++I PGTVLILLSGRFRGKRVVFLKQL SGTLLVTGPYKVNGVPLRRVNQA+VIATS  +D+S VK+P  +D+YFA+ +T  K  E+QFF Q S +A VS++RK+DQK VDA +L  + A   LK YLNAKFSL   D+ HE+KF
Sbjct:   65 KWYPTDYIPRPLPSAKTARNSVKTAKLRASITPGTVLILLSGRFRGKRVVFLKQLASGTLLVTGPYKVNGVPLRRVNQAFVIATSTKIDISDVKLPELNDAYFAKEKTHAKKDEEQFFAQSSTSAIVSEQRKKDQKAVDAALLKKINATAHLKHYLNAKFSLTKNDKVHELKF 237
[Close]
BLAST of mRNA_H-paniculata_contig7994.16011.1 vs. uniprot
Match: D0MZV7_PHYIT (60S ribosomal protein L6 n=12 Tax=Phytophthora TaxID=4783 RepID=D0MZV7_PHYIT)

HSP 1 Score: 194 bits (492), Expect = 1.150e-59
Identity = 105/178 (58.99%), Postives = 127/178 (71.35%), Query Frame = 1 
Query:    1 KVKAPKWYAADDVKKKKPSQKHN-----PTKLRSTIKPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSMTVDVSKVKIPVEDDSYFARVETPKKAAEDQFFEQGSKAATVSDKRKEDQKTVDAGILAAVTAEPLLKAYLNAKFSLKNGDRPHEMKF 519
            KV   KWY AD + K  PS K         KLR +I PGTVLILLSGRFRGKRVVFL QL SG LLVTGPYKVNGVPLRRVNQ+YVIATS  V++  + +P  DD+YFA+ +  KK+ E+QFF Q S A  + ++RK+DQK VD+ ++  + AEP LK+YLNAKFSL   DR H +KF
Sbjct:   43 KVSTKKWYPADYIPKPLPSAKTKRNSVKTAKLRKSITPGTVLILLSGRFRGKRVVFLNQLASGLLLVTGPYKVNGVPLRRVNQSYVIATSTKVNIEGLALPAIDDAYFAKEKAAKKSKEEQFFAQSSTAPVIPEQRKKDQKAVDSALIKKLEAEPFLKSYLNAKFSLTKNDRAHALKF 220
[Close]
BLAST of mRNA_H-paniculata_contig7994.16011.1 vs. uniprot
Match: A0A8K1FLY4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLY4_PYTOL)

HSP 1 Score: 194 bits (493), Expect = 1.220e-59
Identity = 106/175 (60.57%), Postives = 131/175 (74.86%), Query Frame = 1 
Query:   19 WYAADDVKKKKPSQK-----HNPTKLRSTIKPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSMTVDVSKVKIPVEDDSYFARVETP-KKAAEDQFFEQGSKAAT--VSDKRKEDQKTVDAGILAAVTAEPLLKAYLNAKFSLKNGDRPHEMKF 519
            WY AD + KK PS K         KLR +I PGTVLILLSGRFRGKRVVFLKQLPSGTLL+TGPYK+NGVPLRRVNQAYVIATS  VD+S V +P  DDSYF + ++  KK+AE+QF+E   ++ +  VS++RK+DQK VD  +L+ ++ EP L+ YLNAKF+L   DR HE+ F
Sbjct:   59 WYPADYIPKKLPSAKTVRNSKKTAKLRKSITPGTVLILLSGRFRGKRVVFLKQLPSGTLLITGPYKINGVPLRRVNQAYVIATSTKVDLSDVTLPEIDDSYFVKPKSSGKKSAEEQFYESSDESTSRVVSEQRKQDQKAVDDALLSKISNEPYLRTYLNAKFTLTKNDRVHELTF 233
[Close]
BLAST of mRNA_H-paniculata_contig7994.16011.1 vs. uniprot
Match: K3W6W0_GLOUD (60S ribosomal protein L6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6W0_GLOUD)

HSP 1 Score: 194 bits (492), Expect = 1.620e-59
Identity = 109/179 (60.89%), Postives = 128/179 (71.51%), Query Frame = 1 
Query:    1 KVKAPKWYAADDVKKKKPSQKH-----NPTKLRSTIKPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSMTVDVSKVKIPVEDDSYFARVE-TPKKAAEDQFFEQGSKAATVSDKRKEDQKTVDAGILAAVTAEPLLKAYLNAKFSLKNGDRPHEMKF 519
            KV   KWY AD + K  PS K         KLR +I PG+VLILLSGRFRGKRVVFLKQL SG LLVTGPYKVNGVPLRRVNQAYVIATS  VD+  V +P  +D+YFA+ + + KK  E+QFF Q + A  + D+RK+DQK VDA ++  + AEP LKAYLNAKFSL   DR H +KF
Sbjct:   53 KVSTKKWYPADYIPKPLPSAKTARNSVKTAKLRKSIVPGSVLILLSGRFRGKRVVFLKQLESGLLLVTGPYKVNGVPLRRVNQAYVIATSTKVDLEGVSLPEINDAYFAKEKVSSKKTKEEQFFAQSAAAPVIPDQRKKDQKAVDAALIKKIDAEPFLKAYLNAKFSLTKNDRAHALKF 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7994.16011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G468_ECTSI7.880e-8980.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YT51_9STRA2.910e-6967.8460S ribosomal protein L6 n=1 Tax=Tribonema minus T... [more]
A0A7S1U5W8_9STRA8.640e-6466.47Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6G0WU17_9STRA2.660e-6264.7460S ribosomal protein L6 n=1 Tax=Aphanomyces eutei... [more]
F0WZ30_9STRA4.380e-6164.9460S ribosomal protein L6 n=2 Tax=Albugo TaxID=6535... [more]
A0A5D6Y3Z6_9STRA1.330e-6063.2260S ribosomal protein L6 n=1 Tax=Pythium brassicum... [more]
A0A485KCY7_9STRA6.860e-6061.8560S ribosomal protein L6 n=1 Tax=Aphanomyces stell... [more]
D0MZV7_PHYIT1.150e-5958.9960S ribosomal protein L6 n=12 Tax=Phytophthora Tax... [more]
A0A8K1FLY4_PYTOL1.220e-5960.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3W6W0_GLOUD1.620e-5960.8960S ribosomal protein L6 n=1 Tax=Globisporangium u... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7994contigH-paniculata_contig7994:6639..9199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.9
Seed ortholog evalue6.5e-69
Seed eggNOG ortholog2880.D7G468
Preferred nameRPL6
KEGG koko:K02934
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsCOG2163@1,KOG1694@2759
Ec32 ortholog description60S ribosomal protein L6E
Ec32 orthologEc-02_001470.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons3
Model size522
Cds size522
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7994.16011.1prot_H-paniculata_contig7994.16011.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7994 6639..9199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930997.3129833-CDS-H-paniculata_contig7994:6638..68281622930997.3129833-CDS-H-paniculata_contig7994:6638..6828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7994 6639..6828 +
1691481543.7489197-CDS-H-paniculata_contig7994:6638..68281691481543.7489197-CDS-H-paniculata_contig7994:6638..6828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7994 6639..6828 +
1622930997.3354657-CDS-H-paniculata_contig7994:8544..87231622930997.3354657-CDS-H-paniculata_contig7994:8544..8723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7994 8545..8723 +
1691481543.7688885-CDS-H-paniculata_contig7994:8544..87231691481543.7688885-CDS-H-paniculata_contig7994:8544..8723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7994 8545..8723 +
1622930997.3594022-CDS-H-paniculata_contig7994:9046..91991622930997.3594022-CDS-H-paniculata_contig7994:9046..9199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7994 9047..9199 +
1691481543.7824159-CDS-H-paniculata_contig7994:9046..91991691481543.7824159-CDS-H-paniculata_contig7994:9046..9199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7994 9047..9199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7994.16011.1

>prot_H-paniculata_contig7994.16011.1 ID=prot_H-paniculata_contig7994.16011.1|Name=mRNA_H-paniculata_contig7994.16011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
KVKAPKWYAADDVKKKKPSQKHNPTKLRSTIKPGTVLILLSGRFRGKRVV
FLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSMTVDVSKVKIPVEDD
SYFARVETPKKAAEDQFFEQGSKAATVSDKRKEDQKTVDAGILAAVTAEP
LLKAYLNAKFSLKNGDRPHEMKF*
back to top

mRNA from alignment at H-paniculata_contig7994:6639..9199+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7994.16011.1 ID=mRNA_H-paniculata_contig7994.16011.1|Name=mRNA_H-paniculata_contig7994.16011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2561bp|location=Sequence derived from alignment at H-paniculata_contig7994:6639..9199+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTCAAGGCGCCCAAGTGGTATGCGGCTGATGATGTGAAGAAGAAGAA
GCCGTCTCAAAAGCATAACCCCACCAAGCTCAGAAGCACCATCAAGCCAG
GAACTGTGCTGATCCTACTGTCTGGACGGTTTCGCGGCAAGCGGGTTGTC
TTTCTCAAGCAGCTTCCGTCGGGAACACTGTTGGTGACCGGTGAGTCGTG
AACCGTGCTCGAAGGTTTCCGGGTTTTCAACGCTTCATCCCCCGACATCT
GCCAGTGTGAAGTACTGTGCATTTTTCGAACTGGACCAGCTGGCATCGTA
TTTGCATACCTAGTTTTCCTCCCACCGCCCACGGCTCGCCGCTGGTCACA
AGTCATTTGTAGTCCTGTTTGTATAATGTGTGGCGTCCGTGGTTTAAATG
AGACGTTTTTGAAACAGCGATGAATTTAGTGCTGGGTCTATTAACCGTAG
AAGGATTGCAGGGAAACACGGATTGAAGTATGTGTGCTACTTCCACAATC
CGGATTCCCCGCGAAGTCGTGGGCTAGTGAGGTTGATGAATTTGCTGTCT
CATGATCGCAGATCAGTGTTTTTTCACTGATGGTCTTGAATATAGTGGTG
ATACGCTGTTTGAATTGATGCATGATTCTATGAATCATGTTACCCCGCGT
ATATTTGGGAGTCATCATACCTACTTGCATGCCGCAGTCGACGAAGAGCC
TTGTTTGAAAATCTATTCAAATTGACTTAACTAGAGATAAGTTGTCGACG
GTTCGCCTCATATTATTGATTAACTCCACCTCACTCGTAACGATCACTTC
AGCGCAAGATCAGCAGCTGTACTGCAAGTATTGAGCTCCACGAACTTCGG
TACAACCTCATCTGTCAGTCGTTGAACAGGCGACACATTGTACTGGAGTT
CAGAAGGCTCGAAGAAAATGCAGATTGAGGGATATAACTTTCAGAGATTA
AAATGCAATACATGAAAAATATGGACGAGAGAAACGTACATGTGAACTGA
TGAAAACGGAAGGCGTACACATTTGCACCAAGTTTAGATTTCTTATTTTC
TGGATGGGCGTCTACAACCAAGACGCGAAACGTTCATTATTCGTTTTGGT
GGTTTGTCCATGAAAGTCATCGTGGTATTTTTTTGAATGGTGGAAACGTA
CACGAGACTCAGTGGATGAAAGGAAACGGCCTTGGGGGGGATTGCCATTC
GAAATGATAATGCTGCGTAATATCATGTGACAAGTTTTACCGCTCTACTA
CTATGAGCTTCATGGGGCTGGGCGTGCAAACTGTTGCTCTGAGGCCTCTA
TTTTAACCTCGATATTGTTTCTTCCACCATTGGCCAAGCAAGACTTGTAA
AATAAACCTCGTGACGTTACGGATGAGTCTGTGATGCAATTAAATCTGTA
GAAATTTTATTGTGAAAAAATATGAATAGTGATGGCGGAATTCATGAATT
TCAAGTTGAATGCTTTTATTTGGTGCAAGGAAGCCAGATAAATGATTCAG
CGCCCGATGACGCAAAAATGTGCGCGAGGCATGAGTTGGTGTGGATCAAA
TGGAGTGACCCGCATGCCTCAATGTGGGGGTGCCTGGAAATCAGTTTGGT
TGAATGCACTAACGGTTGATCAGCTGATGAGTGCCAACTGCTTATGAGAA
CTGAGGGCTATGAGTAGTGATGTAGGAGTGCTGTTTCGACAACGGGCAAT
CAAGTCATGGCATGAGCTGAAAGTTTAACCAGTGAGTGCGAAGCCAGTGT
CGCGTGAAGCTAGAGTCAACATACTATATTTAAAAAATCCCCATTCCACC
CTTGCGATGAAGTTTTTTGAGTTCACCATTCGTGTGGTCAGCAGTTGTCT
CATGGTCACGATTCTTCCGTTAACGGTGTAATACTTCCTGCGTATATTGT
TAACAGGGCCGTACAAGGTGAACGGTGTTCCGCTGAGGCGAGTAAACCAG
GCGTACGTGATTGCAACGTCCATGACTGTGGACGTTTCGAAGGTCAAGAT
CCCCGTCGAGGATGACTCGTACTTCGCACGTGTCGAGACCCCGAAGAAAG
CAGCTGAGGACCAATTCTTCGAGCAAGGATCCAAGGTATCCATGGACCAA
ACGAGAAAACGCAAATACAGTTGATGTCATGAGACAAATTGAAGTCACGA
GCCTTTTCCTCAAGGCAGTTGATGTGGGAAGTCGTCAAATTTGGCTTTTG
CATAATGTTGACCAAAGTCTTGCGTGTAAATACATCCAAGTTACTAGATG
TTCACCCCCACTAGCTTTGTTGACAGTATTCGTGGACCCCATTGACTGTA
CCACGCCCTTCCTCCGTACCACCGACTTGACGGTGCTCTAGGAGGAAGGG
CGTTTGTTGCTAGGCTCCAACTTCGCCGTGATCGTATGCTCAATTTATAA
TCGTCCAGGCTGCCACTGTGTCGGACAAGAGGAAGGAGGACCAAAAGACG
GTGGATGCCGGTATTTTGGCGGCAGTCACAGCGGAGCCGCTTCTGAAGGC
GTACTTGAACGCGAAGTTTTCCCTCAAGAATGGCGACCGTCCGCATGAGA
TGAAGTTCTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7994:6639..9199+

>mRNA_H-paniculata_contig7994.16011.1 ID=mRNA_H-paniculata_contig7994.16011.1|Name=mRNA_H-paniculata_contig7994.16011.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig7994:6639..9199+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTCAAGGCGCCCAAGTGGTATGCGGCTGATGATGTGAAGAAGAAGAA
GCCGTCTCAAAAGCATAACCCCACCAAGCTCAGAAGCACCATCAAGCCAG
GAACTGTGCTGATCCTACTGTCTGGACGGTTTCGCGGCAAGCGGGTTGTC
TTTCTCAAGCAGCTTCCGTCGGGAACACTGTTGGTGACCGAAGGTCAAGG
CGCCCAAGTGGTATGCGGCTGATGATGTGAAGAAGAAGAAGCCGTCTCAA
AAGCATAACCCCACCAAGCTCAGAAGCACCATCAAGCCAGGAACTGTGCT
GATCCTACTGTCTGGACGGTTTCGCGGCAAGCGGGTTGTCTTTCTCAAGC
AGCTTCCGTCGGGAACACTGTTGGTGACCGGGCCGTACAAGGTGAACGGT
GTTCCGCTGAGGCGAGTAAACCAGGCGTACGTGATTGCAACGTCCATGAC
TGTGGACGTTTCGAAGGTCAAGATCCCCGTCGAGGATGACTCGTACTTCG
CACGTGTCGAGACCCCGAAGAAAGCAGCTGAGGACCAATTCTTCGAGCAA
GGATCCAAGGGCCGTACAAGGTGAACGGTGTTCCGCTGAGGCGAGTAAAC
CAGGCGTACGTGATTGCAACGTCCATGACTGTGGACGTTTCGAAGGTCAA
GATCCCCGTCGAGGATGACTCGTACTTCGCACGTGTCGAGACCCCGAAGA
AAGCAGCTGAGGACCAATTCTTCGAGCAAGGATCCAAGGCTGCCACTGTG
TCGGACAAGAGGAAGGAGGACCAAAAGACGGTGGATGCCGGTATTTTGGC
GGCAGTCACAGCGGAGCCGCTTCTGAAGGCGTACTTGAACGCGAAGTTTT
CCCTCAAGAATGGCGACCGTCCGCATGAGATGAAGTTCTAGGCTGCCACT
GTGTCGGACAAGAGGAAGGAGGACCAAAAGACGGTGGATGCCGGTATTTT
GGCGGCAGTCACAGCGGAGCCGCTTCTGAAGGCGTACTTGAACGCGAAGT
TTTCCCTCAAGAATGGCGACCGTCCGCATGAGATGAAGTTCTAG
back to top