mRNA_H-paniculata_contig7982.16000.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7982.16000.1 vs. uniprot
Match: D7FH12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH12_ECTSI) HSP 1 Score: 686 bits (1770), Expect = 1.090e-217 Identity = 560/1460 (38.36%), Postives = 673/1460 (46.10%), Query Frame = 1
Query: 22 VLCTHTFPRFTLSSPQDAGLMMAVLCEAIPPSSDKLMTRVAQFYLSLCGSQQKVTFLTWQLDILLDCLLGPLASMTKDKNSLPAAASWPLSXXXXXXXXXXX---SG-RECVRALAQLLYENGERLGTRFGDILPRLLCLADPFAVDIKTRHTALDAVGNLCLKNWAGFTEAQRADVCSCLTRNFDAHWRALSFTATTAATTVSSASGASCTTLGSPYPLFAAALLPTERKVVASAARGLACAVGKIGVSAVLEPATAASAAARGSRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPTRTGSRPALPDPRARVRLHVLVLLEAIAVKEAKVLYPHWALF--------LGGGGVGTGEGDL---GYTFGHGSPSTGSPVLPAGLVNIMEYDKAPQIRAAAAXXXAALVKNAPLRMWMPLAARGEGAGVGRSIGGIEQRVASMMYQLQMTLVSCLAREESPAVLAKVCACSGALVSEMPYEVGMIAAGENVRTDGRSDF------------------------EELLGGLLAALTTLMLDGSVEPSARIAASQALTAAFSTKEPLTAVDVFLWTFRAD-----PSRGSVTWRSSN-TPSTRIPTTAA--------IHDARLGPPIPSCPGSADDRNNRFAERIGYRRS--------------------------------------------PTFIPTRPVGAGADAGEECVARAGSGPPNM----RVWRRTSPAKINGANASSVRSPATPRTPSSSGAARGLGDCRTDSGECGAGDPDEGFLVDRLIAMANTPGQLRAEALCLLTRIGRSYPSHVCGE-SVTGEITEEVKKVTAGDDEDDHGHDGENGSXXXXXXXXXXXXXXXXXXXXXXXXRTWENVSGLLLRCFADPDQNLRLHALKVLEAFLLARSEQAATAVVGMETNNEKESN--GRVQAAAEDKAPASA------------CGVAVRSAGGGVXXXXGSLWGDLVQKHLQRALEDPYHGVRAVACACHGCLLDSDWEAFADDERDQCLDRLLAATRDRAAGVSVLACRVFAGLMTTAGKPDVAEWCRRPVFLGRCAARLGEMMNDSKATIRAQATLAVGNLSCSLHAMRSRSTRASILTAPTAALPDPSNSNLSHDNISQISTSRSLGP---EPVERPQLRSLCEGALRLAKSEPDHSAASAARALGYLAWNLDTSS-----DGGSNSDRRTEFFEDTNRTGIATTPALPSGGQPAETVSRYRPHAMAITTMVPKAKTLEGNE----DAVGDREDWNLQDAAVLTLAARTNAVEEAAAGLANAGVGERGGEIVVGQGRAARSGESVKDRKADTTAAKCRRGVTSVELLHRSRNYPLRAWVASAVAACALGRDASAVPPQVTIMAMEDDRHLKVRTHAAVALRAVPSTLAYGDDLPAIFGGALRLLLACGKGIVVSDPTQIRYADPLEPALRALVLHMFLLLV 4017
+L T+P ++S PQDAG M++ LCEA+P SS L RVAQ + LC QQ+V+FL WQL+I+LD + L S + P XXXXXXXX SG R+C RALAQLLYENGERLGTRF D++P LL LADP A+D+ TRH ALDA+ NLCLKNWAGF E QR +CSCLTRNF AHW ARVRL L LLE++A K+AK +YPHWALF + GGG G+ G G ST VLPAGLV+IME D APQ+ +PLR WM LA GI +RV SMM +L +LV CLA+E+SPAV+AK+C+C+GAL++EMPY A+G EE LG LL L LM+D + EPSARIAASQALTA FSTKEP+ A+D FL +FR PS +W S TP P +AA + + P+P PGSADDR NRF + ++ G + E V + PP + V T+PA S+S A G GD G G G VDRLIA+A PGQLRAEAL LLTRIGRSYP+H+ G + G + E K TA TWE VS LLLRCFADPDQNLRLHALKVLEA LLAR+EQAA A + EK S G AAE +P XXX G +W DLVQKHLQRALEDPYHGVRAVAC+CH LL SDWEAF+D ER++CL R+LAATRDRAAGV++LACRV AG+MT AG+ A WCR P FL RCAARL EMM D+K P Q+S + G + + RP+LRSLC+GALRL +EPDH+A SA RALGYLAW LD + DG D + E N + + P LP GG + V+ R A V + G E D D +LQD A+L L+ R A ++ L N G G DR+A+ AKCR VELLHR + P+R AS +G A AV + A+ DD HLKVRTHAA AL+AV AYGD LP+I GG LR L AC VV+DPTQ+RYA LE ALR+LVLH+ + LV
Sbjct: 144 ILARLTYPNSSIS-PQDAGFMLSALCEAVPRSSRGLSARVAQLFELLCAKQQRVSFLAWQLNIVLDLFVASLPSAAAEVQVAPXXXXXXXXXXXXXXXXRPPRPLSGQRDCTRALAQLLYENGERLGTRFDDVVPPLLRLADPSAIDLDTRHAALDALANLCLKNWAGFAEQQRQAICSCLTRNFVAHW---------------------------------------------------------------------------------------------------------------------------ARVRLQALALLESMAAKDAKSMYPHWALFFAPYVPGAVSGGGACGGDAAAATPGEVSEGGGGSTRPVVLPAGLVSIMESDHAPQV--------------SPLRKWMMLAXXXX--XXXXXXXGIGERVESMMLRLHRSLVLCLAQEKSPAVVAKLCSCTGALIAEMPYATSQAASGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEESLGDLLRELARLMVDVAAEPSARIAASQALTAVFSTKEPIAAIDSFLLSFRCSAAGGLPSSCRGSWGGSRATPPPSSPASAARRGNGANAVAGSGAWSPLPLRPGSADDRGNRFVGGVARNGGVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVXXXXXGGLRASDREGVRASDQMPPPLPREATVDDDTAPAXXXXXXXXXXG------LASASEGANGRGD-----GVDGGGSDS---FVDRLIALAGAPGQLRAEALGLLTRIGRSYPAHLSGGCTARGTVAE---KTTA---------------------------------------TTWERVSALLLRCFADPDQNLRLHALKVLEALLLARAEQAAAAAEALPVAGEKSSGTAGXXXXAAESVSPKQKPRSETXXXXXXXXXXXXXXXXXXXXXXGGKVWRDLVQKHLQRALEDPYHGVRAVACSCHASLLKSDWEAFSDRERERCLGRVLAATRDRAAGVNILACRVVAGVMTMAGQEGAAAWCRDPEFLHRCAARLQEMMEDTK--------------------------------------PXXXXXXXEGTRDCQVSPAAGTGAGTGDLIPRPRLRSLCDGALRLTATEPDHAAGSAVRALGYLAWGLDPDNFGGGGDGWGGKDGVVKARERDNESAV---PLLPVGGDEDDAVASGRTVEAAAAAAVGRPVQERGGEGFGESGEEDGGDRDLQDKAILALSTRL-APDKGDRELGNYGAGXXXXXXXX-------------DRRAEIAGAKCRSEPLLVELLHRPWDCPVREGGASEGREGPVGARAHAVLREAR--AVLDDNHLKVRTHAAHALKAVLDARAYGDQLPSILGGCLRGLAACKSRSVVADPTQMRYAGDLEVALRSLVLHILIALV 1350
BLAST of mRNA_H-paniculata_contig7982.16000.1 vs. uniprot
Match: A0A6H5K415_9PHAE (DUF4042 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K415_9PHAE) HSP 1 Score: 665 bits (1715), Expect = 1.770e-208 Identity = 606/1561 (38.82%), Postives = 733/1561 (46.96%), Query Frame = 1
Query: 103 AIPPSSDKLMTRVAQFYLSLCGSQQKVTFLTWQLDILLDCLLGPLASMTKDKNSLPAAASWPLSXXXXXXXXXXXS---GRECVRALAQLLYENGERLGTRFGDILPRLLCLADPFAVDIKTRHTALDAVGNLCLKNWAGFTEAQRADVCSCLTRNFDAHWRALSFTATTAATTVSSASGASCTTLGSPYPLFAAALLPTERKVVASAARGLACAVGKIGVSAVLEP-----------------------ATAASAAARGSRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXLS----PTRTGSRPALPDPRARVRLHVLVLLEAIAVKEAKVLYPHWALF--------LGGGGVGTGEGDLGYTFGHGSP---STGSPVLPAGLVNIMEYDKAPQIRAAAAXXXAALVKNAPLRMWMPLAARGEGAGVGRSIGGIEQRVASMMYQLQMTLVSCLAREESPAVLAKVCACSGALVSEMPYEVGMIAAGENVRTDGR------------------------SDFEELLGGLLAALTTLMLDGSVEPSARIA---------------------------------------------ASQALTAAFSTKEPLTAVDVFLWTFRAD-----PSRGSVTWRSSN-TPSTRIPTTAAIH----DARLGP----PIPSCPGSADDRNNRFAERIGYRRSPTFIPTRPVGA------------------------------------GADAGEECVARAGSGPPNMRVWRRTSPAKINGANASSVRSPATPRT---------------PSSSGAA---RGLGDCRTDSGECGAGDPDEGFLVDRLIAMANTPGQLRAEALCLLTRIGRSYPSHVCGE-SVTGEITEEVKKVTAGDDEDDHGHDGENGSXXXXXXXXXXXXXXXXXXXXXXXXRTWENVSGLLLRCFADPDQNLRLHALKVLEAFLLARSEQA------------ATAVVGMETNNEKESNGRVQAAAEDK------APASACGVAVRSAGG----------------------------GVXXXXGS-------------LWGDLVQKHLQRALEDPYHGVRAVACACHGCLLDSDWEAFADDERDQCLDRLLAATRDRAAGVSVLACRVFAGLMTTAGKPDVAEWCRRPVFLGRCAARLGEMMNDSKATIRAQATLAVGNLSCSLHAMRSRSTRASI-------LTAPTAALPDPSNSNLSHDNISQISTSRSLGP---EPVERPQLRSLCEGALRLAKSEPDHSAASAARALGYLAWNLDTSSDGGSNSDR--RTEFFEDTNRTGIATTPALPSGGQPAETVS---RYRPHAMAITTMVPKAKTLEGNEDAVGDREDWNLQDAAVLTLAARTNAVEEAAAGLANAGVGERGGEIVVGQGRAARSGESVKDRKADTTAAKCRRGVT-SVELLHRSRNYPLRAWVA--SAVAACALGRDASAVPPQVTIMAMEDDRHLKVRTHAAVALRAVPSTLAYGDDLPAIFGGALRLLLACGKGIVVSDPTQIRYADPLEPALRALVLHMFLLLV 4017
++ P+++ R L LC +QQ+VTFL WQL+I+LD + L + + P P R+C RALAQLLYENGERLGTRF D++P LL LADP A+D+ TRH ALDA+ NLCLKNWAGF E QR CSCLTRNF A+WRA + + S P ERK++ASA RGLACA+GK GVS VLEP A +AA RG+ XXXXXXXXXXXXXXXXXX XXXXXXXX PTR+ + +L DPRARVRL L LLE++A K+AK +YPHWALF + GGG ST VLPAGLV+IME D APQ+RAAA XXX GI +RV SMM +L +LV CLA+E+SPAV+AK+C+C+GAL++EMPY A+G S EE LG LL L LM+D + EPSARIA +SQALTA FSTKEP+ A+D FL +FR PS +W S TP + P +AA +A GP P+P PGSADDR NRF + GAD G AR G +R R GA AS P PR P+ +G A G D R D G+ G GD VDRLIA+A PGQLRAEAL LLTRIGRSYP+H+ G S G + E T WE VS LLLRCFADPDQNLRLHALKVLEA LLAR+EQ A +V G + + K A+A G++ G GV G+ +W DLVQKHLQRALEDPYHGVRAVAC+CH LL SDWEAF+D ERD+CL R+LAATRDRAAGV++LACRV AG+MT AG+ A WCR P FL RCAARL EMM D+KA LAVGNLSCSLH +RSR R S+ Q+S + G + + RP+LRSLC+GALRLA +EP+H+A SA RALGYLAW LD + GG R + E R + LP G + ++ AMA V + E D D +LQD A+LTL+ R ++ L N G GG G G DR+A+ AKCR ++ ++ +R RA A + V +LGR A+ DD HLKVRTHAA AL+AV AYGD LP+I GG LR L AC +V+D TQ+RYA LE ALR+LVLH+ + LV
Sbjct: 2 SLAPATNPRRRRPRARSLQLCANQQRVTFLAWQLNIVLDLFVACLPTADAEVQVAPPRPPAPAEENLPPPLRPPRPLSFQRDCTRALAQLLYENGERLGTRFDDVVPPLLRLADPSAIDLDTRHAALDALANLCLKNWAGFAEPQRQMTCSCLTRNFVANWRAFASS--------SXXXXXXXXXXXXXXXXXXXXXXPGERKILASATRGLACAIGKAGVSPVLEPYLARVVHALNHLVQPAGEGERSGAATTAAATRGASGXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXPTRSSASASLVDPRARVRLQALALLESMAAKDAKSMYPHWALFFAPCVPGAVSGGGXXXXXXXXXXXXXXXXXXXXSTRPVVLPAGLVSIMESDLAPQVRAAAXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXGIGERVESMMLRLHRSLVLCLAQEKSPAVVAKLCSCTGALIAEMPYATSQAASGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGVEESLGDLLRELARLMVDVAAEPSARIAGASFFHDXXXXXXXXXNLLYFCLALLCSVLVQSWPLDRASYRSVSSSQALTAVFSTKEPVAAIDSFLLSFRCSAAGGLPSSCGGSWGGSRATPPSSSPASAARRGNGANAVAGPGAWSPLPLRPGSADDRGNRFVGGVARNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRGADVGGR--ARGG-----LRASDR------RGARASDQMPPPLPRESTVDDDTAPAAAXXXPAPAGLAAPSEGAND-RGDDGDGGGGDS----FVDRLIALAGAPGQLRAEALGLLTRIGRSYPAHLSGGCSARGAVAETTTATT------------------------------------------WERVSALLLRCFADPDQNLRLHALKVLEALLLARAEQXXXXXXXXXXXAEALSVAGENFSGTAGGXXXXXXSVSPKQNPLSETAAAAGGLSAEGVEGAGLSQGTPISNVAEXXXXXXXXXXXERRGVVGSSGTAAXXXXXXXXXXKVWRDLVQKHLQRALEDPYHGVRAVACSCHASLLKSDWEAFSDPERDRCLGRVLAATRDRAAGVNILACRVVAGVMTMAGEEGAAAWCRDPEFLDRCAARLQEMMEDTKAM------LAVGNLSCSLHGIRSR--RRSLPXXXXXXXXXXXXXXXXXXXXXXEGTRDCQVSPAAGTGAGTGDLLPRPRLRSLCDGALRLAATEPNHAAGSAVRALGYLAWGLDPENFGGGADGRGGKNGVVEARARDNESAASLLPVEGDEVDVIAIGPTVEAAAMAGRRPVQERGGDGFGESGEEDGGDRDLQDKAILTLSTRLAPDKKGDLELRNCGAWGEGGS---GGG----------DRRAEIAGAKCRWNCCIALGVVLSARGVQARAARAQWAPVLMQSLGR------------AVLDDNHLKVRTHAAHALKAVLDARAYGDQLPSILGGCLRGLDACKNRSIVADSTQMRYAGDLEVALRSLVLHILIALV 1460
BLAST of mRNA_H-paniculata_contig7982.16000.1 vs. uniprot
Match: W7TRQ9_9STRA (Armadillo-like helical n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRQ9_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 8.740e-5 Identity = 42/120 (35.00%), Postives = 52/120 (43.33%), Query Frame = 1
Query: 2362 LLLRCFADPDQNLRLHALKVLEAFLLARSEQAATAVVGMETNNEKESNGRVQAAAEDKAPASACGVAVRSAGGGVXXXXGSL--WGDLVQKHLQRALEDPYHGVRAVACACHGCLLDSDW 2715
+LL F DQN+RLHALKV+E L R + + G +E G G G GSL W + +H++ A DPYHGVRAVACAC DW
Sbjct: 52 VLLGNFGGGDQNIRLHALKVVEELLQWRKHKKTEDIAGQ---GRREGTG----------------------GKGKRREEGSLEGWVFFLMRHVRHAFYDPYHGVRAVACACLSHFEAKDW 146 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7982.16000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7982.16000.1 >prot_H-paniculata_contig7982.16000.1 ID=prot_H-paniculata_contig7982.16000.1|Name=mRNA_H-paniculata_contig7982.16000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1339bp MTRPDAAVLCTHTFPRFTLSSPQDAGLMMAVLCEAIPPSSDKLMTRVAQFback to top mRNA from alignment at H-paniculata_contig7982:2592..10579+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7982.16000.1 ID=mRNA_H-paniculata_contig7982.16000.1|Name=mRNA_H-paniculata_contig7982.16000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7988bp|location=Sequence derived from alignment at H-paniculata_contig7982:2592..10579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7982:2592..10579+ >mRNA_H-paniculata_contig7982.16000.1 ID=mRNA_H-paniculata_contig7982.16000.1|Name=mRNA_H-paniculata_contig7982.16000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8034bp|location=Sequence derived from alignment at H-paniculata_contig7982:2592..10579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |