mRNA_H-paniculata_contig79740.15996.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig79740.15996.1
Unique NamemRNA_H-paniculata_contig79740.15996.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig79740.15996.1 vs. uniprot
Match: A0A2R4QQ52_9PHAE (30S ribosomal protein S8 n=4 Tax=Phaeophyceae TaxID=2870 RepID=A0A2R4QQ52_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 7.730e-45
Identity = 69/74 (93.24%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 LLLCLKYHTQKRQPIITGIKRISKPGLRIYVNKNNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 222
            LLLCLKYH+QKRQPIITGIKRISKPGLRIYVNKNNLPN+LNNLG+AILSTSKGILTNNKAKKLG+GGE+ICYIW
Sbjct:   55 LLLCLKYHSQKRQPIITGIKRISKPGLRIYVNKNNLPNILNNLGVAILSTSKGILTNNKAKKLGIGGEVICYIW 128
[Close]
BLAST of mRNA_H-paniculata_contig79740.15996.1 vs. uniprot
Match: A0A1I9LVH6_9PHAE (30S ribosomal protein S8, chloroplastic n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVH6_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.510e-44
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:    1 LLLCLKYHTQKRQPIITGIKRISKPGLRIYVNKNNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 222
            LLLCLKYH QKRQPIITGIKRISKPGLRIYVNK+NLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW
Sbjct:   59 LLLCLKYHIQKRQPIITGIKRISKPGLRIYVNKSNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 132
[Close]
BLAST of mRNA_H-paniculata_contig79740.15996.1 vs. uniprot
Match: A0A6B9TPR3_SARFS (30S ribosomal protein S8, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TPR3_SARFS)

HSP 1 Score: 141 bits (356), Expect = 6.860e-42
Identity = 64/74 (86.49%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:    1 LLLCLKYHTQKRQPIITGIKRISKPGLRIYVNKNNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 222
            LLLCLKYH QKR+PIITGIKRISKPGLR+YVNK+NLPN+LNNLGIAILSTSKGI+TN+KA+KLG+GGE+ICYIW
Sbjct:   59 LLLCLKYHNQKREPIITGIKRISKPGLRVYVNKSNLPNILNNLGIAILSTSKGIITNHKARKLGIGGEVICYIW 132
[Close]
BLAST of mRNA_H-paniculata_contig79740.15996.1 vs. uniprot
Match: A0A2I4Q355_9PHAE (30S ribosomal protein S8, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q355_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 3.250e-40
Identity = 65/74 (87.84%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:    1 LLLCLKYHTQKRQPIITGIKRISKPGLRIYVNKNNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 222
            LLL LKY+ QKRQPIITG+KR+SKPGLRIYVNKNNLP V+NNLGIAILSTSKGILTNNKAKKLGVGGE++CYIW
Sbjct:   59 LLLSLKYYNQKRQPIITGLKRVSKPGLRIYVNKNNLPIVINNLGIAILSTSKGILTNNKAKKLGVGGEVLCYIW 132
[Close]
BLAST of mRNA_H-paniculata_contig79740.15996.1 vs. uniprot
Match: A0A8F0F790_9PHAE (Ribosomal protein S8 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F790_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.360e-39
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 LLLCLKYHTQKRQPIITGIKRISKPGLRIYVNKNNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 222
            LLLCLKYH++KRQPIIT +KRISKPGLRIYV+  NLP V+NNLGIAI+STSKGILTNNKAKKLGVGGE+ICYIW
Sbjct:   59 LLLCLKYHSKKRQPIITELKRISKPGLRIYVSNKNLPTVVNNLGIAIMSTSKGILTNNKAKKLGVGGEVICYIW 132
[Close]
BLAST of mRNA_H-paniculata_contig79740.15996.1 vs. uniprot
Match: A0A7S6ZPB1_9STRA (30S ribosomal protein S8, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPB1_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.790e-37
Identity = 60/74 (81.08%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 LLLCLKYHTQKRQPIITGIKRISKPGLRIYVNKNNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 222
            LLLCLKYH Q RQPII+ IKRISKPGLRIYV+K NLPNVL+NLGIAI+STSKG++TN+KA++LGVGGE+ICYIW
Sbjct:   59 LLLCLKYHGQNRQPIISAIKRISKPGLRIYVDKKNLPNVLSNLGIAIISTSKGVMTNHKARELGVGGEVICYIW 132
[Close]
BLAST of mRNA_H-paniculata_contig79740.15996.1 vs. uniprot
Match: A0A8E6D514_9PHAE (30S ribosomal protein S8, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D514_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.980e-33
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 LLLCLKYHTQKRQPIITGIKRISKPGLRIYVNKNNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 222
            LLLCLKY+   R P I GIKRISKPGLRIYV+ +NLP VL+NLGIAILSTSKGILTN  AKKLG+GGE+ICYIW
Sbjct:   54 LLLCLKYYGYNRSPTIKGIKRISKPGLRIYVSGDNLPKVLSNLGIAILSTSKGILTNYSAKKLGIGGEVICYIW 127
[Close]
BLAST of mRNA_H-paniculata_contig79740.15996.1 vs. uniprot
Match: B7T1X1_VAULI (30S ribosomal protein S8, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1X1_VAULI)

HSP 1 Score: 117 bits (293), Expect = 2.660e-32
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 LLLCLKYHTQKRQPIITGIKRISKPGLRIYVNKNNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 222
            LLLCLKY+  KR+PI+T + RISKPGLRIYVN  N+P VL NLGIAI+STSKG++TN+ AK LG+GGE+ICYIW
Sbjct:   59 LLLCLKYNGSKRKPILTTVVRISKPGLRIYVNHKNIPQVLGNLGIAIISTSKGVITNHTAKNLGIGGEVICYIW 132
[Close]
BLAST of mRNA_H-paniculata_contig79740.15996.1 vs. uniprot
Match: A0A8K1YHB5_9STRA (Ribosomal protein S8 n=1 Tax=Thalassiosira sp. TaxID=1891026 RepID=A0A8K1YHB5_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.090e-31
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:    1 LLLCLKYHTQKRQPIITGIKRISKPGLRIYVNKNNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 222
            LLL LKY  Q R+ +I  IKR+SKPGLRIYVN   LPNVLN LGIAILSTSKGI+TN KAK+LG+GGE++CYIW
Sbjct:   59 LLLSLKYKGQSRERVINKIKRVSKPGLRIYVNSQKLPNVLNGLGIAILSTSKGIMTNTKAKELGIGGEVLCYIW 132
[Close]
BLAST of mRNA_H-paniculata_contig79740.15996.1 vs. uniprot
Match: A0A1D8DB85_9STRA (30S ribosomal protein S8, chloroplastic n=1 Tax=Toxarium undulatum TaxID=210620 RepID=A0A1D8DB85_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.150e-30
Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    1 LLLCLKYHTQKRQPIITGIKRISKPGLRIYVNKNNLPNVLNNLGIAILSTSKGILTNNKAKKLGVGGEIICYIW 222
            +L+CLKY  + R+P+I+ IKRIS+PGLRIY N  NLP VLNNLGIAI+STS G++TN KAK+LG+GGEI+CYIW
Sbjct:   56 ILVCLKYSGKVRKPVISNIKRISRPGLRIYTNSKNLPKVLNNLGIAIVSTSHGVMTNLKAKELGLGGEILCYIW 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig79740.15996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ52_9PHAE7.730e-4593.2430S ribosomal protein S8 n=4 Tax=Phaeophyceae TaxI... [more]
A0A1I9LVH6_9PHAE2.510e-4497.3030S ribosomal protein S8, chloroplastic n=33 Tax=P... [more]
A0A6B9TPR3_SARFS6.860e-4286.4930S ribosomal protein S8, chloroplastic n=14 Tax=S... [more]
A0A2I4Q355_9PHAE3.250e-4087.8430S ribosomal protein S8, chloroplastic n=1 Tax=Di... [more]
A0A8F0F790_9PHAE5.360e-3985.14Ribosomal protein S8 n=1 Tax=Protohalopteris sp. T... [more]
A0A7S6ZPB1_9STRA1.790e-3781.0830S ribosomal protein S8, chloroplastic n=1 Tax=Sc... [more]
A0A8E6D514_9PHAE1.980e-3378.3830S ribosomal protein S8, chloroplastic n=1 Tax=Is... [more]
B7T1X1_VAULI2.660e-3271.6230S ribosomal protein S8, chloroplastic n=1 Tax=Va... [more]
A0A8K1YHB5_9STRA3.090e-3172.97Ribosomal protein S8 n=1 Tax=Thalassiosira sp. Tax... [more]
A0A1D8DB85_9STRA1.150e-3068.9230S ribosomal protein S8, chloroplastic n=1 Tax=To... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig79740contigH-paniculata_contig79740:318..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue8.5e-34
Seed eggNOG ortholog2880.D1J739
Preferred namerps8
KEGG koko:K02994
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0015935,GO:0016020,GO:0022626,GO:0022627,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0096@1,KOG1754@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930995.0541184-CDS-H-paniculata_contig79740:317..5421622930995.0541184-CDS-H-paniculata_contig79740:317..542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig79740 318..542 -
1691481542.7742856-CDS-H-paniculata_contig79740:317..5421691481542.7742856-CDS-H-paniculata_contig79740:317..542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig79740 318..542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig79740.15996.1prot_H-paniculata_contig79740.15996.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig79740 318..542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig79740.15996.1

>prot_H-paniculata_contig79740.15996.1 ID=prot_H-paniculata_contig79740.15996.1|Name=mRNA_H-paniculata_contig79740.15996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
LLLCLKYHTQKRQPIITGIKRISKPGLRIYVNKNNLPNVLNNLGIAILST
SKGILTNNKAKKLGVGGEIICYIW*
back to top

mRNA from alignment at H-paniculata_contig79740:318..542-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig79740.15996.1 ID=mRNA_H-paniculata_contig79740.15996.1|Name=mRNA_H-paniculata_contig79740.15996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig79740:318..542- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATTACTTTGTTTAAAATACCATACGCAAAAACGACAACCTATTATTAC
AGGGATTAAAAGAATAAGTAAACCAGGTTTAAGAATTTATGTAAATAAAA
ATAATTTACCCAATGTTTTAAATAATTTAGGGATAGCAATACTATCAACA
TCAAAAGGTATTTTAACTAATAATAAGGCGAAAAAATTAGGCGTTGGTGG
TGAAATTATTTGTTATATTTGGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig79740:318..542-

>mRNA_H-paniculata_contig79740.15996.1 ID=mRNA_H-paniculata_contig79740.15996.1|Name=mRNA_H-paniculata_contig79740.15996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig79740:318..542- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATTACTTTGTTTAAAATACCATACGCAAAAACGACAACCTATTATTAC
AGGGATTAAAAGAATAAGTAAACCAGGTTTAAGAATTTATGTAAATAAAA
ATAATTTACCCAATGTTTTAAATAATTTAGGGATAGCAATACTATCAACA
TCAAAAGGTATTTTAACTAATAATAAGGCGAAAAAATTAGGCGTTGGTGG
TGAAATTATTTGTTATATTTGGTAATTATTACTTTGTTTAAAATACCATA
CGCAAAAACGACAACCTATTATTACAGGGATTAAAAGAATAAGTAAACCA
GGTTTAAGAATTTATGTAAATAAAAATAATTTACCCAATGTTTTAAATAA
TTTAGGGATAGCAATACTATCAACATCAAAAGGTATTTTAACTAATAATA
AGGCGAAAAAATTAGGCGTTGGTGGTGAAATTATTTGTTATATTTGGTAA
back to top