mRNA_H-paniculata_contig79354.15964.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig79354.15964.1
Unique NamemRNA_H-paniculata_contig79354.15964.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig79354.15964.1 vs. uniprot
Match: A0A1E1IXG3_LEIGU (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Viannia TaxID=37616 RepID=A0A1E1IXG3_LEIGU)

HSP 1 Score: 58.2 bits (139), Expect = 1.630e-8
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 ICKDTIIKTKLEWEQEHRSGLGPGMKNLRNTCFINSFLQGLAHIPSVAQYFMD 159
            +C D  +++ L    ++ + +G G+ NL NTCF NS LQ LAHIP++AQYFM+
Sbjct:   97 LCSDAQLRSSLYLRWQNITPVGLGLMNLGNTCFANSVLQALAHIPALAQYFMN 149
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BLAST of mRNA_H-paniculata_contig79354.15964.1 vs. uniprot
Match: A0A6H5JJN5_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.170e-8
Identity = 24/50 (48.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   10 DTIIKTKLEWEQEHRSGLGPGMKNLRNTCFINSFLQGLAHIPSVAQYFMD 159
            D+ IK  L+W+Q HR  +GPG++NL NTCF+N+ LQ L+++P +AQ+ ++
Sbjct:  250 DSKIKACLQWKQVHR--MGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLN 297
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BLAST of mRNA_H-paniculata_contig79354.15964.1 vs. uniprot
Match: A0A7M7GC60_NASVI (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Pteromalinae TaxID=272242 RepID=A0A7M7GC60_NASVI)

HSP 1 Score: 48.5 bits (114), Expect = 4.110e-5
Identity = 18/46 (39.13%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:   22 KTKLEWEQEHRSGLGPGMKNLRNTCFINSFLQGLAHIPSVAQYFMD 159
            K  L W++ H   +G GM N+ NTC++NS LQ L H+P++  + + 
Sbjct:  110 KVNLGWDKTHNMPVGAGMYNVGNTCYLNSTLQALFHVPALVNWLLS 155
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BLAST of mRNA_H-paniculata_contig79354.15964.1 vs. uniprot
Match: A0A8C4QXI4_EPTBU (Ubiquitin specific peptidase 42 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4QXI4_EPTBU)

HSP 1 Score: 48.5 bits (114), Expect = 4.110e-5
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   22 KTKLEWEQEHRSGLGPGMKNLRNTCFINSFLQGLAHIPSVAQYFMD 159
            K +L+WE+E   G+G G+ NL NTCF+NS LQ L + P +A Y + 
Sbjct:   26 KLRLKWERER--GVGAGLYNLGNTCFLNSTLQCLTYTPPLANYLLS 69
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BLAST of mRNA_H-paniculata_contig79354.15964.1 vs. uniprot
Match: A0A672URC5_STRHB (USP domain-containing protein n=1 Tax=Strigops habroptila TaxID=2489341 RepID=A0A672URC5_STRHB)

HSP 1 Score: 48.1 bits (113), Expect = 4.870e-5
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   16 IIKTKLEWEQEHRSGLGPGMKNLRNTCFINSFLQGLAHIPSVAQYFMD 159
            + +  L+WE+ HR  +G G++NL NTCF+NS +Q L + P +A Y + 
Sbjct:   83 VERLSLKWEKVHR--IGAGLRNLGNTCFLNSTVQCLTYTPPLANYLLS 128
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BLAST of mRNA_H-paniculata_contig79354.15964.1 vs. uniprot
Match: A0A672URD1_STRHB (USP domain-containing protein n=1 Tax=Strigops habroptila TaxID=2489341 RepID=A0A672URD1_STRHB)

HSP 1 Score: 48.1 bits (113), Expect = 4.920e-5
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   16 IIKTKLEWEQEHRSGLGPGMKNLRNTCFINSFLQGLAHIPSVAQYFMD 159
            + +  L+WE+ HR  +G G++NL NTCF+NS +Q L + P +A Y + 
Sbjct:   87 VERLSLKWEKVHR--IGAGLRNLGNTCFLNSTVQCLTYTPPLANYLLS 132
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BLAST of mRNA_H-paniculata_contig79354.15964.1 vs. uniprot
Match: A0A672UQQ1_STRHB (USP domain-containing protein n=1 Tax=Strigops habroptila TaxID=2489341 RepID=A0A672UQQ1_STRHB)

HSP 1 Score: 48.1 bits (113), Expect = 4.940e-5
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   16 IIKTKLEWEQEHRSGLGPGMKNLRNTCFINSFLQGLAHIPSVAQYFMD 159
            + +  L+WE+ HR  +G G++NL NTCF+NS +Q L + P +A Y + 
Sbjct:   88 VERLSLKWEKVHR--IGAGLRNLGNTCFLNSTVQCLTYTPPLANYLLS 133
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BLAST of mRNA_H-paniculata_contig79354.15964.1 vs. uniprot
Match: A0A1Y1Z831_9FUNG (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z831_9FUNG)

HSP 1 Score: 48.1 bits (113), Expect = 5.590e-5
Identity = 22/49 (44.90%), Postives = 29/49 (59.18%), Query Frame = 1 
Query:   13 TIIKTKLEWEQEHRSGLGPGMKNLRNTCFINSFLQGLAHIPSVAQYFMD 159
            TI K +L        G+GPG+ NL NTCF+NS LQ L + P +A Y  +
Sbjct:   53 TIFKKELSQTWGKEFGVGPGLNNLGNTCFMNSVLQCLTYTPPLASYLFN 101
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BLAST of mRNA_H-paniculata_contig79354.15964.1 vs. uniprot
Match: UPI0011CF13F3 (ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=Strigops habroptila TaxID=2489341 RepID=UPI0011CF13F3)

HSP 1 Score: 48.1 bits (113), Expect = 5.620e-5
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   16 IIKTKLEWEQEHRSGLGPGMKNLRNTCFINSFLQGLAHIPSVAQYFMD 159
            + +  L+WE+ HR  +G G++NL NTCF+NS +Q L + P +A Y + 
Sbjct:  102 VERLSLKWEKVHR--IGAGLRNLGNTCFLNSTVQCLTYTPPLANYLLS 147
[Close]
BLAST of mRNA_H-paniculata_contig79354.15964.1 vs. uniprot
Match: UPI0011CF1D16 (ubiquitin carboxyl-terminal hydrolase 36-like isoform X1 n=2 Tax=Strigops habroptila TaxID=2489341 RepID=UPI0011CF1D16)

HSP 1 Score: 48.1 bits (113), Expect = 5.630e-5
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   16 IIKTKLEWEQEHRSGLGPGMKNLRNTCFINSFLQGLAHIPSVAQYFMD 159
            + +  L+WE+ HR  +G G++NL NTCF+NS +Q L + P +A Y + 
Sbjct:  132 VERLSLKWEKVHR--IGAGLRNLGNTCFLNSTVQCLTYTPPLANYLLS 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig79354.15964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1E1IXG3_LEIGU1.630e-847.17Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Vian... [more]
A0A6H5JJN5_9PHAE4.170e-848.00USP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7M7GC60_NASVI4.110e-539.13Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Pter... [more]
A0A8C4QXI4_EPTBU4.110e-547.83Ubiquitin specific peptidase 42 n=1 Tax=Eptatretus... [more]
A0A672URC5_STRHB4.870e-541.67USP domain-containing protein n=1 Tax=Strigops hab... [more]
A0A672URD1_STRHB4.920e-541.67USP domain-containing protein n=1 Tax=Strigops hab... [more]
A0A672UQQ1_STRHB4.940e-541.67USP domain-containing protein n=1 Tax=Strigops hab... [more]
A0A1Y1Z831_9FUNG5.590e-544.90Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Basi... [more]
UPI0011CF13F35.620e-541.67ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=S... [more]
UPI0011CF1D165.630e-541.67ubiquitin carboxyl-terminal hydrolase 36-like isof... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig79354contigH-paniculata_contig79354:338..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930989.8872473-CDS-H-paniculata_contig79354:337..4961622930989.8872473-CDS-H-paniculata_contig79354:337..496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig79354 338..496 +
1691481540.7494788-CDS-H-paniculata_contig79354:337..4961691481540.7494788-CDS-H-paniculata_contig79354:337..496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig79354 338..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig79354.15964.1prot_H-paniculata_contig79354.15964.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig79354 338..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig79354.15964.1

>prot_H-paniculata_contig79354.15964.1 ID=prot_H-paniculata_contig79354.15964.1|Name=mRNA_H-paniculata_contig79354.15964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
ICKDTIIKTKLEWEQEHRSGLGPGMKNLRNTCFINSFLQGLAHIPSVAQY
FMD
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mRNA from alignment at H-paniculata_contig79354:338..496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig79354.15964.1 ID=mRNA_H-paniculata_contig79354.15964.1|Name=mRNA_H-paniculata_contig79354.15964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig79354:338..496+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATGTAAGGATACCATCATCAAGACAAAGCTGGAGTGGGAACAGGAGCA
CCGTTCTGGGTTAGGGCCGGGGATGAAGAACCTGAGAAATACATGTTTCA
TCAATTCTTTCCTACAGGGCCTGGCGCACATTCCTTCTGTTGCTCAGTAT
TTCATGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig79354:338..496+

>mRNA_H-paniculata_contig79354.15964.1 ID=mRNA_H-paniculata_contig79354.15964.1|Name=mRNA_H-paniculata_contig79354.15964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig79354:338..496+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATGTAAGGATACCATCATCAAGACAAAGCTGGAGTGGGAACAGGAGCA
CCGTTCTGGGTTAGGGCCGGGGATGAAGAACCTGAGAAATACATGTTTCA
TCAATTCTTTCCTACAGGGCCTGGCGCACATTCCTTCTGTTGCTCAGTAT
TTCATGGACATATGTAAGGATACCATCATCAAGACAAAGCTGGAGTGGGA
ACAGGAGCACCGTTCTGGGTTAGGGCCGGGGATGAAGAACCTGAGAAATA
CATGTTTCATCAATTCTTTCCTACAGGGCCTGGCGCACATTCCTTCTGTT
GCTCAGTATTTCATGGAC
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