mRNA_H-paniculata_contig7911.15939.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7911.15939.1
Unique NamemRNA_H-paniculata_contig7911.15939.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 3.700e-33
Identity = 94/286 (32.87%), Postives = 148/286 (51.75%), Query Frame = 1
Query:    1 MDFSTAFLNGKLGENVYMQQAPGFKVKDSRGDRSS*SCANQSMAFVSLRRRG----IEPSIQILGTLDSSLQ*ATVRQRWQG-RLH---HVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELT-VKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFL 831
            MD STAFL   + E V+++Q PGF+VKD           N+S+  ++         I+P I  +G +              G +++   +V D+        A     S+V+  L  +F M D G+ + +LG++I +D+E  T+++S      S+ ++F M  S P  TPG G E++ ++PE + LLDE   R YQ IVGSL+++ Q  R DI +   Q AR M  P+ VHM + K  LRYL G  +  ++Y     F+L  F D++++N NP+   STS  +  L
Sbjct:   29 MDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDA----ISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK-KGGFKLATFSDSNWAN-NPDNGKSTSSYLTML 307          
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 131 bits (329), Expect = 2.850e-31
Identity = 94/297 (31.65%), Postives = 149/297 (50.17%), Query Frame = 1
Query:    1 MDFSTAFLNGKLGENVYMQQAPGF----------KVKDS-RGDRSS*SCAN----QSMAFVSLRRRGIEPSIQILGTLDSSLQ*ATVRQRWQGRLHHVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFLFGGVV 846
            MD  TAFLNG L E +YM+Q  G+          K+K S  G + S  C +    +SM  +   +   +P + +             RQ  +    +V D+   +   ++     + ++  L  K+ M D G+++ ILGI + QDK   ++ +   H + ++ +K+ MD +NPV TP        K +G  + +      YQ+IVGSL++   +TR DIA  VS  ++F   P + HM +VKRILRYL G  NL L Y    +  L GF DA ++    ++R ST+G+++ L GG V
Sbjct:  108 MDVVTAFLNGHLEEEIYMEQPDGYIKPGQEHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFV-----------RARQELEILAVYVDDLILITESLESM----TELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDG--VSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQRSESETLLGFSDADWAGDQDDRR-STTGNIFLLGGGAV 386          
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6G0J2S8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0J2S8_LARCR)

HSP 1 Score: 131 bits (329), Expect = 4.730e-31
Identity = 94/297 (31.65%), Postives = 149/297 (50.17%), Query Frame = 1
Query:    1 MDFSTAFLNGKLGENVYMQQAPGF----------KVKDS-RGDRSS*SCAN----QSMAFVSLRRRGIEPSIQILGTLDSSLQ*ATVRQRWQGRLHHVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFLFGGVV 846
            MD  TAFLNG L E +YM+Q  G+          K+K S  G + S  C +    +SM  +   +   +P + +             RQ  +    +V D+   +   ++     + ++  L  K+ M D G+++ ILGI + QDK   ++ +   H + ++ +K+ MD +NPV TP        K +G  + +      YQ+IVGSL++   +TR DIA  VS  ++F   P + HM +VKRILRYL G  NL L Y    +  L GF DA ++    ++R ST+G+++ L GG V
Sbjct:  247 MDVVTAFLNGHLEEEIYMEQPDGYIKPGQEHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFV-----------RARQELEILAVYVDDLILITESLESM----TELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDG--VSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQRSESETLLGFSDADWAGDQDDRR-STTGNIFLLGGGAV 525          
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.740e-30
Identity = 93/289 (32.18%), Postives = 149/289 (51.56%), Query Frame = 1
Query:    1 MDFSTAFLNGKLGENVYMQQAPGFKVKDSRG-------DRSS*SCANQSMAFVSLRRRGIEPSIQILGTLDSSLQ*ATVRQRWQG-RLH---HVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELT-VKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFL 831
            MD STAFL   + E V+++Q PGF+VKD  G       ++S    A     + +     I+P +  +G +              G +++   +V D+        A     S+V+  L  +F M D G+ + +LG++I +D+E  T+++S      S+ ++F +  S P  TPG G E++ ++PE + LLDE   R YQ IVGSL+++ Q  R DI +   Q AR M  P+ VHM + K  LRYL G  +  ++Y     F+L  F D++++N NP+   STS  +  L
Sbjct: 1259 MDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNT----IDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDA----ISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK-KGGFKLATFSDSNWAN-NPDNGKSTSSYLTVL 1536          
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 123 bits (309), Expect = 4.640e-28
Identity = 102/299 (34.11%), Postives = 142/299 (47.49%), Query Frame = 1
Query:    1 MDFSTAFLNGKLGENVYMQQAPGFKVKDSR-----------GDRSS*SCANQSMAFVSLRRRGIEPSIQILGTLDSSLQ*ATVRQRWQGRLHHVYDISRRSAHHQAQ*FGCS-----LVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTP-GTGMELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFLFGGVV 846
            MD  TAFLNG+L E VYMQQ  GF VK              G + S  C N  +    L++ G    +Q  G  D  +  A   + +   + +V DI            GCS      V+  L   F + D G++   LG+ I Q  E G I +       ++ KKF M++S PV TP     +L    + S ++D    + +Q+ VGSL++L   TR DIA+ V+  ARF   PT  H  +VKRI+RYL G  NL L Y+ D   E  GF DA ++  +   R S SG M+ + G  V
Sbjct:  347 MDVKTAFLNGELKEEVYMQQPEGFVVKGKEHLVCKLNRSIYGLKQSPRCWN-IVLDEQLKKMGF---VQTTG--DPCIYTAATGEMFIIAV-YVDDILLA---------GCSDKRMMEVKKMLAKHFEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKFGMENSKPVSTPVDINTKLVKHSDDSEVMDP---KQFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLYNKDKPKECIGFSDADWAG-DQNDRKSMSGYMFQISGAAV 625          
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 5.480e-28
Identity = 92/304 (30.26%), Postives = 144/304 (47.37%), Query Frame = 1
Query:    1 MDFSTAFLNGKLGENVYMQQAPGFKVKDSRG-------DRSS*SCANQ-------------SMAFVSLRRRGIEPSIQILGT------LDSSLQ*ATVRQRWQGRLHHVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELT-VKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFL 831
            MD STAFL   + E V+++Q PGF+VKD  G       ++S    A                + FV+L+    +P + +         L   +    +       + H+     +         G +     L  +F M D G+ +  LG+ I +D+E  T+++S      S+ ++F M  S P  TPG G E++ ++PE + LLDE   R YQ IVGSL+++ Q  R DI +   Q AR M  P+ VHM + K  LRYL G  +  ++Y     F+L  F D++++N NP+   STS  +  L
Sbjct:  238 MDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKS---DPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLG-------GIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYK-KGGFKLATFSDSNWAN-NPDNGKSTSSYLTML 528          
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A0J7NHJ8_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NHJ8_LASNI)

HSP 1 Score: 122 bits (306), Expect = 1.360e-27
Identity = 85/293 (29.01%), Postives = 148/293 (50.51%), Query Frame = 1
Query:    1 MDFSTAFLNGKLGENVYMQQAPGFKVKDSRGDRSS*SCANQSMAFVSLR----RRGIEPSIQILGTLDSSLQ*ATVRQRWQGRLH----HVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTG---MELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFLFGGVV 846
            +D  TAFL G L E +YM+Q  G   K   G+ S      + +  +        R ++ +++ LG   S++      +    +L     +V D+   S   +A+    +L +  L  KF M D G V  +LG+ + +D+E+G I ++    + ++ ++F+M D NP  TP      ++ ++ P+    + +  +  Y+  +GS++FL Q TR DIA  ++  + +  NP   H  +VKR+ RYL G  N  L YS D+N  L GFCDA ++    ++R ST+G ++ L G  +
Sbjct:  898 LDVVTAFLQGDLSEEIYMEQPEGSVTK---GEESKVCLLRRPLYGLKQGSFEWNRKLDSALKSLGFTRSNVDQGIYIKHHDSKLVIIAVYVDDLLLLSNDVKAK----NLTKKQLHKKFEMKDLGAVRNLLGMQVHRDREQGKIFINQATYIDNILRRFNMCDCNPARTPSDPNQRLDKSMAPKSPDEVKDMEKVPYREALGSMMFLCQGTRPDIAHAITSLSVYSENPGKAHWAAVKRLFRYLKGTRNYGLIYSRDTNPTLQGFCDADWAGDTNDRR-STTGYLFTLQGAAL 1182          
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.280e-27
Identity = 81/256 (31.64%), Postives = 128/256 (50.00%), Query Frame = 1
Query:    1 MDFSTAFLNGKLGENVYMQQAPGFKVKDSRG-------DRSS*SCANQSMAFVSLRRRGIEPSIQILGTLDSSLQ*ATVRQRWQGRLHHVY------DISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSY 729
            MD STAFL   + ENV+++Q PGF+VKD  G        +S    A     +       I+P +  +G +   L+  T    +      VY      D+     + +A     S+++  L  +F M D G+V  +LG++I +D+ +GT+++S      S+ ++F M +  P  TPG G EL+ K     LL E   R YQ IVG LI++ Q  R DI +   Q  R M  P+ +HM + K  LRY+ G ++ +++Y
Sbjct:  567 MDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWF----HTIDPFLVEIGFVP--LKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRA----ISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYVAGTTDFRITY 812          
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.770e-27
Identity = 72/182 (39.56%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  307 VRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTPGTGMELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASY--SNVNPEKRTSTSGSMYFLFGGVV 846
            ++  L  KF M D G    +LG++I+Q    G I VS H  V+++  K+ M D  P  TPG+G E+  +PE ++ L E  ++ YQ IVGSL+FL  +TR +I + V    R M  PT+ HM   KR+LRYL G  ++ L +     ++L  +CDAS+  S+   +KR+ST G ++ L GGVV
Sbjct:  404 LKKQLSDKFKMTDGGPAELLLGMEISQSD--GEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFR-RGQWDLKCYCDASFAGSSERLQKRSST-GYIFILAGGVV 581          
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Match: A0A1J3CVC5_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CVC5_NOCCA)

HSP 1 Score: 120 bits (301), Expect = 6.400e-27
Identity = 92/291 (31.62%), Postives = 142/291 (48.80%), Query Frame = 1
Query:    1 MDFSTAFLNGKLGENVYMQQAPGF-----KVKDSRGDRSS*SCANQSMAFVSLRRRGIEPSIQILGTLDSSLQ*ATVRQR-WQGRLHHVYDISRRSAHHQAQ*FGCSLVRSTLMAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSNPVHTP-GTGMELTVKPEGSVL--LDEHGRRDYQAIVGSLIFLIQSTRMDIAFVVSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDASYSNVNPEKRTSTSGSMYFLFGGVV 846
            MD  TAFL+G L E +YM+Q  G+       K     RS          + +     ++    +    DS +    +R+  +   L +V DI   S   +        +++ L ++F M D G+  +ILG++IT+D+ +GT+++S    V  +   F MD S  V T  G         E  +    ++  +  YQ+ VGSL++ +  TR D+A+ V    RFM NP   H   VK ILRYLNG + +KLSY  D  F L G+CDA Y+  + +KR S SG ++ L G  +
Sbjct:  962 MDVKTAFLHGYLDETIYMEQPEGYVDERYPNKVCLLQRSLYGLKQSPRQWNTRFDSFMQSHKYVRSEYDSCVYFKELRRNEYVYLLLYVDDILIASEDKKY----VEELKTLLSSEFEMKDLGEAKKILGMEITRDRVKGTLTISQEGYVKKVLGNFGMDQSKSVSTAMGAHFRFMAATEDELQDQREDMEKIPYQSAVGSLMYSMIGTRPDLAYSVGLVCRFMSNPIKEHWLGVKWILRYLNGTTEMKLSYRNDGEFVLKGYCDADYA-ADLDKRRSISGVVFTLGGNTI 1247          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7911.15939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE3.700e-3332.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0HFF8_LARCR2.850e-3131.65Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A6G0J2S8_LARCR4.730e-3131.65Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A6H5KJH6_9PHAE1.740e-3032.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A498M2F0_LABRO4.640e-2834.11Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6H5JME8_9PHAE5.480e-2830.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7NHJ8_LASNI1.360e-2729.01Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A6H5KL37_9PHAE2.280e-2731.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J897_9PHAE2.770e-2739.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1J3CVC5_NOCCA6.400e-2731.62Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7911contigH-paniculata_contig7911:2982..3827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score102.8
Seed ortholog evalue1.6e-19
Seed eggNOG ortholog35725.K2R9C2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size846
Cds size525
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930985.9114494-UTR-H-paniculata_contig7911:2981..33021622930985.9114494-UTR-H-paniculata_contig7911:2981..3302Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7911 2982..3302 +
1691481539.2318516-UTR-H-paniculata_contig7911:2981..33021691481539.2318516-UTR-H-paniculata_contig7911:2981..3302Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7911 2982..3302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930985.9267554-CDS-H-paniculata_contig7911:3302..38271622930985.9267554-CDS-H-paniculata_contig7911:3302..3827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7911 3303..3827 +
1691481539.2425714-CDS-H-paniculata_contig7911:3302..38271691481539.2425714-CDS-H-paniculata_contig7911:3302..3827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7911 3303..3827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7911.15939.1prot_H-paniculata_contig7911.15939.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7911 3303..3827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7911.15939.1

>prot_H-paniculata_contig7911.15939.1 ID=prot_H-paniculata_contig7911.15939.1|Name=mRNA_H-paniculata_contig7911.15939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
MAKFTMIDFGDVAQILGIDITQDKERGTISVSHHHDVVSLQKKFDMDDSN
PVHTPGTGMELTVKPEGSVLLDEHGRRDYQAIVGSLIFLIQSTRMDIAFV
VSQAARFMVNPTSVHMGSVKRILRYLNGMSNLKLSYSCDSNFELTGFCDA
SYSNVNPEKRTSTSGSMYFLFGGVV
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mRNA from alignment at H-paniculata_contig7911:2982..3827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7911.15939.1 ID=mRNA_H-paniculata_contig7911.15939.1|Name=mRNA_H-paniculata_contig7911.15939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=846bp|location=Sequence derived from alignment at H-paniculata_contig7911:2982..3827+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTTTTCAACTGCTTTTCTGAACGGAAAACTTGGCGAAAACGTCTA CATGCAACAAGCCCCGGGGTTCAAGGTCAAGGACTCACGGGGCGACCGCT CATCATAAAGCTGCGCAAATCAATCTATGGCCTTCGTCAGTCTCCGAAGG CGTGGCATAGAACCATCGATACAGATTCTCGGAACGTTGGATTCGTCGCT ACAATGAGCAACTGTACGTCAAAGGTGGCAGGGACGACTACATCATGTTT ATGATATATCTCGACGATCTGCTCATCACCAGGCCCAATAATTCGGCTGC AGCCTAGTCCGTTCTACACTCATGGCCAAATTTACCATGATTGACTTTGG AGACGTCGCGCAAATTCTAGGGATCGACATCACTCAGGACAAAGAGCGCG GCACCATCAGCGTAAGTCACCACCACGACGTGGTATCGCTGCAGAAGAAA TTCGACATGGATGATAGCAACCCAGTTCACACACCAGGCACAGGCATGGA GCTAACGGTAAAGCCTGAAGGAAGCGTCTTACTGGACGAACACGGTAGAA GAGATTATCAGGCCATCGTCGGGAGTCTCATCTTCTTGATTCAGTCTACA CGTATGGATATAGCGTTTGTTGTCTCACAAGCGGCACGCTTCATGGTCAA TCCTACCTCCGTTCACATGGGAAGCGTGAAGCGCATCTTGCGCTACCTAA ACGGCATGTCAAACCTAAAGCTCAGCTACAGTTGCGACTCCAACTTCGAG CTAACCGGCTTCTGCGACGCCTCCTACAGCAATGTCAACCCCGAGAAACG TACGTCAACCTCAGGGAGTATGTACTTCCTCTTCGGTGGAGTTGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig7911:2982..3827+

>mRNA_H-paniculata_contig7911.15939.1 ID=mRNA_H-paniculata_contig7911.15939.1|Name=mRNA_H-paniculata_contig7911.15939.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig7911:2982..3827+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAAATTTACCATGATTGACTTTGGAGACGTCGCGCAAATTCTAGG
GATCGACATCACTCAGGACAAAGAGCGCGGCACCATCAGCGTAAGTCACC
ACCACGACGTGGTATCGCTGCAGAAGAAATTCGACATGGATGATAGCAAC
CCAGTTCACACACCAGGCACAGGCATGGAGCTAACGGTAAAGCCTGAAGG
AAGCGTCTTACTGGACGAACACGGTAGAAGAGATTATCAGGCCATCGTCG
GGAGTCTCATCTTCTTGATTCAGTCTACACGTATGGATATAGCGTTTGTT
GTCTCACAAGCGGCACGCTTCATGGTCAATCCTACCTCCGTTCACATGGG
AAGCGTGAAGCGCATCTTGCGCTACCTAAACGGCATGTCAAACCTAAAGC
TCAGCTACAGTTGCGACTCCAACTTCGAGCTAACCGGCTTCTGCGACGCC
TCCTACAGCAATGTCAACCCCGAGAAACGTACGTCAACCTCAGGGAGTAT
GTACTTCCTCTTCGGTGGAGTTGTTATGGCCAAATTTACCATGATTGACT
TTGGAGACGTCGCGCAAATTCTAGGGATCGACATCACTCAGGACAAAGAG
CGCGGCACCATCAGCGTAAGTCACCACCACGACGTGGTATCGCTGCAGAA
GAAATTCGACATGGATGATAGCAACCCAGTTCACACACCAGGCACAGGCA
TGGAGCTAACGGTAAAGCCTGAAGGAAGCGTCTTACTGGACGAACACGGT
AGAAGAGATTATCAGGCCATCGTCGGGAGTCTCATCTTCTTGATTCAGTC
TACACGTATGGATATAGCGTTTGTTGTCTCACAAGCGGCACGCTTCATGG
TCAATCCTACCTCCGTTCACATGGGAAGCGTGAAGCGCATCTTGCGCTAC
CTAAACGGCATGTCAAACCTAAAGCTCAGCTACAGTTGCGACTCCAACTT
CGAGCTAACCGGCTTCTGCGACGCCTCCTACAGCAATGTCAACCCCGAGA
AACGTACGTCAACCTCAGGGAGTATGTACTTCCTCTTCGGTGGAGTTGTT
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