mRNA_H-paniculata_contig78942.15916.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 6.760e-16 Identity = 40/55 (72.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query: 1 HMFLDEQSRKGSKSGIAGRGFAMATTTSG--TYFECGENGHIRRNCPRKRGKGRM 159
HM LDEQSRKGSK GIAGRGF M TT S T F CGE GHIRRNC ++RGKGR
Sbjct: 77 HMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGKGRQ 131
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5JSB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB5_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 1.740e-14 Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1
Query: 1 HMFLDEQSRKGSKSGIAGRGFAMATTTSG--TYFECGENGHIRRNCPRKRGKG 153
HMFLDEQSRKG KS IAG GFA+ TTTS T F+CGE GHIR +CP ++GKG
Sbjct: 157 HMFLDEQSRKGPKSRIAGGGFALTTTTSEGPTCFDCGEKGHIRSSCPERKGKG 209
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 1.740e-14 Identity = 38/54 (70.37%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 1 HMFLDEQSRKGSKSGIAGRGFAMATTTSG--TYFECGENGHIRRNCPRKRGKGR 156
HMFLDEQSR G K IAGRGFAM TTS T F+CGE GHI RNC KRGKG+
Sbjct: 192 HMFLDEQSRNGPKGSIAGRGFAMTATTSEEPTCFDCGEKGHIWRNCSEKRGKGK 245
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5JYP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP5_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 2.250e-14 Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 1 HMFLDEQSRKGSKSGIAGRGFAMATTTSG--TYFECGENGHIRRNCPRKRGK 150
HMFLDEQSRK SK GIAGR FAM TTTS ++F CGE HIRRNCP++RG+
Sbjct: 71 HMFLDEQSRKWSKGGIAGRDFAMVTTTSEQTSHFGCGEKRHIRRNCPQRRGQ 122
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5K523_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K523_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 2.890e-13 Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 1 HMFLDEQSRKGSKSGIAGRGFAMATTTSGTY-FECGENGHIRRNCPRKRGKGRM 159
++FLDEQ RK +K IAGRGFAMAT TSG FEC E GH+RRNCP +R KG M
Sbjct: 170 NIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRRRKGHM 223
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5JC59_9PHAE (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC59_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 7.380e-13 Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query: 1 HMFLDEQSRKGSKSGIAGRGFAMATTTSGT-YFECGENGHIRRNCPRKRGKG 153
++FLDEQ RK +K IAGRGFAMAT TSG YFEC E GH+RRNCP ++ +G
Sbjct: 212 NIFLDEQMRKRTKGQIAGRGFAMATKTSGPIYFECNEQGHVRRNCPNRQREG 263
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5JKA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA6_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 1.380e-12 Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query: 1 HMFLDEQSRKGSKSGIAGRGFAMATTTSGTY-FECGENGHIRRNCPRKRGKG 153
++FLDEQ RKG+K IAGRGFAMAT TSG FEC E GH+RRNCP ++ +G
Sbjct: 212 NIFLDEQMRKGTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREG 263
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 5.160e-12 Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 1 HMFLDEQSRKGSKSGIAGRGFAMATTTSGTY-FECGENGHIRRNCPRKRGKGRM 159
++FLDEQ RK +K IAGRGFAMAT TSG FEC E GH+RRNC ++ +GRM
Sbjct: 212 NIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCSNRQREGRM 265
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5K9W5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W5_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 1.520e-11 Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 1 HMFLDEQSRKGSKSGIAGRGFAMATTTSGTY-FECGENGHIRRNCPRKRGKGRM 159
++FLDEQ RK +K IAGRGFAMAT TSG FEC E H+RRNCP ++ KG M
Sbjct: 176 NIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECHEPRHVRRNCPNRQRKGHM 229
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5KMR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR7_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 1.570e-11 Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1
Query: 1 HMFLDEQSRKGSKSGIAGRGFAMATTTSGTY-FECGENGHIRRNCPRKRGKG 153
++FLDEQ RK +K IAGRGFAMAT TSG FEC E GH+RRNCP ++ +G
Sbjct: 212 NIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREG 263 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig78942.15916.1 >prot_H-paniculata_contig78942.15916.1 ID=prot_H-paniculata_contig78942.15916.1|Name=mRNA_H-paniculata_contig78942.15916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp MFLDEQSRKGSKSGIAGRGFAMATTTSGTYFECGENGHIRRNCPRKRGKGback to top mRNA from alignment at H-paniculata_contig78942:339..497+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig78942.15916.1 ID=mRNA_H-paniculata_contig78942.15916.1|Name=mRNA_H-paniculata_contig78942.15916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig78942:339..497+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig78942:339..497+ >mRNA_H-paniculata_contig78942.15916.1 ID=mRNA_H-paniculata_contig78942.15916.1|Name=mRNA_H-paniculata_contig78942.15916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig78942:339..497+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |