mRNA_H-paniculata_contig78942.15916.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig78942.15916.1
Unique NamemRNA_H-paniculata_contig78942.15916.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 6.760e-16
Identity = 40/55 (72.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 HMFLDEQSRKGSKSGIAGRGFAMATTTSG--TYFECGENGHIRRNCPRKRGKGRM 159
            HM LDEQSRKGSK GIAGRGF M TT S   T F CGE GHIRRNC ++RGKGR 
Sbjct:   77 HMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGKGRQ 131          
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5JSB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.740e-14
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1
Query:    1 HMFLDEQSRKGSKSGIAGRGFAMATTTSG--TYFECGENGHIRRNCPRKRGKG 153
            HMFLDEQSRKG KS IAG GFA+ TTTS   T F+CGE GHIR +CP ++GKG
Sbjct:  157 HMFLDEQSRKGPKSRIAGGGFALTTTTSEGPTCFDCGEKGHIRSSCPERKGKG 209          
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.740e-14
Identity = 38/54 (70.37%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 HMFLDEQSRKGSKSGIAGRGFAMATTTSG--TYFECGENGHIRRNCPRKRGKGR 156
            HMFLDEQSR G K  IAGRGFAM  TTS   T F+CGE GHI RNC  KRGKG+
Sbjct:  192 HMFLDEQSRNGPKGSIAGRGFAMTATTSEEPTCFDCGEKGHIWRNCSEKRGKGK 245          
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5JYP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.250e-14
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 HMFLDEQSRKGSKSGIAGRGFAMATTTSG--TYFECGENGHIRRNCPRKRGK 150
            HMFLDEQSRK SK GIAGR FAM TTTS   ++F CGE  HIRRNCP++RG+
Sbjct:   71 HMFLDEQSRKWSKGGIAGRDFAMVTTTSEQTSHFGCGEKRHIRRNCPQRRGQ 122          
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5K523_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K523_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.890e-13
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 HMFLDEQSRKGSKSGIAGRGFAMATTTSGTY-FECGENGHIRRNCPRKRGKGRM 159
            ++FLDEQ RK +K  IAGRGFAMAT TSG   FEC E GH+RRNCP +R KG M
Sbjct:  170 NIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRRRKGHM 223          
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5JC59_9PHAE (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC59_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 7.380e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 HMFLDEQSRKGSKSGIAGRGFAMATTTSGT-YFECGENGHIRRNCPRKRGKG 153
            ++FLDEQ RK +K  IAGRGFAMAT TSG  YFEC E GH+RRNCP ++ +G
Sbjct:  212 NIFLDEQMRKRTKGQIAGRGFAMATKTSGPIYFECNEQGHVRRNCPNRQREG 263          
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5JKA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.380e-12
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 HMFLDEQSRKGSKSGIAGRGFAMATTTSGTY-FECGENGHIRRNCPRKRGKG 153
            ++FLDEQ RKG+K  IAGRGFAMAT TSG   FEC E GH+RRNCP ++ +G
Sbjct:  212 NIFLDEQMRKGTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREG 263          
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.160e-12
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 HMFLDEQSRKGSKSGIAGRGFAMATTTSGTY-FECGENGHIRRNCPRKRGKGRM 159
            ++FLDEQ RK +K  IAGRGFAMAT TSG   FEC E GH+RRNC  ++ +GRM
Sbjct:  212 NIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCSNRQREGRM 265          
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5K9W5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.520e-11
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 HMFLDEQSRKGSKSGIAGRGFAMATTTSGTY-FECGENGHIRRNCPRKRGKGRM 159
            ++FLDEQ RK +K  IAGRGFAMAT TSG   FEC E  H+RRNCP ++ KG M
Sbjct:  176 NIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECHEPRHVRRNCPNRQRKGHM 229          
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Match: A0A6H5KMR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.570e-11
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 HMFLDEQSRKGSKSGIAGRGFAMATTTSGTY-FECGENGHIRRNCPRKRGKG 153
            ++FLDEQ RK +K  IAGRGFAMAT TSG   FEC E GH+RRNCP ++ +G
Sbjct:  212 NIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREG 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig78942.15916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Q1_ECTSI6.760e-1672.73CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JSB5_9PHAE1.740e-1469.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW66_9PHAE1.740e-1470.37CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JYP5_9PHAE2.250e-1471.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K523_9PHAE2.890e-1366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC59_9PHAE7.380e-1365.38gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A6H5JKA6_9PHAE1.380e-1265.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXA1_9PHAE5.160e-1262.96CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9W5_9PHAE1.520e-1162.96CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KMR7_9PHAE1.570e-1163.46CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig78942contigH-paniculata_contig78942:339..497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930982.0004413-UTR-H-paniculata_contig78942:338..3411622930982.0004413-UTR-H-paniculata_contig78942:338..341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig78942 339..341 +
1691481537.5385594-UTR-H-paniculata_contig78942:338..3411691481537.5385594-UTR-H-paniculata_contig78942:338..341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig78942 339..341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930982.0152652-CDS-H-paniculata_contig78942:341..4971622930982.0152652-CDS-H-paniculata_contig78942:341..497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78942 342..497 +
1691481537.5513062-CDS-H-paniculata_contig78942:341..4971691481537.5513062-CDS-H-paniculata_contig78942:341..497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78942 342..497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig78942.15916.1prot_H-paniculata_contig78942.15916.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig78942 342..497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig78942.15916.1

>prot_H-paniculata_contig78942.15916.1 ID=prot_H-paniculata_contig78942.15916.1|Name=mRNA_H-paniculata_contig78942.15916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MFLDEQSRKGSKSGIAGRGFAMATTTSGTYFECGENGHIRRNCPRKRGKG
RM
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mRNA from alignment at H-paniculata_contig78942:339..497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig78942.15916.1 ID=mRNA_H-paniculata_contig78942.15916.1|Name=mRNA_H-paniculata_contig78942.15916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig78942:339..497+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACATGTTTCTAGACGAACAATCTCGCAAAGGATCCAAAAGTGGCATTGC CGGCCGCGGCTTCGCCATGGCCACAACCACATCGGGGACCTATTTCGAAT GCGGCGAGAATGGACACATCCGCAGGAACTGCCCCCGAAAGAGAGGCAAG GGAAGAATG
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Coding sequence (CDS) from alignment at H-paniculata_contig78942:339..497+

>mRNA_H-paniculata_contig78942.15916.1 ID=mRNA_H-paniculata_contig78942.15916.1|Name=mRNA_H-paniculata_contig78942.15916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig78942:339..497+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCTAGACGAACAATCTCGCAAAGGATCCAAAAGTGGCATTGCCGG
CCGCGGCTTCGCCATGGCCACAACCACATCGGGGACCTATTTCGAATGCG
GCGAGAATGGACACATCCGCAGGAACTGCCCCCGAAAGAGAGGCAAGGGA
AGAATGATGTTTCTAGACGAACAATCTCGCAAAGGATCCAAAAGTGGCAT
TGCCGGCCGCGGCTTCGCCATGGCCACAACCACATCGGGGACCTATTTCG
AATGCGGCGAGAATGGACACATCCGCAGGAACTGCCCCCGAAAGAGAGGC
AAGGGAAGAATG
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