mRNA_H-paniculata_contig7893.15914.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7893.15914.1
Unique NamemRNA_H-paniculata_contig7893.15914.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7893.15914.1 vs. uniprot
Match: D7FKE8_ECTSI (Swi3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE8_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 3.720e-61
Identity = 207/529 (39.13%), Postives = 268/529 (50.66%), Query Frame = 3 
Query:  246 EEKKASKRI--KIPAFSENNLITAKGLTKIYEDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYRALAFEDLASRTEKLGGKGRTREFLRELRDKERDRVLKVEVGKSAKDDVRAEEAANRA---DQVNSADGGDVEKQKDSEEVETRLANSRY-MDVDEEGEGEREHPSDKGPGSRSKFAAAPVVGALSVEVRARMEANRRLALERLRRKKEEAASALSTSSAGAIVGKSISATPLAADIIGKGVTEDDLMHLDAEELNGEPQDNFEDDEAALAEMEAEEPATKKSKLSVDTATPATTLLESNISCSLDKTFAPKIFEVPSLAVDTLPGST---ERSPVDGDGGATHGLSTAPTDEATVSGRTGNGVVGKAVAPKPEGIDEGSTPTAHPAGSESSKRETTASKMCIPA--TSGDQEIYKGDVKSAEALTEKAAKAA-ADGSNG--RKDKGISSNTAAAFGVMTGSVKNVGEILLAVS-PQKCKATE----SEVPMSPLGRMLADTDIPAEGGSLAVRVPIAGLSADK 1775
            EE   +K++  + PAFSEN+L+  KGL +IY+DFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLY  +AFEDLA RTEKLGG+ RTR  LRELRD ERDRVL+ + G+ A DDV A+EAA  A    +  +A+G  VE+++D E     LA SRY M+VD  G+G  E  SD+      + AA      +S +VR R+EANRRLAL+RLR KK+E                                 E+DLM +D     G P D+F+DDEAALA+MEAEE A +   ++ + +    T+ E                     AV T P ST   ER       G    +  A    A  + R+G               + G+T     AG ES      AS+   PA    G +E    + ++A   T  AA AA ADG  G  + D  +                       + S P KC+       S +P+SPLG + A TD+ AEGG    R P+ GL +D+
Sbjct:   50 EEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLACRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRVEEREDEE-----LAGSRYAMEVD--GDGGDEGKSDR------QVAAEGSAATMSDQVRQRIEANRRLALDRLRLKKQEXXXXXXXXXXXXXXXXXXXXXXXNDGSREVEDPEEDLMDVDG---GGGPGDSFDDDEAALADMEAEEMAARP--VAAEASRGKNTVAEPG-----------------PAAVVTSPPSTLAVERGARAAGAGCAGSVDEASAKCAVAAARSG---------------EPGTT-----AGEESGGELPPASEPSAPAPGVGGGRERDGANDEAASLGTTAAASAAGADGITGGAKLDDAVLGXXXXXXXXXXXXXXXXXXXXASFSSPAKCRXXXXXXASGLPLSPLGSLFAGTDVSAEGGLAVAREPLGGLFSDE 523
[Close]
BLAST of mRNA_H-paniculata_contig7893.15914.1 vs. uniprot
Match: A0A6H5L0P4_9PHAE (Swi3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P4_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 2.920e-60
Identity = 205/552 (37.14%), Postives = 277/552 (50.18%), Query Frame = 3 
Query:  279 PAFSENNLITAKGLTKIYEDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYRALAFEDLASRTEKLGGKGRTREFLRELRDKERDRVLKVEVGKSAKDDVRAEEAANRA---DQVNSADGGDVEKQKDSEEVETRLANSRY-MDVDEEGEGEREHPSDKGPGSRSKFAAAPVVGALSVEVRARMEANRRLALERLRRKKEEAASALSTSSAGAIVGKSISATPL--AADIIGKGVT--EDDLMHLDAEELNGEPQDNFEDDEAALAEMEAEEPATKKSKLSVDTATPATTLLESN---ISCSLDKTFAPKIFEVPSLAVDTL----PGSTERSPVDGDGGATHGLSTAPTDEATVSGRTGNGVVGKAVAPKPEGIDEGSTPTAHPAGSESSKRETTASKMCIPATSGDQEIYKGDVKSAEALTEKAAKAAADGSNGRKDKGISSNTAAAFGVMT-------------GSVKNVGEILLAV----------------------SPQKCK---ATESEVPMSPLGRMLADTDIPAEGGSLAVRVPIAGLSADK 1775
            PAFSEN+L+  KGL ++Y+DFPQKC+YKGRGREAEFLRGLMVAYKEWGYQLY  +AFEDLASRTEKL G+ RTR  +RELRD ERDRVL+ + G+ A DDV ++EAA  A    +  +A+G   E+++D E      A SRY M+VD  G+G  E  SD+      + AA     A+S +VR R+EANRRLAL+RLR KK EA+ A                     AA+   + V   E+DLM +D     G P D F+DDEAALA+ME E+ A +   ++ + +    T+ E     +S S   T A +  E      + L    P   E   ++  G    G +TA    A V+    +     A A   +G+  G    A  AG   +  E  A+     A  G+ +   G+    E            G  G +D+  +++ AA+   MT             G  K    +L                         SP KC+   A  S +P+SPLG + A TD+ AEGG   VR P+ GL +D+
Sbjct:   63 PAFSENHLVKEKGLWQVYKDFPQKCRYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLAGRARTRSLMRELRDTERDRVLEAKFGREAVDDVHSQEAARLAAKESKTAAAEGDRAEEREDEE-----FAGSRYTMEVD--GDGGDEGKSDR------QVAAEGSAAAMSEQVRQRIEANRRLALDRLRSKKHEASVAXXXXXXXXXXXXXXXXXXXXXAANDGSREVEDLEEDLMDVDG---GGGPGDGFDDDEAALADMETEQMAARP--VAAEASRRKNTVAEPGPAVVSTSPASTLAVESDETAGAVDEELAPPEPSIREDEAMEDTGSRASGANTAA---AVVADDAKDPAPVSAAA---DGVARGGARAAG-AGCAGNVDEAPATWAADAAGGGEPDATAGEESGGELPPASEPGTPGPGVGGGQDRDGANDEAASLRTMTAXXXXXXXXDGITGGAKVDDAVLXXXXXXXXAPEPVAAKGDEEGASFSSPAKCRSATAAASGLPLSPLGTLFAGTDVSAEGGLAVVREPLGGLFSDE 589
[Close]
BLAST of mRNA_H-paniculata_contig7893.15914.1 vs. uniprot
Match: A0A836CM34_9STRA (Swi3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM34_9STRA)

HSP 1 Score: 105 bits (262), Expect = 9.670e-20
Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 3 
Query:  252 KKASKRIKIPAFSENNLITAKGLTKIYEDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYRALAFEDLASRTEKLGGKGRTREFLRELRDKERDRVLKVEVGKSA 569
            KK +KR + P FSE  L+  KGL KI +DFP++ +   +G+E EFL  LM  YKEWGYQLY +LAFEDLA R E LGGK R R  L  +RD+ERDR ++   GK A
Sbjct:   58 KKPAKR-RAPPFSEVQLVEGKGLMKIRDDFPKRLKPCVKGKEREFLSRLMFLYKEWGYQLYPSLAFEDLAVRIETLGGKERVRGHLAMMRDEERDRCVRARHGKDA 162
[Close]
BLAST of mRNA_H-paniculata_contig7893.15914.1 vs. uniprot
Match: A0A7S1TV66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV66_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.620e-13
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 3 
Query:  258 ASKRIKIPAFSENNLITAKGLTKIYEDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYRALAFEDLASRTEKLGGKGRTREFLRELRDKERDRVLKVEVG 560
            A KR + P F E+ L +A GLTKI E+FP+  +++G G EAE L  ++  Y+EW +QLY +L +ED+  RT KL  K R +E     R   +   LK   G
Sbjct:   50 AKKRTRAPPFGESLLCSAAGLTKILEEFPRDLKFRGEGHEAEDLDRVLRLYREWAFQLYPSLHWEDVTDRTNKLRNKPRVKEIQENARLAAKASFLKQRYG 150
[Close]
BLAST of mRNA_H-paniculata_contig7893.15914.1 vs. uniprot
Match: A0A0P1APB5_PLAHL (Timeless-interacting protein isoform x3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APB5_PLAHL)

HSP 1 Score: 74.3 bits (181), Expect = 8.150e-12
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 3 
Query:  291 ENNLITAKGLTKIYEDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYRALAFEDLASRTEKLGGKGRTREFLRELRDKERDRVLKVEVGKSAKD---DVRAEEA 596
            E++LI+A+G  K++  FP +      GREA+ L  L+  YK+W + LY  L FED   RTE LG   + +  + ELR+KER + LK  + +  KD   D   EEA
Sbjct:   55 ESHLISAEGFQKVHRTFPYQVSADVSGREAQALASLVKMYKQWAFDLYPGLNFEDFVERTETLGKGRQVQALMMELREKERLKYLKTIIDQDEKDEKADSEGEEA 159
[Close]
BLAST of mRNA_H-paniculata_contig7893.15914.1 vs. uniprot
Match: A0A484EHM7_BRELC (Swi3 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHM7_BRELC)

HSP 1 Score: 71.2 bits (173), Expect = 1.440e-10
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 3 
Query:  291 ENNLITAKGLTKIYEDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYRALAFEDLASRTEKLGGKGRTREFLRELRDKERDRVLKVEVGKSAKDDVRAEE 593
            E++L++A+G  K++  FP +      GREA+ L  L+  YK+W Y LY  L FED A RTE L    + +  + ELR+KER + +K    +  + D + EE
Sbjct:   75 ESHLVSAEGFKKVHRTFPYQVSADVSGREAQALASLIRMYKQWAYDLYPGLNFEDFAERTEMLSKGHQVQGLMTELREKERLKFVKKREEEEGEGDEKIEE 175
[Close]
BLAST of mRNA_H-paniculata_contig7893.15914.1 vs. uniprot
Match: A0A2P4YEG9_9STRA (Swi3 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YEG9_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.540e-10
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 3 
Query:  291 ENNLITAKGLTKIYEDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYRALAFEDLASRTEKLGGKGRTREFLRELRDKERDRVLK 548
            E++L++A G  K++  FP +      GREA+ L  LM  YK+W + LY  L FED   RTE LG   + +  + ELR+KE+ + LK
Sbjct:   55 ESHLVSADGFKKVHRTFPYQVSTDVSGREAQALASLMKMYKQWAFDLYPGLNFEDFIERTESLGKGHQVQGLMTELREKEKVKALK 140
[Close]
BLAST of mRNA_H-paniculata_contig7893.15914.1 vs. uniprot
Match: M4BUG3_HYAAE (Swi3 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUG3_HYAAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.780e-10
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 3 
Query:  261 SKRIKIPAFSENNLITAKGLTKIYEDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYRALAFEDLASRTEKLGGKGRTREFLRELRDKERDRVLKVEVGKSAKD 575
            SK+ +     E++L++A+G  K+Y  FP +      GREA  L  L+  YK+W Y LY  L FED   RTE L    + +  + E+R+KER + ++   GK  +D
Sbjct:   44 SKKRRRNLLRESHLLSAEGFKKVYRTFPYQVSSTVSGREAPALASLIKMYKQWAYDLYPGLNFEDFVDRTETLAKGHQVQGLMAEMREKERRKRVERRCGKDEED 148
[Close]
BLAST of mRNA_H-paniculata_contig7893.15914.1 vs. uniprot
Match: A0A397E7Y0_9STRA (Swi3 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E7Y0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.830e-10
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 3 
Query:  285 FSENNLITAKGLTKIYEDFPQKCQYK-GRGREAEFLRGLMVAYKEWGYQLYRALAFEDLASRTEKLGGKGRTREFLRELRDKERDR 539
            FSE +L+  +GL+ +Y  FP         G E E LR L+ AYKEW Y+LY  L FEDL  +TE L  K     F+ +LR +ER R
Sbjct:   56 FSEQHLLGPRGLSLVYSTFPTHFNRAVTHGNEGEALRELITAYKEWAYELYPGLNFEDLVDKTEALAKKAAVSSFIADLRQQERKR 141
[Close]
BLAST of mRNA_H-paniculata_contig7893.15914.1 vs. uniprot
Match: A0A397BHD7_9STRA (Swi3 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BHD7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.150e-9
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 3 
Query:  285 FSENNLITAKGLTKIYEDFPQKCQYK-GRGREAEFLRGLMVAYKEWGYQLYRALAFEDLASRTEKLGGKGRTREFLRELRDKERDR 539
            FSE +L+  +GL+ +Y  FP         G E E LR L+ AYKEW Y+LY  L FEDL  +TE L  K     F+ +LR +ER R
Sbjct:   56 FSEQHLLGPRGLSLVYSTFPTHFNRAVTHGNEGEALRELITAYKEWAYELYPGLNFEDLVDKTEALAKKAAVSSFIADLRQQERKR 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7893.15914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKE8_ECTSI3.720e-6139.13Swi3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L0P4_9PHAE2.920e-6037.14Swi3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CM34_9STRA9.670e-2054.72Swi3 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S1TV66_9STRA8.620e-1341.58Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0P1APB5_PLAHL8.150e-1240.00Timeless-interacting protein isoform x3 n=1 Tax=Pl... [more]
A0A484EHM7_BRELC1.440e-1037.62Swi3 domain-containing protein n=1 Tax=Bremia lact... [more]
A0A2P4YEG9_9STRA1.540e-1040.70Swi3 domain-containing protein n=1 Tax=Phytophthor... [more]
M4BUG3_HYAAE1.780e-1036.19Swi3 domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A397E7Y0_9STRA4.830e-1044.19Swi3 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A397BHD7_9STRA1.150e-944.19Swi3 domain-containing protein n=5 Tax=Aphanomyces... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7893contigH-paniculata_contig7893:722..5218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.7
Seed ortholog evalue1.4e-59
Seed eggNOG ortholog2880.D7FKE8
Preferred nameCSM3
KEGG koko:K10904,ko:K10998
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000076,GO:0000077,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000403,GO:0000785,GO:0000790,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007346,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010453,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031494,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0032991,GO:0033262,GO:0033554,GO:0034085,GO:0034087,GO:0034641,GO:0034645,GO:0035822,GO:0042127,GO:0043111,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043570,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044773,GO:0044774,GO:0045005,GO:0045132,GO:0045165,GO:0045595,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071514,GO:0071515,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1903047,GO:2000104,GO:2000112,GO:2000113,GO:2000241
EggNOG free text desc.replication fork protection
EggNOG OGsKOG3004@1,KOG3004@2759
Ec32 ortholog descriptionReplication fork protection component Swi3
Ec32 orthologEc-12_002330.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03400
Exons2
Model size2265
Cds size1695
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7893.15914.1prot_H-paniculata_contig7893.15914.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7893 1206..5132 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930981.826206-UTR-H-paniculata_contig7893:721..12051622930981.826206-UTR-H-paniculata_contig7893:721..1205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7893 722..1205 -
1691481537.4278705-UTR-H-paniculata_contig7893:721..12051691481537.4278705-UTR-H-paniculata_contig7893:721..1205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7893 722..1205 -
1622930981.8682714-UTR-H-paniculata_contig7893:5132..52181622930981.8682714-UTR-H-paniculata_contig7893:5132..5218Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7893 5133..5218 -
1691481537.4748662-UTR-H-paniculata_contig7893:5132..52181691481537.4748662-UTR-H-paniculata_contig7893:5132..5218Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7893 5133..5218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930981.8413942-CDS-H-paniculata_contig7893:1205..26091622930981.8413942-CDS-H-paniculata_contig7893:1205..2609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7893 1206..2609 -
1691481537.4444084-CDS-H-paniculata_contig7893:1205..26091691481537.4444084-CDS-H-paniculata_contig7893:1205..2609Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7893 1206..2609 -
1622930981.856763-CDS-H-paniculata_contig7893:4841..51321622930981.856763-CDS-H-paniculata_contig7893:4841..5132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7893 4842..5132 -
1691481537.4597657-CDS-H-paniculata_contig7893:4841..51321691481537.4597657-CDS-H-paniculata_contig7893:4841..5132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7893 4842..5132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7893.15914.1

>prot_H-paniculata_contig7893.15914.1 ID=prot_H-paniculata_contig7893.15914.1|Name=mRNA_H-paniculata_contig7893.15914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=565bp
MSGSDSDEGRPRPIGAEQESEDDESDREVNSNEDGAKSAAAEGAAAAGAA
APGEEKKASKRIKIPAFSENNLITAKGLTKIYEDFPQKCQYKGRGREAEF
LRGLMVAYKEWGYQLYRALAFEDLASRTEKLGGKGRTREFLRELRDKERD
RVLKVEVGKSAKDDVRAEEAANRADQVNSADGGDVEKQKDSEEVETRLAN
SRYMDVDEEGEGEREHPSDKGPGSRSKFAAAPVVGALSVEVRARMEANRR
LALERLRRKKEEAASALSTSSAGAIVGKSISATPLAADIIGKGVTEDDLM
HLDAEELNGEPQDNFEDDEAALAEMEAEEPATKKSKLSVDTATPATTLLE
SNISCSLDKTFAPKIFEVPSLAVDTLPGSTERSPVDGDGGATHGLSTAPT
DEATVSGRTGNGVVGKAVAPKPEGIDEGSTPTAHPAGSESSKRETTASKM
CIPATSGDQEIYKGDVKSAEALTEKAAKAAADGSNGRKDKGISSNTAAAF
GVMTGSVKNVGEILLAVSPQKCKATESEVPMSPLGRMLADTDIPAEGGSL
AVRVPIAGLSADKP*
back to top

mRNA from alignment at H-paniculata_contig7893:722..5218-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7893.15914.1 ID=mRNA_H-paniculata_contig7893.15914.1|Name=mRNA_H-paniculata_contig7893.15914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4497bp|location=Sequence derived from alignment at H-paniculata_contig7893:722..5218- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGTGATGTGCACCCTTTTTCCCATCCTCAAACCAGCTCGCCTCTGGGA
GCCTGCGACGGCCTGAGTAAAGAAGAAATAGACAATATGTCGGGATCAGA
CTCGGATGAAGGACGACCGCGGCCGATCGGCGCAGAACAAGAGAGCGAAG
ATGATGAAAGCGACCGGGAAGTGAACAGCAATGAAGATGGCGCGAAATCA
GCAGCGGCAGAAGGAGCGGCGGCGGCAGGGGCGGCCGCGCCAGGCGAGGA
GAAGAAAGCTTCCAAGAGAATCAAAATCCCTGCCTTCTCAGAGAACAACT
TGATCACAGCCAAGGGTCTCACTAAGATCTATGAGGATTTTCCGCAGAAG
TGCCAGTACAAAGGCAGAGGTCGTGAGGTGGGATGTAGCACATTCTTGTC
ATGTTGGGAAAAAATAATGGCTACTGTACTGTACTGTACTGTATGGACTC
TGCACCTTTGGGAGGGTTGATTATAGCAAGTGCACTACTGCAACTCTACC
TGCGGTACATATTACTGAACTGCGCTGGACTGGATTCTCTGTAATCTAAA
ATGCATGTAACTGGGCAGTGGAGTACATGAACCTCGCGATACCACACCCC
ATCTGTAACTACTTTGCTGTTTTTTTGGCTGATATCTGTACCAGGGTAAG
GGTACTGTGATATACACCGACGGGATTTCGACCAAGCATGGATTTAAAGA
TGATCTCGTGGACGCCCATCGCACTTCGAACTATGCATAGGTTGTATACC
ATCCTGTATCGTCCATGCCCGAAGTTCTCCTCCGTTGTTTATATCGGAGG
ACCGTTTAACTTGTGGGTACTGCTACCGCATTCCATAAGCTCGCCCATTT
GCATATGATATCTAAAAGTATCCTGTCGAGGACTTTTCTTGGGGTTTTCA
ACTGAACGAATCACGTAAACTGGACAAACCATGCACCTGGAAAACTAACA
TTTGCATCAGTTTCAGTTATCAGCGTACATGGTAAGCTGACGCCAAAGCT
CCCGGGATAGATAGGCAACACGGACGGGCGAGCCATAAAACGATCTATTA
TAGAGTGAGCTATTGAGGGGAATGGAGACAACAAACAAGCGCCATTTCGT
TGCTCATTCCTCCATAATAGTGTTGGGTTCCCGCCCTCATATGATGACGG
AGCCCCGAGTATGCGGTTGCCCCCAAACGGTGAAATATCGATTTTTCGTG
GCTCGGTTACGTATTTTTTCCGCGGATACCGTTGAATGAGGAGTCGGCTT
TGAAGAGCATGTATCGGTACGGATATTGTCCGATATATCGTTCAATTCGA
CATTATTTATCTATCTTTTTTAGGACCGATATCGGTGCTCGCCGTCACCG
GCTCTATAATTATATATTTGTACTATTAGCCATGGACTGTACGAAATATC
AGTCATTATCCATGCCCTGGGCGGTTGATTACACGTGGGACATGGGGCAC
ACAGCTGTTCACAGGCAGCACAATGAGCTCAGCGAGCCCGACAGACACAC
AGGCACCTTCGGGCTCACAGTTCCATGATATACATTCGGGCGTTAGGACT
ATCCATGCACTATACTCCGGAATATTTATTTTGTTTTGGTGTGATCTGTT
TTTCTAGTAAGACGTCAATTTTTCGTCAGCACGGTAGCAGCATATGGAAG
CTACAGGGTGTCAAATTACAGCTGTTCCGGATCTGTGAAAGGTCTATTGA
CTTTTAATCGATTCTCCGTTTGTGATGCGGTCTGGCATTCATGTTGCATC
TTGGTTCTATCTGAAAAGATCGAAAAGGCAGACGTTCAGATTTAACTCCG
CCCGTGGGATTGTTTCTTATATCTTCATGAGAGTGTTGTTTAATGTTGAA
GATATTTCATGTTTGACGTTTGAAAACTTTGTACTTGGTACTTGGTATGT
GCATTGAATGAAGAAAACCTGACTAACAAAAAATACCACAATAGCTACCG
TCGGCACCGTTTGCTATCTTACCATCTTGCAAACATTTTTTTTTTTTTTC
ATGTGAATTTCGTGTGTTGACGTTCATTCATCTCTTCTTGGTCAAATTGT
TATTAATTTGAATTGATTTTGCAAGAAAGATGAAACCAAAAGGCGTGTTT
TTCTTTCCTTCGGGGGGGGCGTTGCGCCTTCGCCGCGGTGCCACCATCTC
TTTTACTACGTGATACCAATTCATCGTCCCGCTCTCGGTTTCTGCGGCAG
CTTTCGTGCCATATCGTCTCATCCTTTTTTTTTCCAATGGTCGTTGTTGT
CTATGTTCTACCAAACCCACTGGATATAAGCACTGAAATTCGCGCTACGC
TACACAGAATTGCGATAGATACTATTTTTTTGGTCCATGGTTCGCGCGGA
AGTGCTGACGCTCACCACGAACGTGACTTCTCCTTCGTGTTTTTGAGACA
CGACCACTTGTCCTCCGCTTCGAATACCGTACCCGGCAAAGACAGGGTCC
TGTAAAAACAGCTACACTTATAGGCAGCGTTTTTCCTCAGTGCTATTCGC
TTGGTTTACTTGGCAGAGAGAATTTGACATTTAACAGTTGCTATGTCCAT
CGTAGTTATAATGCGTGACGCTTCAATATCTTATCGCCCCTCTTGGTATA
TTTTGCCAGGCGGAGTTCTTGAGAGGTTTAATGGTCGCCTACAAGGAATG
GGGCTACCAGCTATACCGCGCTCTCGCATTTGAAGACTTGGCTAGTCGCA
CGGAGAAGCTGGGGGGAAAGGGACGCACACGGGAATTTTTGAGAGAGCTC
CGCGACAAAGAGAGGGATCGCGTACTGAAAGTTGAGGTTGGCAAATCCGC
TAAGGATGACGTTCGTGCAGAGGAGGCCGCAAATAGGGCGGACCAGGTCA
ATTCCGCTGATGGCGGTGACGTCGAGAAGCAAAAGGACAGCGAGGAGGTC
GAGACACGGCTCGCAAACAGTCGGTACATGGACGTTGACGAAGAGGGAGA
GGGAGAGAGAGAACACCCCAGCGATAAGGGACCTGGATCAAGGTCAAAGT
TTGCCGCAGCGCCTGTAGTAGGAGCTTTATCGGTTGAGGTGCGAGCTCGC
ATGGAGGCCAATCGCCGCCTAGCGCTGGAGCGGCTTCGCCGAAAAAAAGA
GGAGGCGGCGTCGGCTTTGTCCACGTCGTCCGCTGGGGCGATAGTAGGCA
AGAGCATATCTGCGACACCATTGGCCGCTGATATCATCGGCAAGGGGGTA
ACTGAAGATGATCTAATGCACCTGGATGCCGAGGAATTGAATGGTGAGCC
ACAAGACAATTTTGAAGATGATGAAGCTGCTCTTGCGGAGATGGAAGCTG
AGGAGCCGGCTACCAAAAAATCTAAGTTATCCGTGGATACCGCTACTCCA
GCAACGACATTGTTGGAATCAAACATTTCTTGTTCACTCGATAAAACTTT
TGCCCCAAAGATTTTTGAGGTACCATCGCTCGCGGTGGACACACTCCCTG
GCAGCACCGAGAGATCACCTGTTGACGGTGACGGTGGTGCAACTCATGGA
TTATCGACAGCACCTACCGACGAAGCCACTGTCTCTGGCCGTACTGGCAA
TGGAGTGGTCGGTAAGGCTGTAGCGCCCAAGCCAGAAGGTATTGATGAGG
GTTCGACACCGACGGCGCACCCAGCAGGTAGCGAATCTTCGAAACGGGAG
ACGACCGCCTCTAAAATGTGTATCCCTGCTACTAGCGGCGATCAGGAAAT
CTATAAAGGCGATGTAAAGTCGGCGGAGGCATTGACGGAAAAGGCAGCAA
AGGCAGCAGCAGATGGTTCCAATGGGCGTAAGGACAAGGGTATCAGTAGT
AACACAGCAGCAGCGTTCGGGGTTATGACAGGTTCGGTCAAGAACGTTGG
TGAAATTTTACTCGCCGTCAGTCCTCAGAAATGCAAAGCTACAGAAAGTG
AAGTGCCAATGTCGCCGCTTGGGCGAATGCTTGCCGACACCGATATCCCT
GCTGAAGGTGGATCTTTAGCGGTGCGGGTGCCCATAGCTGGACTATCTGC
CGACAAACCATAGGAGGTTGTAAACTATAGGTCCAGTCAGTACTGTCGTA
CACCGTGGTTTCGTTGCGTGCTATACACAGTGAGACAACATAGTTTTTCC
CTGTTGCTTCCGTTGTTGAGGTTTTGGCGGCGTGCTACCGTACGCCCTGT
ATAAGGTCATGTCTATGGCAAAAGGGGCTTTCTCTTGCTTGGGAATTCAT
GTGCTGTACGACATGATATATGACTTTGAGTTATTGTCTCGACGTTGGTG
CCGTTATACGGGGTGCGCTATGCGCAAGGTAACTATCTTGATTTCTGTTT
TTATCTTGCCTCGTGTTGAGAAACCAATAGCTGATTATGGCGATACATTC
CAATGTTGGGTCCCTCATTGTGTAGACTATGTTGTCGCCACCTCTTCTGC
TTTATTTTTTCTTCTGATTAATAATTGATAGTTGATCTTCCAGTATTGTC
ATAATCTATCCGACCGATATTATTATGAAGATAACCGATTCGCTAGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7893:722..5218-

>mRNA_H-paniculata_contig7893.15914.1 ID=mRNA_H-paniculata_contig7893.15914.1|Name=mRNA_H-paniculata_contig7893.15914.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3390bp|location=Sequence derived from alignment at H-paniculata_contig7893:722..5218- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGGATCAGACTCGGATGAAGGACGACCGCGGCCGATCGGCGCAGA
ACAAGAGAGCGAAGATGATGAAAGCGACCGGGAAGTGAACAGCAATGAAG
ATGGCGCGAAATCAGCAGCGGCAGAAGGAGCGGCGGCGGCAGGGGCGGCC
GCGCCAGGCGAGGAGAAGAAAGCTTCCAAGAGAATCAAAATCCCTGCCTT
CTCAGAGAACAACTTGATCACAGCCAAGGGTCTCACTAAGATCTATGAGG
ATTTTCCGCAGAAGTGCCAGTACAAAGGCAGAGGTCGTGAGATGTCGGGA
TCAGACTCGGATGAAGGACGACCGCGGCCGATCGGCGCAGAACAAGAGAG
CGAAGATGATGAAAGCGACCGGGAAGTGAACAGCAATGAAGATGGCGCGA
AATCAGCAGCGGCAGAAGGAGCGGCGGCGGCAGGGGCGGCCGCGCCAGGC
GAGGAGAAGAAAGCTTCCAAGAGAATCAAAATCCCTGCCTTCTCAGAGAA
CAACTTGATCACAGCCAAGGGTCTCACTAAGATCTATGAGGATTTTCCGC
AGAAGTGCCAGTACAAAGGCAGAGGTCGTGAGGCGGAGTTCTTGAGAGGT
TTAATGGTCGCCTACAAGGAATGGGGCTACCAGCTATACCGCGCTCTCGC
ATTTGAAGACTTGGCTAGTCGCACGGAGAAGCTGGGGGGAAAGGGACGCA
CACGGGAATTTTTGAGAGAGCTCCGCGACAAAGAGAGGGATCGCGTACTG
AAAGTTGAGGTTGGCAAATCCGCTAAGGATGACGTTCGTGCAGAGGAGGC
CGCAAATAGGGCGGACCAGGTCAATTCCGCTGATGGCGGTGACGTCGAGA
AGCAAAAGGACAGCGAGGAGGTCGAGACACGGCTCGCAAACAGTCGGTAC
ATGGACGTTGACGAAGAGGGAGAGGGAGAGAGAGAACACCCCAGCGATAA
GGGACCTGGATCAAGGTCAAAGTTTGCCGCAGCGCCTGTAGTAGGAGCTT
TATCGGTTGAGGTGCGAGCTCGCATGGAGGCCAATCGCCGCCTAGCGCTG
GAGCGGCTTCGCCGAAAAAAAGAGGAGGCGGCGTCGGCTTTGTCCACGTC
GTCCGCTGGGGCGATAGTAGGCAAGAGCATATCTGCGACACCATTGGCCG
CTGATATCATCGGCAAGGGGGTAACTGAAGATGATCTAATGCACCTGGAT
GCCGAGGAATTGAATGGTGAGCCACAAGACAATTTTGAAGATGATGAAGC
TGCTCTTGCGGAGATGGAAGCTGAGGAGCCGGCTACCAAAAAATCTAAGT
TATCCGTGGATACCGCTACTCCAGCAACGACATTGTTGGAATCAAACATT
TCTTGTTCACTCGATAAAACTTTTGCCCCAAAGATTTTTGAGGTACCATC
GCTCGCGGTGGACACACTCCCTGGCAGCACCGAGAGATCACCTGTTGACG
GTGACGGTGGTGCAACTCATGGATTATCGACAGCACCTACCGACGAAGCC
ACTGTCTCTGGCCGTACTGGCAATGGAGTGGTCGGTAAGGCTGTAGCGCC
CAAGCCAGAAGGTATTGATGAGGGTTCGACACCGACGGCGCACCCAGCAG
GTAGCGAATCTTCGAAACGGGAGACGACCGCCTCTAAAATGTGTATCCCT
GCTACTAGCGGCGATCAGGAAATCTATAAAGGCGATGTAAAGTCGGCGGA
GGCATTGACGGAAAAGGCAGCAAAGGCAGCAGCAGATGGTTCCAATGGGC
GTAAGGACAAGGGTATCAGTAGTAACACAGCAGCAGCGTTCGGGGTTATG
ACAGGTTCGGTCAAGAACGTTGGTGAAATTTTACTCGCCGTCAGTCCTCA
GAAATGCAAAGCTACAGAAAGTGAAGTGCCAATGTCGCCGCTTGGGCGAA
TGCTTGCCGACACCGATATCCCTGCTGAAGGTGGATCTTTAGCGGTGCGG
GTGCCCATAGCTGGACTATCTGCCGACAAACCATAGGCGGAGTTCTTGAG
AGGTTTAATGGTCGCCTACAAGGAATGGGGCTACCAGCTATACCGCGCTC
TCGCATTTGAAGACTTGGCTAGTCGCACGGAGAAGCTGGGGGGAAAGGGA
CGCACACGGGAATTTTTGAGAGAGCTCCGCGACAAAGAGAGGGATCGCGT
ACTGAAAGTTGAGGTTGGCAAATCCGCTAAGGATGACGTTCGTGCAGAGG
AGGCCGCAAATAGGGCGGACCAGGTCAATTCCGCTGATGGCGGTGACGTC
GAGAAGCAAAAGGACAGCGAGGAGGTCGAGACACGGCTCGCAAACAGTCG
GTACATGGACGTTGACGAAGAGGGAGAGGGAGAGAGAGAACACCCCAGCG
ATAAGGGACCTGGATCAAGGTCAAAGTTTGCCGCAGCGCCTGTAGTAGGA
GCTTTATCGGTTGAGGTGCGAGCTCGCATGGAGGCCAATCGCCGCCTAGC
GCTGGAGCGGCTTCGCCGAAAAAAAGAGGAGGCGGCGTCGGCTTTGTCCA
CGTCGTCCGCTGGGGCGATAGTAGGCAAGAGCATATCTGCGACACCATTG
GCCGCTGATATCATCGGCAAGGGGGTAACTGAAGATGATCTAATGCACCT
GGATGCCGAGGAATTGAATGGTGAGCCACAAGACAATTTTGAAGATGATG
AAGCTGCTCTTGCGGAGATGGAAGCTGAGGAGCCGGCTACCAAAAAATCT
AAGTTATCCGTGGATACCGCTACTCCAGCAACGACATTGTTGGAATCAAA
CATTTCTTGTTCACTCGATAAAACTTTTGCCCCAAAGATTTTTGAGGTAC
CATCGCTCGCGGTGGACACACTCCCTGGCAGCACCGAGAGATCACCTGTT
GACGGTGACGGTGGTGCAACTCATGGATTATCGACAGCACCTACCGACGA
AGCCACTGTCTCTGGCCGTACTGGCAATGGAGTGGTCGGTAAGGCTGTAG
CGCCCAAGCCAGAAGGTATTGATGAGGGTTCGACACCGACGGCGCACCCA
GCAGGTAGCGAATCTTCGAAACGGGAGACGACCGCCTCTAAAATGTGTAT
CCCTGCTACTAGCGGCGATCAGGAAATCTATAAAGGCGATGTAAAGTCGG
CGGAGGCATTGACGGAAAAGGCAGCAAAGGCAGCAGCAGATGGTTCCAAT
GGGCGTAAGGACAAGGGTATCAGTAGTAACACAGCAGCAGCGTTCGGGGT
TATGACAGGTTCGGTCAAGAACGTTGGTGAAATTTTACTCGCCGTCAGTC
CTCAGAAATGCAAAGCTACAGAAAGTGAAGTGCCAATGTCGCCGCTTGGG
CGAATGCTTGCCGACACCGATATCCCTGCTGAAGGTGGATCTTTAGCGGT
GCGGGTGCCCATAGCTGGACTATCTGCCGACAAACCATAG
back to top