mRNA_H-paniculata_contig78799.15898.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig78799.15898.1
Unique NamemRNA_H-paniculata_contig78799.15898.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig78799.15898.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 6.060e-37
Identity = 66/126 (52.38%), Postives = 88/126 (69.84%), Query Frame = 1
Query:   10 QFVGAKAFCTLDLLQGYWQCPIAEDAQELFTIVTDRGLFTPTRVPQGVVNETAYFQEMMGTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMAVGLFAAVHKAVFYTPTVHWCGMIYS 387
            Q   AK + +LDLLQ YWQCP+A +AQE+FTI T  GL+TP RVPQG++N T+YFQ  +  +L+GL    C V+VDDVV W  D+ +LL  LDL+L+RL   GL+ A HK  F+  ++ WCG +YS
Sbjct:  839 QLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYS 961          
BLAST of mRNA_H-paniculata_contig78799.15898.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 6.290e-35
Identity = 67/124 (54.03%), Postives = 83/124 (66.94%), Query Frame = 1
Query:   19 GAKAFCTLDLLQGYWQCPIAEDAQELFTIVTDRGLFTPTRVPQGVVNETAYFQEMMGTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMAVGLFAAVHKAVFYTPTVHWCGMIYSG 390
            GA  F  LDLLQGYWQ P+AE A+E+F+I T  GLF PTRVPQ V+N T YFQ +M  +L+GL    C V+VDD + W  DE +LL  LD +L RL   G+FAA HK  F+   + WCG +YSG
Sbjct:  495 GATCFGKLDLLQGYWQMPLAESAREIFSIATPEGLFEPTRVPQDVLNATGYFQAVMTEILQGLN---CAVWVDDDIWWGIDETDLLNTLDEILWRLQDNGIFAAAHKCPFFDTKIRWCGKVYSG 615          
BLAST of mRNA_H-paniculata_contig78799.15898.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 7.580e-34
Identity = 63/127 (49.61%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    7 QQFVGAKAFCTLDLLQGYWQCPIAEDAQELFTIVTDRGLFTPTRVPQGVVNETAYFQEMMGTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMAVGLFAAVHKAVFYTPTVHWCGMIYS 387
            Q+   A  + +LD+LQGYW  P+A +AQE+FT++   GL++P RVPQGV+N T+Y+Q  M ++L  L    C+V+VDD+V W E E +LL  LDL+L R    GLF A HK  FYT +V WCG +YS
Sbjct:  740 QRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKVYS 863          
BLAST of mRNA_H-paniculata_contig78799.15898.1 vs. uniprot
Match: A0A6G0SJ18_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SJ18_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.090e-30
Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   19 GAKAFCTLDLLQGYWQCPIAEDAQELFTIVTDRGLFTPTRVPQGVVNETAYFQEMMGTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMAVGLFAAVHKAVFYTPTVHWCGMIYSGTGVK 402
            GAK    LD  +GYWQ P+ ED+QELFT +T RG++TPTRVP G  +  AY Q ++  +  GL+G   L ++DD++ +AE + ELL  LD VL R  A GL     K  F+   V WCG + S  GV+
Sbjct:   31 GAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDILGYAESDDELLPLLDQVLARCEAYGLKLHAKKCEFFEIEVMWCGKMVSAAGVR 158          
BLAST of mRNA_H-paniculata_contig78799.15898.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.590e-30
Identity = 59/128 (46.09%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   19 GAKAFCTLDLLQGYWQCPIAEDAQELFTIVTDRGLFTPTRVPQGVVNETAYFQEMMGTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMAVGLFAAVHKAVFYTPTVHWCGMIYSGTGVK 402
            GAK    +D  +GYWQ P+ ED+QELFT +T RG++TPTRVP G  +  AY Q ++  +  GL+G   L ++DD+V +AE E ELL  LD VL R  A GL     K  F+   V WCG + S  GV+
Sbjct:  147 GAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTMLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVR 274          
BLAST of mRNA_H-paniculata_contig78799.15898.1 vs. uniprot
Match: H3H555_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H555_PHYRM)

HSP 1 Score: 120 bits (300), Expect = 7.070e-29
Identity = 57/128 (44.53%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   19 GAKAFCTLDLLQGYWQCPIAEDAQELFTIVTDRGLFTPTRVPQGVVNETAYFQEMMGTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMAVGLFAAVHKAVFYTPTVHWCGMIYSGTGVK 402
            GAK F  LD  +GYWQ P+  D+QE+++ VT RG++TPTRVP G  +  AY Q ++  +   L+G C L ++DD++ +AEDE  LL  LD VLER    GL     K  F+   V WCG + S  GV+
Sbjct:   31 GAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMGATDAVAYCQGVVEEIFGDLLGTCILAWLDDILGYAEDEASLLEVLDKVLERCEKFGLKLHAKKCQFFATEVKWCGRMISAQGVR 158          
BLAST of mRNA_H-paniculata_contig78799.15898.1 vs. uniprot
Match: H3H4S7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM)

HSP 1 Score: 120 bits (300), Expect = 7.330e-29
Identity = 57/128 (44.53%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   19 GAKAFCTLDLLQGYWQCPIAEDAQELFTIVTDRGLFTPTRVPQGVVNETAYFQEMMGTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMAVGLFAAVHKAVFYTPTVHWCGMIYSGTGVK 402
            GAK F  LD  +GYWQ P+  D+QE+++ VT RG++TPTRVP G  +  AY Q ++  +   L+G C L ++DD++ +AEDE  LL  LD VLER    GL     K  F+   V WCG + S  GV+
Sbjct:  759 GAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMGATDAVAYCQGVVEEIFGDLLGTCILAWLDDILGYAEDEASLLEVLDKVLERCEKFGLKLHAKKCQFFATEVKWCGRMISAQGVR 886          
BLAST of mRNA_H-paniculata_contig78799.15898.1 vs. uniprot
Match: A0A6A3YWA9_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YWA9_9STRA)

HSP 1 Score: 119 bits (299), Expect = 9.350e-29
Identity = 59/128 (46.09%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   19 GAKAFCTLDLLQGYWQCPIAEDAQELFTIVTDRGLFTPTRVPQGVVNETAYFQEMMGTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMAVGLFAAVHKAVFYTPTVHWCGMIYSGTGVK 402
            GAK    +D  +GYWQ P+ ED+QELFT +T RG++TPTRVP G  +  AY Q ++  +  GL+G   L ++DD+V +AE E ELL  LD VL R  A GL     K  F+   V WCG + S  GV+
Sbjct:  620 GAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTLLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVR 747          
BLAST of mRNA_H-paniculata_contig78799.15898.1 vs. uniprot
Match: H3H656_PHYRM (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H656_PHYRM)

HSP 1 Score: 119 bits (299), Expect = 9.650e-29
Identity = 57/128 (44.53%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   19 GAKAFCTLDLLQGYWQCPIAEDAQELFTIVTDRGLFTPTRVPQGVVNETAYFQEMMGTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMAVGLFAAVHKAVFYTPTVHWCGMIYSGTGVK 402
            GAK F  LD  +GYWQ P+  D+QE+++ VT RG++TPTRVP G  +  AY Q ++  +   L+G C L ++DD++ +AEDE  LL  LD VLER    GL     K  F+   V WCG + S  GV+
Sbjct:  757 GAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMGATDAVAYCQGVVEEIFGDLLGTCILAWLDDILGYAEDEASLLEVLDKVLERCEKFGLKLHAKKCQFFATEVKWCGRMTSAQGVR 884          
BLAST of mRNA_H-paniculata_contig78799.15898.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.320e-28
Identity = 59/128 (46.09%), Postives = 80/128 (62.50%), Query Frame = 1
Query:   19 GAKAFCTLDLLQGYWQCPIAEDAQELFTIVTDRGLFTPTRVPQGVVNETAYFQEMMGTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLERLMAVGLFAAVHKAVFYTPTVHWCGMIYSGTGVK 402
            GA+ F  LD  +GYWQ P+ ED+QELFT +T RG++TPTRVP G  +  AY Q ++  +   L+G   LV++DD++ +AE E ELL+ LD VL R  A GL     K  F+   V WCG + S  GV+
Sbjct:  541 GAQVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILVWLDDILGYAESEEELLQLLDQVLARCEAYGLKLHAKKCDFFEIEVKWCGKMVSAAGVR 668          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig78799.15898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE6.060e-3752.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L028_9PHAE6.290e-3554.03CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L7F6_9PHAE7.580e-3449.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6G0SJ18_9STRA1.090e-3045.31Reverse transcriptase domain-containing protein n=... [more]
A0A6G0NWQ3_9STRA1.590e-3046.09Reverse transcriptase domain-containing protein n=... [more]
H3H555_PHYRM7.070e-2944.53Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H4S7_PHYRM7.330e-2944.53Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3YWA9_9STRA9.350e-2946.09Reverse transcriptase domain-containing protein n=... [more]
H3H656_PHYRM9.650e-2944.53Reverse transcriptase domain-containing protein n=... [more]
A0A2P4WWJ1_9STRA1.320e-2846.09Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig78799contigH-paniculata_contig78799:158..559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue3.4e-25
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size402
Cds size402
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.718691-CDS-H-paniculata_contig78799:157..5591622930979.718691-CDS-H-paniculata_contig78799:157..559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78799 158..559 -
1691481536.4138412-CDS-H-paniculata_contig78799:157..5591691481536.4138412-CDS-H-paniculata_contig78799:157..559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78799 158..559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig78799.15898.1prot_H-paniculata_contig78799.15898.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig78799 158..559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig78799.15898.1

>prot_H-paniculata_contig78799.15898.1 ID=prot_H-paniculata_contig78799.15898.1|Name=mRNA_H-paniculata_contig78799.15898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MAQQFVGAKAFCTLDLLQGYWQCPIAEDAQELFTIVTDRGLFTPTRVPQG
VVNETAYFQEMMGTVLEGLVGRCCLVYVDDVVLWAEDEGELLRRLDLVLE
RLMAVGLFAAVHKAVFYTPTVHWCGMIYSGTGVK
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mRNA from alignment at H-paniculata_contig78799:158..559-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig78799.15898.1 ID=mRNA_H-paniculata_contig78799.15898.1|Name=mRNA_H-paniculata_contig78799.15898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at H-paniculata_contig78799:158..559- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCAGCAGTTCGTGGGGGCCAAGGCGTTCTGCACCCTCGATCTTCT GCAGGGGTACTGGCAATGCCCGATCGCTGAGGATGCCCAGGAGCTGTTCA CTATTGTCACGGACCGGGGGCTGTTCACCCCCACGCGCGTACCGCAGGGG GTGGTGAATGAAACCGCCTACTTCCAAGAGATGATGGGGACGGTGCTGGA GGGCCTGGTTGGACGCTGCTGCCTTGTTTACGTCGACGATGTGGTGTTGT GGGCCGAGGATGAGGGGGAGCTGCTGAGGCGCCTCGACCTGGTTCTGGAG CGGTTGATGGCGGTGGGGCTGTTCGCGGCGGTGCACAAAGCCGTGTTCTA CACCCCCACCGTCCACTGGTGTGGCATGATCTACTCGGGGACCGGCGTGA AG
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Coding sequence (CDS) from alignment at H-paniculata_contig78799:158..559-

>mRNA_H-paniculata_contig78799.15898.1 ID=mRNA_H-paniculata_contig78799.15898.1|Name=mRNA_H-paniculata_contig78799.15898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig78799:158..559- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCAGCAGTTCGTGGGGGCCAAGGCGTTCTGCACCCTCGATCTTCT
GCAGGGGTACTGGCAATGCCCGATCGCTGAGGATGCCCAGGAGCTGTTCA
CTATTGTCACGGACCGGGGGCTGTTCACCCCCACGCGCGTACCGCAGGGG
GTGGTGAATGAAACCGCCTACTTCCAAGAGATGATGGGGACGGTGCTGGA
GGGCCTGGTTGGACGCTGCTGCCTTGTTTACGTCGACGATGTGGTGTTGT
GGGCCGAGGATGAGGGGGAGCTGCTGAGGCGCCTCGACCTGGTTCTGGAG
CGGTTGATGGCGGTGGGGCTGTTCGCGGCGGTGCACAAAGCCGTGTTCTA
CACCCCCACCGTCCACTGGTGTGGCATGATCTACTCGGGGACCGGCGTGA
AGATGGCGCAGCAGTTCGTGGGGGCCAAGGCGTTCTGCACCCTCGATCTT
CTGCAGGGGTACTGGCAATGCCCGATCGCTGAGGATGCCCAGGAGCTGTT
CACTATTGTCACGGACCGGGGGCTGTTCACCCCCACGCGCGTACCGCAGG
GGGTGGTGAATGAAACCGCCTACTTCCAAGAGATGATGGGGACGGTGCTG
GAGGGCCTGGTTGGACGCTGCTGCCTTGTTTACGTCGACGATGTGGTGTT
GTGGGCCGAGGATGAGGGGGAGCTGCTGAGGCGCCTCGACCTGGTTCTGG
AGCGGTTGATGGCGGTGGGGCTGTTCGCGGCGGTGCACAAAGCCGTGTTC
TACACCCCCACCGTCCACTGGTGTGGCATGATCTACTCGGGGACCGGCGT
GAAG
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