mRNA_H-paniculata_contig78704.15893.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig78704.15893.1
Unique NamemRNA_H-paniculata_contig78704.15893.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig78704.15893.1 vs. uniprot
Match: A0A6B7EV91_9PHAE (Putative RuBisCO transcriptional regulator n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV91_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 1.790e-82
Identity = 130/153 (84.97%), Postives = 136/153 (88.89%), Query Frame = 1
Query:    1 MKYFPFSLKQLKLLQAIK--------IASKNFYLSQPPLSSQIKIFEHNLYSKILVRKKNQIYFTPEGELVLDYANKILKLCKEADNAIAFFKKLKRIRLKIGSNKIIGQKISFKLINLFCKRYPYAHVQLQIGCTKSISWDLINGKIDIGIV 435
            MKYFPFSLKQLK+LQAIK        IASKN YLSQP LSS+IKIF+HN YSKILVRKKNQIYFT EGELVLDYANKILKLCKEADNAIAFFKKLKR RLKIGSNK IG+ I  KLINLFCKRYPYAHVQLQIGCTKS+SWDL+NGKIDIGIV
Sbjct:    1 MKYFPFSLKQLKVLQAIKNEGNINIKIASKNLYLSQPTLSSKIKIFQHNPYSKILVRKKNQIYFTSEGELVLDYANKILKLCKEADNAIAFFKKLKRFRLKIGSNKTIGKNILLKLINLFCKRYPYAHVQLQIGCTKSLSWDLVNGKIDIGIV 153          
BLAST of mRNA_H-paniculata_contig78704.15893.1 vs. uniprot
Match: A0A6B7IJB9_9PHAE (Probable RuBisCO transcriptional regulator n=4 Tax=Scytosiphon TaxID=27966 RepID=A0A6B7IJB9_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.560e-57
Identity = 97/151 (64.24%), Postives = 117/151 (77.48%), Query Frame = 1
Query:    1 MKYFPFSLKQLKLLQAIK------IASKNFYLSQPPLSSQIKIFEHNLYSKILVRKKNQIYFTPEGELVLDYANKILKLCKEADNAIAFFKKLKRIRLKIGSNKIIGQKISFKLINLFCKRYPYAHVQLQIGCTKSISWDLINGKIDIGIV 435
            MK F F+L+QLK+LQ +K       A+K  YLSQP LS QIK  E NLYSKIL RKK QIYFTPEGEL+LDYAN IL+LC+E D A+ + KK +R  L++GS+KIIG+ IS KLI+LF KRYPY  VQL+I  T+SISWD++NGKIDIGIV
Sbjct:    1 MKNFSFNLEQLKILQTLKNEGNLTTAAKILYLSQPALSLQIKSLEKNLYSKILRRKKKQIYFTPEGELILDYANNILQLCEEVDRAVLYLKKFRRFSLRVGSDKIIGESISLKLIDLFSKRYPYVVVQLKISSTQSISWDIVNGKIDIGIV 151          
BLAST of mRNA_H-paniculata_contig78704.15893.1 vs. uniprot
Match: A0A5A4MHG3_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Hapterophycus canaliculatus TaxID=2567908 RepID=A0A5A4MHG3_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 4.410e-57
Identity = 95/151 (62.91%), Postives = 117/151 (77.48%), Query Frame = 1
Query:    1 MKYFPFSLKQLKLLQAIK------IASKNFYLSQPPLSSQIKIFEHNLYSKILVRKKNQIYFTPEGELVLDYANKILKLCKEADNAIAFFKKLKRIRLKIGSNKIIGQKISFKLINLFCKRYPYAHVQLQIGCTKSISWDLINGKIDIGIV 435
            MK F F+L+QLK++QA+K        +K  YLSQP LS QIK  E NLYSKIL+RKK QIYFTPEGEL+LDYANKIL+LC+E D A+   K  K+  L++GS+K IG+ IS KLI+LF KRYPY HVQL+I  T++ISW++INGKIDIGIV
Sbjct:    1 MKNFSFNLEQLKIIQAVKNEGNLKTVAKFLYLSQPALSLQIKNLEENLYSKILIRKKKQIYFTPEGELILDYANKILELCEEVDKAVLCLKNFKKFSLRVGSDKSIGEYISIKLIDLFSKRYPYTHVQLKISSTQNISWEIINGKIDIGIV 151          
BLAST of mRNA_H-paniculata_contig78704.15893.1 vs. uniprot
Match: D1J7C3_ECTSI (Probable RuBisCO transcriptional regulator n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7C3_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.980e-54
Identity = 86/151 (56.95%), Postives = 121/151 (80.13%), Query Frame = 1
Query:    1 MKYFPFSLKQLKLLQAIK------IASKNFYLSQPPLSSQIKIFEHNLYSKILVRKKNQIYFTPEGELVLDYANKILKLCKEADNAIAFFKKLKRIRLKIGSNKIIGQKISFKLINLFCKRYPYAHVQLQIGCTKSISWDLINGKIDIGIV 435
            MK F F+L+QLK++Q IK      I +K+  LSQP +S Q+K  + ++YSKIL+RKKN+IYFTPEGELVLDYANK+L+LC+EAD AI + K +K+  L IGSNK++G+ +S K+I +FC+RY Y+HV+L+I C KS+SW++ING++DIGI+
Sbjct:    1 MKDFSFTLRQLKVIQTIKTEGNVKITAKHLKLSQPAVSLQLKQLQQDIYSKILIRKKNEIYFTPEGELVLDYANKVLRLCEEADKAILYLKTIKKFTLIIGSNKMLGKYLSSKIIEIFCRRYSYSHVKLKICCDKSLSWNIINGRVDIGIL 151          
BLAST of mRNA_H-paniculata_contig78704.15893.1 vs. uniprot
Match: A0A8F0F9M1_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9M1_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 6.870e-53
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 1
Query:    1 MKYFPFSLKQLKLLQAIKI------ASKNFYLSQPPLSSQIKIFEHNLYSKILVRKKNQIYFTPEGELVLDYANKILKLCKEADNAIAFFKKLKRIRLKIGSNKIIGQKISFKLINLFCKRYPYAHVQLQIGCTKSISWDLINGKIDIGIV 435
            MKY PFSL+QL+ +Q IK       A+K  YLSQP LS QIK  E  + S IL RKK +IYFT  GEL+LDYA+KIL LC+EAD AI +FK LKRI L IGSN  IG+ I  K+INLFCKRY YAH++L+I  T +I+WD+INGKIDIGIV
Sbjct:    1 MKYLPFSLEQLRTIQTIKNEGTVKQAAKKLYLSQPALSLQIKKLESGIKSPILDRKKRKIYFTRTGELILDYADKILNLCEEADKAILYFKNLKRISLNIGSNYTIGKYILPKIINLFCKRYSYAHIKLEISDTNTIAWDIINGKIDIGIV 151          
BLAST of mRNA_H-paniculata_contig78704.15893.1 vs. uniprot
Match: A0A0R6LUS1_UNDPI (Probable RuBisCO transcriptional regulator n=29 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUS1_UNDPI)

HSP 1 Score: 177 bits (448), Expect = 2.900e-52
Identity = 90/151 (59.60%), Postives = 116/151 (76.82%), Query Frame = 1
Query:    1 MKYFPFSLKQLKLLQAIKI------ASKNFYLSQPPLSSQIKIFEHNLYSKILVRKKNQIYFTPEGELVLDYANKILKLCKEADNAIAFFKKLKRIRLKIGSNKIIGQKISFKLINLFCKRYPYAHVQLQIGCTKSISWDLINGKIDIGIV 435
            MKYFPFSL+QL+++QAIK       A+K  YLSQP LS QI+  E+ + S IL R+K QIYFT  GEL+LDYA++IL+LC+EAD AI + KKLKRI L IGSN+I+G  I  K+I+LFC+RY Y HV+L+I  T  ISW+++NGK+DIGIV
Sbjct:    1 MKYFPFSLEQLRIIQAIKNEATIKQAAKRLYLSQPALSLQIQKLEYEIDSPILDRRKKQIYFTFTGELILDYADRILRLCEEADKAIVYLKKLKRISLTIGSNEIVGTYILPKIIDLFCRRYSYIHVKLEIDSTNCISWNIVNGKVDIGIV 151          
BLAST of mRNA_H-paniculata_contig78704.15893.1 vs. uniprot
Match: A0A1I9LVC7_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVC7_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 6.360e-51
Identity = 88/151 (58.28%), Postives = 110/151 (72.85%), Query Frame = 1
Query:    1 MKYFPFSLKQLKLLQAIK------IASKNFYLSQPPLSSQIKIFEHNLYSKILVRKKNQIYFTPEGELVLDYANKILKLCKEADNAIAFFKKLKRIRLKIGSNKIIGQKISFKLINLFCKRYPYAHVQLQIGCTKSISWDLINGKIDIGIV 435
            M+   F+LKQLK++Q IK      + +K  YLSQ  L +QIK  E N YSKIL+RKKNQ+Y T EGEL+LDYA KIL LC E D AI + KK+K+  LKIGS K IG+  S KLI+LFCKRY Y ++QLQI  T+ ISWD++NG+ID+GIV
Sbjct:    1 MEDLSFNLKQLKIIQRIKTEVNINLTAKKLYLSQSSLIAQIKNLEQNTYSKILIRKKNQLYLTNEGELILDYAKKILALCTETDKAILYLKKIKKFSLKIGSTKTIGKSFSLKLIDLFCKRYYYTNIQLQIYFTEKISWDILNGRIDMGIV 151          
BLAST of mRNA_H-paniculata_contig78704.15893.1 vs. uniprot
Match: A0A8F0F6V8_AKKLU (Probable RuBisCO transcriptional regulator n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F6V8_AKKLU)

HSP 1 Score: 172 bits (437), Expect = 1.300e-50
Identity = 87/151 (57.62%), Postives = 112/151 (74.17%), Query Frame = 1
Query:    1 MKYFPFSLKQLKLLQAIKI------ASKNFYLSQPPLSSQIKIFEHNLYSKILVRKKNQIYFTPEGELVLDYANKILKLCKEADNAIAFFKKLKRIRLKIGSNKIIGQKISFKLINLFCKRYPYAHVQLQIGCTKSISWDLINGKIDIGIV 435
            MKYFPF+L+QL+++QAIK       A+   YLSQP LS QI+  E+ + S IL R K QIY T  GEL+LDYA++IL LC+EAD AI + KKLKRI L IG+N+ +G  I  K+INLFCKRYPY  ++L+I CT  ISW+++NGKID+GIV
Sbjct:    1 MKYFPFNLEQLRIIQAIKTEATIKQAATKLYLSQPALSLQIQKLEYEIDSPILDRNKKQIYLTLTGELLLDYADRILSLCEEADKAIIYLKKLKRISLTIGTNETVGTYILPKIINLFCKRYPYTRIKLEIHCTNCISWNIVNGKIDLGIV 151          
BLAST of mRNA_H-paniculata_contig78704.15893.1 vs. uniprot
Match: A0A8F0F7X1_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0F7X1_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 5.210e-50
Identity = 86/151 (56.95%), Postives = 111/151 (73.51%), Query Frame = 1
Query:    1 MKYFPFSLKQLKLLQA------IKIASKNFYLSQPPLSSQIKIFEHNLYSKILVRKKNQIYFTPEGELVLDYANKILKLCKEADNAIAFFKKLKRIRLKIGSNKIIGQKISFKLINLFCKRYPYAHVQLQIGCTKSISWDLINGKIDIGIV 435
            MKYFPFSL+QL+++QA      IK A+K  YLSQP LS QI+  E+ + S IL R K QIY T  GEL+LDYA++IL LC+EAD AI + KKLKR+ L IG+N+ +G  I  K+INLFC RYPY  ++L+I C   ISW+++NGKID+GIV
Sbjct:    1 MKYFPFSLEQLRIVQAVKNEATIKQAAKKLYLSQPALSLQIQKLEYEIDSPILDRNKKQIYLTLTGELLLDYADRILNLCEEADKAIIYLKKLKRVSLTIGTNETVGTYILPKIINLFCTRYPYTRIKLEINCANCISWNIVNGKIDLGIV 151          
BLAST of mRNA_H-paniculata_contig78704.15893.1 vs. uniprot
Match: A0A344PFD9_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PFD9_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 7.580e-47
Identity = 83/151 (54.97%), Postives = 111/151 (73.51%), Query Frame = 1
Query:    1 MKYFPFSLKQLKLLQAIK------IASKNFYLSQPPLSSQIKIFEHNLYSKILVRKKNQIYFTPEGELVLDYANKILKLCKEADNAIAFFKKLKRIRLKIGSNKIIGQKISFKLINLFCKRYPYAHVQLQIGCTKSISWDLINGKIDIGIV 435
            MK F F+L+QLK++Q +K       A+K  YLSQP LS QIK  E NL +KIL+RK  ++YFT EGEL+L+YA KILKLC+E D+AI   KK K+  L+IGS+K IG+ I  KLI+LF KRY Y  ++L+I  T+++SW ++NGK+DIGIV
Sbjct:    1 MKKFSFTLEQLKIIQTLKNQGNLTTAAKFLYLSQPALSLQIKTLEKNLDAKILIRKNKELYFTSEGELILNYALKILKLCEEVDSAILRLKKFKKFSLRIGSDKSIGESILLKLIDLFSKRYSYVLIELKISSTQNVSWGIVNGKLDIGIV 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig78704.15893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EV91_9PHAE1.790e-8284.97Putative RuBisCO transcriptional regulator n=1 Tax... [more]
A0A6B7IJB9_9PHAE1.560e-5764.24Probable RuBisCO transcriptional regulator n=4 Tax... [more]
A0A5A4MHG3_9PHAE4.410e-5762.91Probable RuBisCO transcriptional regulator n=1 Tax... [more]
D1J7C3_ECTSI1.980e-5456.95Probable RuBisCO transcriptional regulator n=2 Tax... [more]
A0A8F0F9M1_9PHAE6.870e-5362.25Probable RuBisCO transcriptional regulator n=1 Tax... [more]
A0A0R6LUS1_UNDPI2.900e-5259.60Probable RuBisCO transcriptional regulator n=29 Ta... [more]
A0A1I9LVC7_9PHAE6.360e-5158.28Probable RuBisCO transcriptional regulator n=1 Tax... [more]
A0A8F0F6V8_AKKLU1.300e-5057.62Probable RuBisCO transcriptional regulator n=1 Tax... [more]
A0A8F0F7X1_9PHAE5.210e-5056.95Probable RuBisCO transcriptional regulator n=1 Tax... [more]
A0A344PFD9_9PHAE7.580e-4754.97Probable RuBisCO transcriptional regulator n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig78704contigH-paniculata_contig78704:6..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1.3e-43
Seed eggNOG ortholog2880.D1J7C3
Preferred namerbcR
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.DNA-binding transcription factor activity
EggNOG OGs2S17Z@2759,COG0583@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size435
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.2302148-CDS-H-paniculata_contig78704:5..4401622930979.2302148-CDS-H-paniculata_contig78704:5..440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78704 6..440 -
1691481536.2236853-CDS-H-paniculata_contig78704:5..4401691481536.2236853-CDS-H-paniculata_contig78704:5..440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78704 6..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig78704.15893.1prot_H-paniculata_contig78704.15893.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig78704 6..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig78704.15893.1

>prot_H-paniculata_contig78704.15893.1 ID=prot_H-paniculata_contig78704.15893.1|Name=mRNA_H-paniculata_contig78704.15893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MKYFPFSLKQLKLLQAIKIASKNFYLSQPPLSSQIKIFEHNLYSKILVRK
KNQIYFTPEGELVLDYANKILKLCKEADNAIAFFKKLKRIRLKIGSNKII
GQKISFKLINLFCKRYPYAHVQLQIGCTKSISWDLINGKIDIGIV
back to top

mRNA from alignment at H-paniculata_contig78704:6..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig78704.15893.1 ID=mRNA_H-paniculata_contig78704.15893.1|Name=mRNA_H-paniculata_contig78704.15893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig78704:6..440- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATATTTTCCGTTTAGCTTAAAACAATTAAAACTTCTTCAAGCAAT AAAAATTGCAAGTAAAAATTTTTATTTGTCACAACCACCTTTAAGCTCAC AGATTAAAATATTTGAGCATAATCTTTATTCAAAAATTTTAGTGCGAAAA AAAAACCAAATTTATTTTACTCCTGAAGGAGAACTAGTTTTAGATTATGC TAATAAAATTTTAAAGTTATGTAAAGAGGCTGATAATGCTATTGCATTTT TTAAAAAACTTAAAAGAATTCGATTAAAAATTGGTTCTAATAAAATAATA GGACAAAAAATATCATTCAAACTTATTAATTTATTTTGTAAACGTTACCC ATATGCTCATGTTCAGTTACAAATAGGTTGTACTAAAAGTATATCTTGGG ATTTAATTAACGGGAAAATTGATATAGGGATTGTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig78704:6..440-

>mRNA_H-paniculata_contig78704.15893.1 ID=mRNA_H-paniculata_contig78704.15893.1|Name=mRNA_H-paniculata_contig78704.15893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig78704:6..440- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATATTTTCCGTTTAGCTTAAAACAATTAAAACTTCTTCAAGCAAT
AAAAATTGCAAGTAAAAATTTTTATTTGTCACAACCACCTTTAAGCTCAC
AGATTAAAATATTTGAGCATAATCTTTATTCAAAAATTTTAGTGCGAAAA
AAAAACCAAATTTATTTTACTCCTGAAGGAGAACTAGTTTTAGATTATGC
TAATAAAATTTTAAAGTTATGTAAAGAGGCTGATAATGCTATTGCATTTT
TTAAAAAACTTAAAAGAATTCGATTAAAAATTGGTTCTAATAAAATAATA
GGACAAAAAATATCATTCAAACTTATTAATTTATTTTGTAAACGTTACCC
ATATGCTCATGTTCAGTTACAAATAGGTTGTACTAAAAGTATATCTTGGG
ATTTAATTAACGGGAAAATTGATATAGGGATTGTAATGAAATATTTTCCG
TTTAGCTTAAAACAATTAAAACTTCTTCAAGCAATAAAAATTGCAAGTAA
AAATTTTTATTTGTCACAACCACCTTTAAGCTCACAGATTAAAATATTTG
AGCATAATCTTTATTCAAAAATTTTAGTGCGAAAAAAAAACCAAATTTAT
TTTACTCCTGAAGGAGAACTAGTTTTAGATTATGCTAATAAAATTTTAAA
GTTATGTAAAGAGGCTGATAATGCTATTGCATTTTTTAAAAAACTTAAAA
GAATTCGATTAAAAATTGGTTCTAATAAAATAATAGGACAAAAAATATCA
TTCAAACTTATTAATTTATTTTGTAAACGTTACCCATATGCTCATGTTCA
GTTACAAATAGGTTGTACTAAAAGTATATCTTGGGATTTAATTAACGGGA
AAATTGATATAGGGATTGTA
back to top