mRNA_H-paniculata_contig7866.15886.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7866.15886.1
Unique NamemRNA_H-paniculata_contig7866.15886.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7866.15886.1 vs. uniprot
Match: K0R3K3_THAOC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R3K3_THAOC)

HSP 1 Score: 67.8 bits (164), Expect = 1.130e-9
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  115 LCSVIVHSGSGVSSGHYFSYVRTAADEWLLMNDRVVTKVDLNEVLKVQAYILVY 276
            L +V+VH G     GHYF+YVR   D W L ND VVTKVD++EVLK QAY+LVY
Sbjct:  486 LVAVLVHRGRSCDRGHYFAYVRKGKD-WYLCNDSVVTKVDVSEVLKSQAYVLVY 538
[Close]
BLAST of mRNA_H-paniculata_contig7866.15886.1 vs. uniprot
Match: A0A8J1JL48_XENTR (ubiquitin carboxyl-terminal hydrolase 17-like protein D n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A8J1JL48_XENTR)

HSP 1 Score: 64.3 bits (155), Expect = 1.770e-9
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:  115 LCSVIVHSGSGVSSGHYFSYVRTAADEWLLMNDRVVTKVDLNEVLKVQAYILVYCRDH 288
            L +V+VH+G+  +SGHY+ YV+    +W  MND  VT VD+N VLK++AY+L Y R +
Sbjct:   60 LYAVLVHAGNTCNSGHYYCYVQAPNSKWYKMNDDCVTPVDINTVLKLEAYLLFYIRSN 117
[Close]
BLAST of mRNA_H-paniculata_contig7866.15886.1 vs. uniprot
Match: B5YMR5_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMR5_THAPS)

HSP 1 Score: 67.0 bits (162), Expect = 2.230e-9
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:  121 SVIVHSGSGVSSGHYFSYVRTAADEWLLMNDRVVTKVDLNEVLKVQAYILVYCRDHAREK 300
            +V+VH G     GHYF+YVR   D W L ND VVTKVD++EVL  QAY+LVY  +  +EK
Sbjct:  456 AVLVHRGRSCDCGHYFAYVRKGQD-WYLANDAVVTKVDVDEVLSAQAYVLVYEVEGMKEK 514
[Close]
BLAST of mRNA_H-paniculata_contig7866.15886.1 vs. uniprot
Match: F7CHL5_XENTR (USP domain-containing protein n=2 Tax=Xenopus tropicalis TaxID=8364 RepID=F7CHL5_XENTR)

HSP 1 Score: 63.9 bits (154), Expect = 1.590e-8
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  115 LCSVIVHSGSGVSSGHYFSYVRTAADEWLLMNDRVVTKVDLNEVLKVQAYILVYCR 282
            L +V+VH+G+  +SGHY+ YV+    +W  MND  VT VD+N VLK++AY+L Y R
Sbjct:  273 LYAVLVHAGNTCNSGHYYCYVQAPNSKWYKMNDDCVTPVDINTVLKLEAYLLFYIR 328
[Close]
BLAST of mRNA_H-paniculata_contig7866.15886.1 vs. uniprot
Match: A0A6I8T1J7_XENTR (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A6I8T1J7_XENTR)

HSP 1 Score: 63.9 bits (154), Expect = 1.820e-8
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  115 LCSVIVHSGSGVSSGHYFSYVRTAADEWLLMNDRVVTKVDLNEVLKVQAYILVYCR 282
            L +V+VH+G+  +SGHY+ YV+    +W  MND  VT VD+N VLK++AY+L Y R
Sbjct:  258 LYAVLVHAGNTCNSGHYYCYVQAPNSKWYKMNDDCVTPVDINTVLKLEAYLLFYIR 313
[Close]
BLAST of mRNA_H-paniculata_contig7866.15886.1 vs. uniprot
Match: A0A8B9N664_9AVES (USP domain-containing protein n=1 Tax=Accipiter nisus TaxID=211598 RepID=A0A8B9N664_9AVES)

HSP 1 Score: 62.0 bits (149), Expect = 8.210e-8
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  112 ALCSVIVHSGSGVSSGHYFSYVRTAADEWLLMNDRVVTKVDLNEVLKVQAYILVYCRDHAR 294
            +L +V+VHSG+G  SGHYF Y + +   W  MND  V   D++ VL+ QAY+L Y RD  R
Sbjct:  253 SLYAVLVHSGNGCHSGHYFCYTKASNGLWYEMNDSSVEDCDISTVLQQQAYLLFYVRDFLR 313
[Close]
BLAST of mRNA_H-paniculata_contig7866.15886.1 vs. uniprot
Match: A0A072U6X5_MEDTR (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A072U6X5_MEDTR)

HSP 1 Score: 61.2 bits (147), Expect = 1.890e-7
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  115 LCSVIVHSGSGVSSGHYFSYVRTAADEWLLMNDRVVTKVDLNEVLKVQAYILVYCR 282
            L +V+VH+G   +SGHYFS+VRTA D W  ++D +VT V    VL  +AYIL Y R
Sbjct:  370 LYAVVVHTGFSSTSGHYFSFVRTAPDTWHKLDDSMVTMVSEETVLSQEAYILFYAR 425
[Close]
BLAST of mRNA_H-paniculata_contig7866.15886.1 vs. uniprot
Match: UPI00053CB491 (ubiquitin carboxyl-terminal hydrolase 42-like n=1 Tax=Haliaeetus leucocephalus TaxID=52644 RepID=UPI00053CB491)

HSP 1 Score: 60.5 bits (145), Expect = 2.650e-7
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:  112 ALCSVIVHSGSGVSSGHYFSYVRTAADEWLLMNDRVVTKVDLNEVLKVQAYILVYCRDHARE 297
            +L +V+VHSG+G  SGHYF Y + +   W  MND  V   D++ VL+ QAY+L Y R+ +++
Sbjct:  283 SLYAVLVHSGNGCHSGHYFCYTKASNGLWYEMNDSSVDPCDISTVLQQQAYLLFYVRNRSKK 344
[Close]
BLAST of mRNA_H-paniculata_contig7866.15886.1 vs. uniprot
Match: A0A8H7S4K0_9FUNG (USP domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S4K0_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 3.350e-7
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:  115 LCSVIVHSGSGVSSGHYFSYVRTAADEWLLMNDRVVTKVDLNEVLKVQAYILVYCRD 285
            L  V+VH G   +SGHY+SYV+ +  +W  M+D +V K  L EVL  QAYIL Y ++
Sbjct:  370 LYGVLVHLGHSCNSGHYYSYVKNSDGQWYQMDDEMVEKASLKEVLSQQAYILFYAQE 426
[Close]
BLAST of mRNA_H-paniculata_contig7866.15886.1 vs. uniprot
Match: M1BII9_SOLTU (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Solanum tuberosum TaxID=4113 RepID=M1BII9_SOLTU)

HSP 1 Score: 59.7 bits (143), Expect = 5.920e-7
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  115 LCSVIVHSGSGVSSGHYFSYVRTAADEWLLMNDRVVTKVDLNEVLKVQAYILVYCR 282
            L ++IVHSG  +SSGHY+S++R A +EW   ND  V  V+ + VL  +AYI+ Y R
Sbjct:  363 LYAIIVHSGPSISSGHYYSFIRCAPNEWYKFNDEQVVFVEEDFVLAQEAYIVFYAR 418
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7866.15886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K0R3K3_THAOC1.130e-961.11Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Thal... [more]
A0A8J1JL48_XENTR1.770e-948.28ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
B5YMR5_THAPS2.230e-955.00Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
F7CHL5_XENTR1.590e-850.00USP domain-containing protein n=2 Tax=Xenopus trop... [more]
A0A6I8T1J7_XENTR1.820e-850.00Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Xeno... [more]
A0A8B9N664_9AVES8.210e-847.54USP domain-containing protein n=1 Tax=Accipiter ni... [more]
A0A072U6X5_MEDTR1.890e-751.79Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Medi... [more]
UPI00053CB4912.650e-743.55ubiquitin carboxyl-terminal hydrolase 42-like n=1 ... [more]
A0A8H7S4K0_9FUNG3.350e-747.37USP domain-containing protein n=1 Tax=Mucor circin... [more]
M1BII9_SOLTU5.920e-748.21Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Sola... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7866contigH-paniculata_contig7866:2435..5817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue2.8e-09
Seed eggNOG ortholog2880.D8LD98
KEGG koko:K11855
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0016787,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0101005,GO:0140096
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons5
Model size627
Cds size555
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.5744786-UTR-H-paniculata_contig7866:2434..24761622930978.5744786-UTR-H-paniculata_contig7866:2434..2476Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7866 2435..2476 -
1691481535.920064-UTR-H-paniculata_contig7866:2434..24761691481535.920064-UTR-H-paniculata_contig7866:2434..2476Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7866 2435..2476 -
1622930978.691366-UTR-H-paniculata_contig7866:5787..58171622930978.691366-UTR-H-paniculata_contig7866:5787..5817Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7866 5788..5817 -
1691481535.9948034-UTR-H-paniculata_contig7866:5787..58171691481535.9948034-UTR-H-paniculata_contig7866:5787..5817Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7866 5788..5817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.5936365-CDS-H-paniculata_contig7866:2476..26081622930978.5936365-CDS-H-paniculata_contig7866:2476..2608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7866 2477..2608 -
1691481535.9313815-CDS-H-paniculata_contig7866:2476..26081691481535.9313815-CDS-H-paniculata_contig7866:2476..2608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7866 2477..2608 -
1622930978.617191-CDS-H-paniculata_contig7866:3115..31931622930978.617191-CDS-H-paniculata_contig7866:3115..3193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7866 3116..3193 -
1691481535.9425142-CDS-H-paniculata_contig7866:3115..31931691481535.9425142-CDS-H-paniculata_contig7866:3115..3193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7866 3116..3193 -
1622930978.6376207-CDS-H-paniculata_contig7866:3571..36491622930978.6376207-CDS-H-paniculata_contig7866:3571..3649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7866 3572..3649 -
1691481535.9603534-CDS-H-paniculata_contig7866:3571..36491691481535.9603534-CDS-H-paniculata_contig7866:3571..3649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7866 3572..3649 -
1622930978.654507-CDS-H-paniculata_contig7866:4028..40951622930978.654507-CDS-H-paniculata_contig7866:4028..4095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7866 4029..4095 -
1691481535.9720485-CDS-H-paniculata_contig7866:4028..40951691481535.9720485-CDS-H-paniculata_contig7866:4028..4095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7866 4029..4095 -
1622930978.6783082-CDS-H-paniculata_contig7866:5587..57871622930978.6783082-CDS-H-paniculata_contig7866:5587..5787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7866 5588..5787 -
1691481535.983172-CDS-H-paniculata_contig7866:5587..57871691481535.983172-CDS-H-paniculata_contig7866:5587..5787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7866 5588..5787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7866.15886.1prot_H-paniculata_contig7866.15886.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7866 2477..5787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7866.15886.1

>prot_H-paniculata_contig7866.15886.1 ID=prot_H-paniculata_contig7866.15886.1|Name=mRNA_H-paniculata_contig7866.15886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MTYKFSVLCADARKKVPLTVIRVFVSCALCSVIVHSGSGVSSGHYFSYVR
TAADEWLLMNDRVVTKVDLNEVLKVQAYILVYCRDHAREKRIRDLKDRSA
FAIQKTWARSCFRAKIAARALARGAAKAIAARRRLREAAEEARLRTADID
ERSGQKQEAVKLGMALAFQGWWRRLGAMQRLAVG*
back to top

mRNA from alignment at H-paniculata_contig7866:2435..5817-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7866.15886.1 ID=mRNA_H-paniculata_contig7866.15886.1|Name=mRNA_H-paniculata_contig7866.15886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3383bp|location=Sequence derived from alignment at H-paniculata_contig7866:2435..5817- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGCACGCGTTGCGTCACACCTTCGTGTGATGACATATAAATTCTCAGT
GTTATGTGCAGATGCGCGTAAAAAGGTGCCCCTCACTGTAATACGTGTTT
TCGTTTCTTGTGCGCTTTGCAGTGTGATCGTACACAGTGGGTCGGGTGTG
AGTAGTGGACACTACTTCTCCTATGTCCGCACGGCTGCGGATGAGTGGCT
CCTCATGAACGACCGTGTCGTCACTAAGGTAAGAAACTAACTAAATGAGG
TCAAACGAATTAGGTGTACGTTCTTAGATAGAAAGCCAGCCAGCTACTGT
ACCGGCGCACTGGATGTGAACCCTCGGGTACGGTATATGTGACATACCAT
GTGAGTTTTTTTCAGGGGTTTTTGTCGGAGGGAGTACGCTAGGCTCACTT
GAAGAAGCGGTACGGGACGAGATCCCGTTCCGTGCTTCCATGACAATCCC
TGCTTTTTTTGCTACTTGTATCCTCATATGAGCTGGACCCATCGTTGTAG
ATCAATAGCACCCAACGGACCGAGTAAATACGAACCAGTCGATTCCGCGA
TGCAATAATGGGGTAGCTAGCAACCGTCGAGTACGCGGCGCGTTTGATCG
GTCGTCTGTCTAGTGTTCTTTTTAGCATTTCACCCCAATACCATTGTCGT
ATGTACGGCCTATTCGCGGCGACCAGAGAATACGTAGGTAGAACATCGAA
AATGCGTGAGGTATTTCATGTCTGATTGTACTAGAACGCTCTGTGCGTAC
TTTTGACGCGATTGCAAGAGGAACGATGTTCGTTTTCGACTTCCAACACA
TGACCGTAGACACGCAAAGTCAGAACAACTACACTATGTGGAACAATATT
CTCCTGAAACGTAATTGCATTTGGACGTCCTTATACAATTTTTACAGGGT
GGATTTCATTTTTTGGGTAGATGGGCGTATTATACATCCAGAGGCGGTCA
TGGAGAGAGTCTCACGTCGCTGTTGTTCCGATTTTATTAACATTTCACCA
TATTCTCAGCGTTTGTACTCAGTGAAAAGCGAATTGCCCAAAAGTTGATC
GAACAGGCATTCGCATTTCAGTGTCGGGTTTCGGCCTGCGGAACTTTTGA
AAAGCCAAAGCACATCATTAATACCGACGATTTCGCACTTTTTTGTATTT
CATCATTTTCGTTCTGCAGGTATGGGCGGCTCTTCAAGCATCAGCATCCT
GGGTCCCTCCTTGAAATCTGCAAAAGAGAAAAAGGCTTCCTCAGCGAAGA
TGTCAGAGTTTGCGATGCGATCATCTTTTAGAACGTGAACATTGAGATCA
ACATTTCCCCAACTGAAATATGAATCCCCGTTTTGTCCTTGACTCAGTTT
GTAGCTCTGGCTCACCTCTTAAACGCCAAGATGTGCAATATTCGATATTA
TGTCTTTTCCATCTACAGCACCCCCCCGCGGCCGCGGCTTCTGAGAAGTC
GAGGTTTGTTGTAGGTCGGATGGTTGAAACATATTCTCGTGGTCACCTTG
GGCAGAGATGAAGGCTGCGATCGCAATCTCTCGTATGGGACCAAATCTTC
TTTCTCTCGACGACGCACGGTCGACGGTCACTGTGTCCACACGCAAAATA
CGCCACTACCGTCCATGATACCGTTTCCTTATAGAGTACTAACCCTTCCC
GCTCCCCGACCGCACACTCTCTGCTCTCTGCTGTCTGTGGCCCTCCACCA
ACCACATCTCCTGTGAAAACGTCGACTTAAACGAAGTCCTCAAAGTCCAG
GCGTACATACTCGTATACTGCCGAGATCATGCGAGAGAGGTGGGTCGTTG
TTGTTTATTGTACTTCGTGATAAGTTGTGTATCATTGAACCTTCGCCTCG
TGTGGACAGCGAACACAGTGCTTAAAAATGAAGAGTCAAACACAAACAGT
CTACTCTCGATTCGGTAAACCTAGGAACAGCCGCAGTTGGTTGTAGTTCT
AGCCCGTCCAAGAAGGTTTTGGAGTGTATTGCGTGCATATGTTAAGCAGC
GTGATATATGTAGCCAAGCCATACCGCTCTAGCGTACATGCAGGTACCCT
TGTTACAAATATGCTCATGAGTACACCTAGCCGGAGTTGCACTTGACATG
CCGTAATCTTAGCATGCACGTATACTGAACTCGCCGTAAATCGTCGCGAA
TCTGAACAATTCCTACAGAAACGGATCAGGGACCTCAAGGACCGGAGCGC
CTTTGCGATCCAGAAGACCTGGGCGAGGTCATGCTTTCGGGCCAAGGTAA
GGGGGTGGAGTAAATACTGGGGTGATCCAGTTAGGACCTCAATGGACAAG
CGGCGTATGCTCGCTTTGCCGAAACACACGCGTAGTAGAAAGAAGTGCTG
GCTATGCGATAATGAAGGTGTATCAGCGCTGATGCGAGGGAGTGAGTGCG
GCCTAGACCCCTATTTCGTTTGGTTAGTTCTGTTGGAGTCTGTTTATTAG
CCGGTTCCAAGTATACAGCTAAGGGAGCGCACGCGTCAAGCCTCGGCATG
ACCACGTAAACATCGGAATCTTCAAATCAATTCCCCTCCGACCGCCGTCT
CGCGCCCGTCCGCCCGCTTCGCCTGTGGGGTCGGTCGTCATGTCTCCCCC
TCACATCTTGGTGAATGGGTAAAGATCGCGGCGAGGGCTCTGGCGAGGGG
GGCAGCCAAGGCCATCGCGGCACGGAGGCGGCTCCGGGAAGCAGCGGAAG
AGGCGAGTTAATTCTATTCGTTCGCCAGTATTTTTGGTATCTTTTCAAAA
GAAATAGAAAAATATTGGTAGATTCACGGTTTTGCTTAGTCCGGAATGGT
CGATGCTTTTGCACAGATCAGGTGGGTTGACTGTAACCAGGTAGGCAACA
CTTAATGGCCTCTGATGTATGTATTACTTGGATTAAAAGGACAGGTTTCA
CGAGTTACGTTTTTCGAAGCGCTTTCCACCTTTGTTGCGAATCGAGAAGA
TAACGTCGATACCGTAGAGAGAGGTCACGGCCTTGTATGCGTAAGGCGAC
ATGATGCATGGATTCGACAGCGTTAGGAAATTAGTTTGGTACACTGCACG
GTCCGCAAAATATGTTCATGTGTGGGGTCGAGTTCTTGTATGAGTTTGTT
TAGGATTAAGATGCTCTCCTTCTCCTCATTCAAACTACCTTAGGCGTTTT
TCCATGTGTTTCATGGCATTCACGTGTTGTATTATTTTACCGATGCTTGC
GTGTTACAGGCAAGGCTAAGAACCGCTGATATTGATGAACGATCCGGCCA
GAAGCAGGAGGCGGTGAAGTTAGGTATGGCGTTGGCCTTCCAAGGCTGGT
GGCGTCGACTGGGCGCGATGCAGCGGTTAGCCGTTGGTTAACTGCTCGGT
GGCAGCGTGTATATGCTGGCCTGGCGTTCCTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7866:2435..5817-

>mRNA_H-paniculata_contig7866.15886.1 ID=mRNA_H-paniculata_contig7866.15886.1|Name=mRNA_H-paniculata_contig7866.15886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig7866:2435..5817- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACATATAAATTCTCAGTGTTATGTGCAGATGCGCGTAAAAAGGTGCC
CCTCACTGTAATACGTGTTTTCGTTTCTTGTGCGCTTTGCAGTGTGATCG
TACACAGTGGGTCGGGTGTGAGTAGTGGACACTACTTCTCCTATGTCCGC
ACGGCTGCGGATGAGTGGCTCCTCATGAACGACCGTGTCGTCACTAAGGT
ATGACATATAAATTCTCAGTGTTATGTGCAGATGCGCGTAAAAAGGTGCC
CCTCACTGTAATACGTGTTTTCGTTTCTTGTGCGCTTTGCAGTGTGATCG
TACACAGTGGGTCGGGTGTGAGTAGTGGACACTACTTCTCCTATGTCCGC
ACGGCTGCGGATGAGTGGCTCCTCATGAACGACCGTGTCGTCACTAAGGT
CGACTTAAACGAAGTCCTCAAAGTCCAGGCGTACATACTCGTATACTGCC
GAGATCATGCGAGAGAGCGACTTAAACGAAGTCCTCAAAGTCCAGGCGTA
CATACTCGTATACTGCCGAGATCATGCGAGAGAGAAACGGATCAGGGACC
TCAAGGACCGGAGCGCCTTTGCGATCCAGAAGACCTGGGCGAGGTCATGC
TTTCGGGCCAAGAAACGGATCAGGGACCTCAAGGACCGGAGCGCCTTTGC
GATCCAGAAGACCTGGGCGAGGTCATGCTTTCGGGCCAAGATCGCGGCGA
GGGCTCTGGCGAGGGGGGCAGCCAAGGCCATCGCGGCACGGAGGCGGCTC
CGGGAAGCAGCGGAAGAGATCGCGGCGAGGGCTCTGGCGAGGGGGGCAGC
CAAGGCCATCGCGGCACGGAGGCGGCTCCGGGAAGCAGCGGAAGAGGCAA
GGCTAAGAACCGCTGATATTGATGAACGATCCGGCCAGAAGCAGGAGGCG
GTGAAGTTAGGTATGGCGTTGGCCTTCCAAGGCTGGTGGCGTCGACTGGG
CGCGATGCAGCGGTTAGCCGTTGGTTAAGCAAGGCTAAGAACCGCTGATA
TTGATGAACGATCCGGCCAGAAGCAGGAGGCGGTGAAGTTAGGTATGGCG
TTGGCCTTCCAAGGCTGGTGGCGTCGACTGGGCGCGATGCAGCGGTTAGC
CGTTGGTTAA
back to top