mRNA_H-paniculata_contig7865.15885.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7865.15885.1 vs. uniprot
Match: A0A6H5KW93_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW93_9PHAE) HSP 1 Score: 177 bits (449), Expect = 2.550e-41 Identity = 193/488 (39.55%), Postives = 233/488 (47.75%), Query Frame = 3
Query: 3 AIRDGKMPESMQLVARLNAEAGGKLSVFDRLASTTTESRRQKVNDRDQLQENLRRKARQDAIRKKKDFKILP--LPGSSNGQPPAVGLGSTGSSISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGHDGGRSNATTSLRDSRPGTGRGGVEETTAPTWAAGGGLSQHRG-AVEPIKELSVFERLQAPSTRR---SSGD-----------------------------------------HVTPTRSTFSKNIPSKKPRSPSS---QNQKQAPPNHSKAGGVAHKKYMNNINKMGPGNATLAARL--QAEAELSRVPNTHS----SSGSGSPPRAIAAQSGADDSSASGNSLNSNSKDGN-GSAEGLDVVEEVSEGTGIERRRERRPVGARGDRDG--ATHGRG--GHVTGTSG---------------GASGNNVFDRLRNKLTESEQ-RRQAEAMAA-----------SGRHPFNSRRASQDKEAV 1202
AIR G+MPESMQLVAR+NAEAGGK+SVFDRLASTTTESRRQKVNDRDQL ENLRRKA+QDA RKKKDFK++P LPG+ NG P +G+ G GG S+ S+ D+ +E + T+ GG+ G A KELSVFERLQ RR SSGD +TP+ + S K +SPS +QAP NH+K G HKKY+ K+G G T+A+RL Q AE SS SGSPPRA++A SG+ S+ KD + S + L VV+E G G R RE++ G RD A H G G TG SG GA N+VFDRL TESE+ RRQ EA A +GR PF+ RR+SQDKEAV
Sbjct: 1596 AIRQGRMPESMQLVARVNAEAGGKVSVFDRLASTTTESRRQKVNDRDQLHENLRRKAKQDAFRKKKDFKVVPGHLPGA-NGLPTGT-MGAPGG------------------------------------GGSSSGHVSVADAIAS-----LEGGKSATYPGAGGIDGSSGSAATGPKELSVFERLQNSYIRRRSSSSGDPHSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTPSSGSVSVAPHRKTAKSPSPAFYSPVRQAPANHAKLSGGTHKKYV----KVG-GPTTVASRLFMQQHAEXXXXXXXXXXXXXSSNSGSPPRAMSAT--------SGSQAGSDEKDRSVNSDDALGVVDEEGLGLGGRRDREKKQFGTSIHRDSGAAAHATGQRGSYTGASGSGXXXXXXXXXXXAAGAGDNSVFDRLPYSYTESERKRRQPEAAPAPPAIPASSNPSTGRQPFSIRRSSQDKEAV 2027
BLAST of mRNA_H-paniculata_contig7865.15885.1 vs. uniprot
Match: D8LNZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ6_ECTSI) HSP 1 Score: 159 bits (402), Expect = 4.140e-36 Identity = 179/470 (38.09%), Postives = 217/470 (46.17%), Query Frame = 3
Query: 3 AIRDGKMPESMQLVARLNAEAGGKLSVFDRLASTTTESRRQKVNDRDQLQENLRRKARQDAIRKKKDFKILP--LPGSSNGQPPAV--GLGSTGSSISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGHDGGRSNA-----------TTSLRD----SRPGTGRGGVEETTAPTWAAG-------------------GGLSQHRG-AVEPIKELSVFERLQAPSTRRSSGDHVTPTRSTFSKNIPSKKPRSPSSQNQKQAPPNHSKAGGVAHKKYMNNINKMGPGNATLAAR--LQAEAELSRVPNTH----SSSGSGSPPRAIAAQSGADDSSASGNSLNSNSKDGN-GSAEGLDVVEEVSEGTGIERRRERRPVGARGDRDGATHGRG--GHVTGTSGGA--------------SGNNVFDRLRNKLTESEQ-RRQAEAMAASGRHPFNSRRASQDKEAVPNGGGSS 1223
AIR+G+MPESMQLVAR+NAEAGGK+SVFDRLASTTTESRRQKVNDRDQL ENLRRKA+QDA RKKKDFK++P LPG+ NG P G G GSS +GGRS + LRD + P TGR +EE GG+ G A KELSVFERLQAP+ NH+K G HKKY+ K+G G T+A+R +Q AE +SS SGSPPRA++A SG+ S+ KD + S E L VV+E + G G R RE++ +G R D H G G TG SG N+VF+RL TESE+ RRQ EA A P +S ++ E + NGGG S
Sbjct: 529 AIREGRMPESMQLVARVNAEAGGKVSVFDRLASTTTESRRQKVNDRDQLHENLRRKAKQDAFRKKKDFKVVPGHLPGA-NGLPTGTTGGPGGGGSSSGHVSVADAIASL---------------------EGGRSATYPASSESSRLLSNYLRDGTGNAAPTTGRWSIEEGXXXXXXXXXXXXXXXXXXXXXXXXXXRGGIDGSSGSAATGPKELSVFERLQAPA--------------------------------------NHAKLSGGTHKKYV----KVG-GPTTVASRSFMQQHAEAXXXXXXXXXXXASSNSGSPPRAMSAT--------SGSQAGSDEKDRSVNSDEALGVVDEEALGLGGRRDREKKQLGTR-DSGATAHAAGQRGSYTGASGXXXXXXXXXXXXXXXXGDNSVFNRLPYSYTESERKRRQPEAAPAPPAIPASSNPSTSSVE-LENGGGRS 923 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7865.15885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7865.15885.1 >prot_H-paniculata_contig7865.15885.1 ID=prot_H-paniculata_contig7865.15885.1|Name=mRNA_H-paniculata_contig7865.15885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=404bp MPESMQLVARLNAEAGGKLSVFDRLASTTTESRRQKVNDRDQLQENLRRKback to top mRNA from alignment at H-paniculata_contig7865:375..10735- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7865.15885.1 ID=mRNA_H-paniculata_contig7865.15885.1|Name=mRNA_H-paniculata_contig7865.15885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10361bp|location=Sequence derived from alignment at H-paniculata_contig7865:375..10735- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7865:375..10735- >mRNA_H-paniculata_contig7865.15885.1 ID=mRNA_H-paniculata_contig7865.15885.1|Name=mRNA_H-paniculata_contig7865.15885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2424bp|location=Sequence derived from alignment at H-paniculata_contig7865:375..10735- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |