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Homology
BLAST of mRNA_H-paniculata_contig7860.15882.1 vs. uniprot
Match: D7FT29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT29_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 9.350e-10 Identity = 46/118 (38.98%), Postives = 57/118 (48.31%), Query Frame = 1
Query: 295 MDFFLLLDASDSAITLCWDRHTEKDGCPVIEEVQMKKQTTSTSLSPAPAAGIAEAGSVDQQRDPEDSEAPG---------------WKTLSNSLKTGALRKKNLEAATGYVFRRRARQ 603
M FLLLDA+D AITLCW+R + +EEVQMK +TT + + + V + P W TLS SL + ALRKK L T YVFRRRAR+
Sbjct: 1 MATFLLLDATDQAITLCWERGPDVS----VEEVQMKMKTTPANDQQRQQQEVKDGSEVGNEVAPSSGSXXXXXXXXXXXXXXXXXDWVTLSKSLGSSALRKKKLAPGTEYVFRRRARK 114
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 70.5 |
| Seed ortholog evalue | 7.6e-10 |
| Seed eggNOG ortholog | 2880.D7FT29 |
| KEGG ko | ko:K17609 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | cellular oxidant detoxification |
| EggNOG OGs | KOG2501@1,KOG2501@2759 |
| EC | 1.8.1.8 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko01009 |
| Exons | 3 |
| Model size | 741 |
| Cds size | 447 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7860.15882.1 >prot_H-paniculata_contig7860.15882.1 ID=prot_H-paniculata_contig7860.15882.1|Name=mRNA_H-paniculata_contig7860.15882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MDFFLLLDASDSAITLCWDRHTEKDGCPVIEEVQMKKQTTSTSLSPAPAA
GIAEAGSVDQQRDPEDSEAPGWKTLSNSLKTGALRKKNLEAATGYVFRRR
ARQDGRSSTAERAPVGQVDLDTVAHEIEVYLDTHTFCISKFFLLKCKG* back to topmRNA from alignment at H-paniculata_contig7860:4294..6654- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig7860.15882.1 ID=mRNA_H-paniculata_contig7860.15882.1|Name=mRNA_H-paniculata_contig7860.15882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2361bp|location=Sequence derived from alignment at H-paniculata_contig7860:4294..6654- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAAAAACTAAGATAAAATGTGTGACGTTAGTGTGACGTAAAGAGCCCTGA
AAAATACCGTATCGTATCGCAGATAAGAAAAATGAATACTGCTCACCGCC
CAAATATCGAAAAGTCAAAATACCTTACGGTACTACTTATCCGTTTTCCC
AAAACCGTTTCCCAGAGAACGCCGCTGGAAAATTCAGCTACCTACTCGAG
CTGTTATGCCTCCACCAAATTTCAGCAAGATTAAAATAGTGAGTGCTGGG
AATTGAACTCACAAACTGCCAATGAAGTGGGATATGAAGTTGTCGGGGAA
AAAAGTACATGGTTTTTCTAGTAAAACGTTTCAATCGCCCGGGGTGTTAT
GTGAACGTTGAGGGAGGGAACCCATTTGGGTACTGTATTGTACACTAAAT
TCAAATACTTGTGAGCACCATTGGTTCTCCTTCCTTATGTTACAATTTTA
CAAGGGTGTGTTCTGTAGGGTACTGGTACTCTCGGTAGGGTAGTGGACAT
GTTACAGAACCCACAAAAGCACCCGTAGGGTATTGTAGCGGATGCGTCAC
AGAACCTACAGAAAGTGATGGGGTATGTTTTCGATCTCAGTACCGGGTAC
CCCGGGTACCCTACAGAACACACCCTTGCAATTTTAAAAAAATTTCAAAA
GAAATGTTCTAAACGTCGGTGTTTTTTTGGCGGGGTTTTTCGTCTCTCGA
CACCCGTGTGTTCCTTTACCCTACTTTCGAACCTGTCATTGGAAAAATGG
GGGTGATGGAGGGGAGGGGGGAAGGGAGGGAGCGAAAAGAGAACATACGG
GAAAAAAGGGAAAATAGCCAACTTGACGAACGGACGTAAGAAGCCTACCT
CTCTCTCTCTCTCTCTCTCTCTCTCTACCTTCAACACACACAGCTCTGGT
CGTTCGTCGCGCTTCGTATTCACGTACTTTGACCAGTAGCGGAGGAAGAA
CGGCTGCTGACTCTTTACAACGAAAACCGAAATAGAAAAAATATAATGGA
TTTTTTTCTGCTTCTGGACGCCAGCGATAGCGCCATCACGCTCTGCTGGG
ACCGACACACCGAGAAAGACGGATGCCCAGTCATCGAAGAGGTCCAAATG
AAAAAACAAACAACATCAACATCATTGTCACCAGCGCCTGCAGCGGGGAT
AGCCGAAGCAGGATCTGTTGACCAGCAGCGAGACCCAGAGGATTCTGAAG
CCCCTGGGTGGAAAACTCTGAGCAACAGCTTGAAGACGGGCGCTCTACGA
AAGAAAAACCTCGAAGCGGCAACGGGTTATGTGTTTCGCCGCAGAGCTAG
GCAGGCAAGTACTTGCCTCACTGCACACGTGATCGGCCCCAGCAGAAATA
GCACCATCAGCTGCTGCTGTAATGTTGCAATGCAATAATGCTGAATGTTA
CGTTGAACGAAACGAAACAAACCTATTCGCACAATAACAAGTGACCGCAA
TCGGGGATCCTGGTCATCGATCTTATGCACAGTGCAGATACAGTATCGAT
CATTGTTCGTTTTTCGGTCAAATTGCGCTAATTTGATATTCGTTGAATAT
ATAGCATACACCAATGAACATTTATTTTGTTGACGTCTGATGGATGGAAT
CAAGATATTGCTACAAATTTCACCTACAAGCGTTTAAGTAATCAAGTACT
GTCATAGTCCACTATCCGATTTTAATCAGGTTGGGTATCAGACTTAATTG
TTCAGGGGGGGGGGGGGGGGGGAGGTATGTAGGGCTTAGCTAAAAGCTAA
TGAAGTAACCACCCTTGTTATTTTACGGAAAGTAATATTACACTACAGTG
AAGTATTCGTGGAGCTGTTTTGTCACCTGGGAACACTGTTCAATTCTATA
CTCAAATCAAAGTTCTAAAACACAAAGAATTTTCTCGGAAGCTTGTCGAC
GTTTCATGCGAGCACAGCAAGCCCTTCTGCGAGAGTAGAGGGAAAACGCG
GACTGTCACTAGTGTAGTCATGGCTCTACTCATGTGTTAGTATTTCGTGT
AAGATCCAAAGGTGAGGTAAAAATGGAGATACTTTTCGGATTAATTTTCA
AGTCTGTACTCGAAAGTAACGTCTAATGCTTTGGCCTTTTGAGTTTGTCC
TAGTTTATTTATAATGTCATGAACACTGCCTTGATTTTTTCATCCATGTG
ATGACACACACACACATACACACACACACGCACAGAAAAAAGCAGTTTGT
TGTTACGCCGTCACCCTGCGCAGGATGGGAGGAGCTCGACAGCGGAGCGA
GCTCCAGTGGGGCAGGTTGACCTTGATACAGTGGCTCACGAAATTGAGGT
ATATCTTGACACACATACTTTCTGTATATCCAAGTTTTTTTTGTTAAAGT
GTAAAGGTTGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig7860:4294..6654- >mRNA_H-paniculata_contig7860.15882.1 ID=mRNA_H-paniculata_contig7860.15882.1|Name=mRNA_H-paniculata_contig7860.15882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig7860:4294..6654- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTTTTTTCTGCTTCTGGACGCCAGCGATAGCGCCATCACGCTCTG
CTGGGACCGACACACCGAGAAAGACGGATGCCCAGTCATCGAAGAGGTCC
AAATGAAAAAACAAACAACATCAACATCATTGTCACCAGCGCCTGCAGCG
GGGATAGCCGAAGCAGGATCTGTTGACCAGCAGCGAGACCCAGAGGATTC
TGAAGCCCCTGGGTGGAAAACTCTGAGCAACAGCTTGAAGACGGGCGCTC
TACGAAAGAAAAACCTCGAAGCGGCAACGGGTTATGTGTTTCGCCGCAGA
GCTAGGCAGATGGATTTTTTTCTGCTTCTGGACGCCAGCGATAGCGCCAT
CACGCTCTGCTGGGACCGACACACCGAGAAAGACGGATGCCCAGTCATCG
AAGAGGTCCAAATGAAAAAACAAACAACATCAACATCATTGTCACCAGCG
CCTGCAGCGGGGATAGCCGAAGCAGGATCTGTTGACCAGCAGCGAGACCC
AGAGGATTCTGAAGCCCCTGGGTGGAAAACTCTGAGCAACAGCTTGAAGA
CGGGCGCTCTACGAAAGAAAAACCTCGAAGCGGCAACGGGTTATGTGTTT
CGCCGCAGAGCTAGGCAGGATGGGAGGAGCTCGACAGCGGAGCGAGCTCC
AGTGGGGCAGGTTGACCTTGATACAGTGGCTCACGAAATTGAGGTATATC
TTGACACACATACTTTCTGTATATCCAAGTTTTTTTTGTTAAAGTGTAAA
GGTTGAGATGGGAGGAGCTCGACAGCGGAGCGAGCTCCAGTGGGGCAGGT
TGACCTTGATACAGTGGCTCACGAAATTGAGGTATATCTTGACACACATA
CTTTCTGTATATCCAAGTTTTTTTTGTTAAAGTGTAAAGGTTGA back to top
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