mRNA_H-paniculata_contig783.15856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig783.15856.1
Unique NamemRNA_H-paniculata_contig783.15856.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig783.15856.1 vs. uniprot
Match: D7FKK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 8.610e-28
Identity = 102/250 (40.80%), Postives = 125/250 (50.00%), Query Frame = 1 
Query:    4 LFNLPKEEIDSIREEARMLVVGGEGGSLSALSDSLPTPPTQVGGPCMGFRYSQCPDTRQMREERRSRTASARRGPA--SIRPSPAAPYVDARFVDALSAP-VVPPLDFSQLRNNGDFFPVAKVFQRHHRPSSEATTTAEKAAGQEDNDRHRHMVQAASSPVTLLLDDSPLAFVDSIGLQRGITKEIATSLQQPGLSQPKPPDIPLPGLRTVVAAGRGPTSSE--RESLSARLARLTGVGNSGRVVPLELV 738
            LFNLPKEEIDSIREEA  L+        S    SLPTPP Q      G   S    T   +++ R+ TA ARRGPA  + R   AAP+VD+RFV   ++P VVPPLDF++L N+   FP   V+        E          +  N R R  VQA + P       S     D   L  G    + +S Q PGL+ P+PP +P       + A     S E  RESLSARLARL      GRVVP+ELV
Sbjct:  118 LFNLPKEEIDSIREEASRLLESEPASDFS----SLPTPPGQQRRVRDGSASSVRRTTDSDQDDHRAMTAPARRGPAYGNGRSPTAAPFVDSRFVHLSTSPAVVPPLDFARLNNDPSKFPPGDVWSYPAAKGGEMLRDRLPTQDRNPNSRQRMRVQARNGPA------SGHTTRDDQELHGG--PAVISSFQAPGLTHPEPPAVPF------LRAKPETESKELGRESLSARLARLAAGRTPGRVVPVELV 349
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig783.15856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKK4_ECTSI8.610e-2840.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig783contigH-paniculata_contig783:30018..31180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue4.8e-25
Seed eggNOG ortholog2880.D7FKK4
Hectar predicted targeting categoryother localisation
EggNOG OGs2EYZZ@1,2T0E5@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size742
Cds size741
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig783.15856.1prot_H-paniculata_contig783.15856.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig783 30018..31180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.0454714-CDS-H-paniculata_contig783:30017..303291622930974.0454714-CDS-H-paniculata_contig783:30017..30329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig783 30018..30329 -
1691481534.3164265-CDS-H-paniculata_contig783:30017..303291691481534.3164265-CDS-H-paniculata_contig783:30017..30329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig783 30018..30329 -
1622930974.071151-CDS-H-paniculata_contig783:30395..306471622930974.071151-CDS-H-paniculata_contig783:30395..30647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig783 30396..30647 -
1691481534.3262484-CDS-H-paniculata_contig783:30395..306471691481534.3262484-CDS-H-paniculata_contig783:30395..30647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig783 30396..30647 -
1622930974.0969694-CDS-H-paniculata_contig783:31003..311801622930974.0969694-CDS-H-paniculata_contig783:31003..31180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig783 31004..31180 -
1691481534.336511-CDS-H-paniculata_contig783:31003..311801691481534.336511-CDS-H-paniculata_contig783:31003..31180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig783 31004..31180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig783.15856.1

>prot_H-paniculata_contig783.15856.1 ID=prot_H-paniculata_contig783.15856.1|Name=mRNA_H-paniculata_contig783.15856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=247bp
DLFNLPKEEIDSIREEARMLVVGGEGGSLSALSDSLPTPPTQVGGPCMGF
RYSQCPDTRQMREERRSRTASARRGPASIRPSPAAPYVDARFVDALSAPV
VPPLDFSQLRNNGDFFPVAKVFQRHHRPSSEATTTAEKAAGQEDNDRHRH
MVQAASSPVTLLLDDSPLAFVDSIGLQRGITKEIATSLQQPGLSQPKPPD
IPLPGLRTVVAAGRGPTSSERESLSARLARLTGVGNSGRVVPLELV*
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mRNA from alignment at H-paniculata_contig783:30018..31180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig783.15856.1 ID=mRNA_H-paniculata_contig783.15856.1|Name=mRNA_H-paniculata_contig783.15856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1163bp|location=Sequence derived from alignment at H-paniculata_contig783:30018..31180- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTCTTCAATCTACCCAAAGAAGAAATAGACTCGATTCGGGAAGAGGC
CAGGATGCTAGTTGTTGGGGGAGAAGGCGGGAGCTTGTCGGCGTTGAGCG
ATTCACTGCCCACTCCACCAACGCAGGTTGGTGGTCCTTGTATGGGATTT
CGCTATTCACAATGCCCAGATACACGAGTAAGCTTCGCACGAGGCAGAAA
ATTGCCTTATATACCGCTATGGTGAGTGCTCGTCTGTCGCAGCTTTGGTA
AGTGAAATGCGCGCAACGGCATGGGTGGTCATTAATGAGGCACACTCGAA
TTGAAGTTTGTGCAAATAAATGGCGATTTTCGGCAGTAATTCAGCTGTCA
AAATGACAGCAGAACGGCAGCGCTAGTCTACATCCTTCACGACCACATTT
GCATATCCATTTCCAGCGTCCTCTTATCACGTACAAATAACCTGTGGATT
TTACGAATCCCACTGTGACGGGCCATTCCACCTCGACTTTTTCCGTTGTT
GCCCCGCATTCCGCGCACCGTGTTGCTCCCCAGCAAATGCGAGAAGAACG
CAGAAGTAGAACAGCATCTGCGCGGCGTGGGCCAGCTTCAATCAGACCAT
CCCCGGCAGCGCCCTACGTCGACGCACGCTTTGTTGACGCATTATCAGCA
CCAGTCGTGCCTCCGCTCGACTTCAGCCAGCTGCGCAACAACGGGGATTT
CTTTCCCGTCGCAAAGGTGTTTCAAAGACATCATCGACCCTCGTCCGAGG
CGACGACGACAGCAGAAAAAGCAGCGGGTCAAGAGGTCGATCTTCACGAC
GGTGATCTCGAGGTAGTGCTGCCGGGGAGGGGTAGGCCGGGTTTATCCCA
GGATAATGACCGCCACCGCCACATGGTGCAAGCAGCGTCATCGCCTGTGA
CACTGTTGCTAGACGATTCCCCCCTTGCATTCGTAGATTCCATCGGGTTG
CAGAGAGGAATTACAAAGGAAATAGCAACGTCGTTGCAACAGCCCGGACT
CAGCCAACCTAAGCCTCCGGACATCCCACTTCCTGGACTGCGCACAGTGG
TAGCAGCAGGGAGAGGTCCTACTTCTTCAGAACGAGAAAGTCTATCTGCA
CGTTTGGCAAGGCTTACTGGCGTCGGAAATTCAGGGAGAGTAGTTCCGTT
GGAACTTGTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig783:30018..31180-

>mRNA_H-paniculata_contig783.15856.1 ID=mRNA_H-paniculata_contig783.15856.1|Name=mRNA_H-paniculata_contig783.15856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at H-paniculata_contig783:30018..31180- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTCTTCAATCTACCCAAAGAAGAAATAGACTCGATTCGGGAAGAGGC
CAGGATGCTAGTTGTTGGGGGAGAAGGCGGGAGCTTGTCGGCGTTGAGCG
ATTCACTGCCCACTCCACCAACGCAGGTTGGTGGTCCTTGTATGGGATTT
CGCTATTCACAATGCCCAGATACACGAGACCTCTTCAATCTACCCAAAGA
AGAAATAGACTCGATTCGGGAAGAGGCCAGGATGCTAGTTGTTGGGGGAG
AAGGCGGGAGCTTGTCGGCGTTGAGCGATTCACTGCCCACTCCACCAACG
CAGGTTGGTGGTCCTTGTATGGGATTTCGCTATTCACAATGCCCAGATAC
ACGACAAATGCGAGAAGAACGCAGAAGTAGAACAGCATCTGCGCGGCGTG
GGCCAGCTTCAATCAGACCATCCCCGGCAGCGCCCTACGTCGACGCACGC
TTTGTTGACGCATTATCAGCACCAGTCGTGCCTCCGCTCGACTTCAGCCA
GCTGCGCAACAACGGGGATTTCTTTCCCGTCGCAAAGGTGTTTCAAAGAC
ATCATCGACCCTCGTCCGAGGCGACGACGACAGCAGAAAAAGCAGCGGGT
CAAGAGCAAATGCGAGAAGAACGCAGAAGTAGAACAGCATCTGCGCGGCG
TGGGCCAGCTTCAATCAGACCATCCCCGGCAGCGCCCTACGTCGACGCAC
GCTTTGTTGACGCATTATCAGCACCAGTCGTGCCTCCGCTCGACTTCAGC
CAGCTGCGCAACAACGGGGATTTCTTTCCCGTCGCAAAGGTGTTTCAAAG
ACATCATCGACCCTCGTCCGAGGCGACGACGACAGCAGAAAAAGCAGCGG
GTCAAGAGGATAATGACCGCCACCGCCACATGGTGCAAGCAGCGTCATCG
CCTGTGACACTGTTGCTAGACGATTCCCCCCTTGCATTCGTAGATTCCAT
CGGGTTGCAGAGAGGAATTACAAAGGAAATAGCAACGTCGTTGCAACAGC
CCGGACTCAGCCAACCTAAGCCTCCGGACATCCCACTTCCTGGACTGCGC
ACAGTGGTAGCAGCAGGGAGAGGTCCTACTTCTTCAGAACGAGAAAGTCT
ATCTGCACGTTTGGCAAGGCTTACTGGCGTCGGAAATTCAGGGAGAGTAG
TTCCGTTGGAACTTGTTTGAGATAATGACCGCCACCGCCACATGGTGCAA
GCAGCGTCATCGCCTGTGACACTGTTGCTAGACGATTCCCCCCTTGCATT
CGTAGATTCCATCGGGTTGCAGAGAGGAATTACAAAGGAAATAGCAACGT
CGTTGCAACAGCCCGGACTCAGCCAACCTAAGCCTCCGGACATCCCACTT
CCTGGACTGCGCACAGTGGTAGCAGCAGGGAGAGGTCCTACTTCTTCAGA
ACGAGAAAGTCTATCTGCACGTTTGGCAAGGCTTACTGGCGTCGGAAATT
CAGGGAGAGTAGTTCCGTTGGAACTTGTTTGA
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