mRNA_H-paniculata_contig775.15773.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig775.15773.1
Unique NamemRNA_H-paniculata_contig775.15773.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig775.15773.1 vs. uniprot
Match: D8LUC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC1_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.590e-44
Identity = 92/164 (56.10%), Postives = 119/164 (72.56%), Query Frame = 3 
Query:  330 PALSDSGGERV--TPDEVLTLGVLALAGLWPGTWVGIAAIIVKQVDRLAHNDCADIAFRRCAMSLVDMLLKSPGDPTVAVETWRHLAAAQARLPEDLSQVLGLACSLLQSRTMEAADIRARKKRRRIASADTVAAISAAPAPLTPPCATALVVMVSDMGREEDE 815
            P  + + GE    TPDEVL LGVLALAGLW G W GIA +IV +V++L  +   D+ FRRCA SLVD+LL+SPG+ ++  +TWR L++ QARLP  L QVLG+ACSLLQ + +EAAD RA++KRRR  S+ ++AA+   P PL PPC T LV MV D+ REE+E
Sbjct:   55 PPRNHANGEAAAATPDEVLALGVLALAGLWSGCWSGIATVIVHKVEKLIRSGSVDVPFRRCAQSLVDLLLQSPGESSLGEDTWRQLSSTQARLPHKLGQVLGIACSLLQRKAVEAADTRAKRKRRRCLSS-SMAALKV-PTPLPPPCTTGLVTMVGDIAREEEE 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig775.15773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC1_ECTSI1.590e-4456.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig775contigH-paniculata_contig775:14059..17475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1856
Cds size1236
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig775.15773.1prot_H-paniculata_contig775.15773.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig775 14515..15750 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.7029786-UTR-H-paniculata_contig775:14058..145141622930961.7029786-UTR-H-paniculata_contig775:14058..14514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 14059..14514 -
1691481528.9860609-UTR-H-paniculata_contig775:14058..145141691481528.9860609-UTR-H-paniculata_contig775:14058..14514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 14059..14514 -
1622930961.7504108-UTR-H-paniculata_contig775:15750..158291622930961.7504108-UTR-H-paniculata_contig775:15750..15829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 15751..15829 -
1691481529.0052104-UTR-H-paniculata_contig775:15750..158291691481529.0052104-UTR-H-paniculata_contig775:15750..15829Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 15751..15829 -
1622930961.7681475-UTR-H-paniculata_contig775:17390..174751622930961.7681475-UTR-H-paniculata_contig775:17390..17475Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 17391..17475 -
1691481529.0130563-UTR-H-paniculata_contig775:17390..174751691481529.0130563-UTR-H-paniculata_contig775:17390..17475Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 17391..17475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.7322357-CDS-H-paniculata_contig775:14514..157501622930961.7322357-CDS-H-paniculata_contig775:14514..15750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 14515..15750 -
1691481528.99735-CDS-H-paniculata_contig775:14514..157501691481528.99735-CDS-H-paniculata_contig775:14514..15750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 14515..15750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig775.15773.1

>prot_H-paniculata_contig775.15773.1 ID=prot_H-paniculata_contig775.15773.1|Name=mRNA_H-paniculata_contig775.15773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=412bp
MDAAAATPSNHSNGMNVPAVQARQRYVPILPRPSVPEPLPPPPPPPPLMV
DQRLAPALSDSGGERVTPDEVLTLGVLALAGLWPGTWVGIAAIIVKQVDR
LAHNDCADIAFRRCAMSLVDMLLKSPGDPTVAVETWRHLAAAQARLPEDL
SQVLGLACSLLQSRTMEAADIRARKKRRRIASADTVAAISAAPAPLTPPC
ATALVVMVSDMGREEDEARRREQAKEEDERGEEGRVGLELENEPGLLTPP
HQLLSLSMPLTPEAPGPEVHISHHISPPPPPPPPPLPHSHSYNSALQRIP
LASPGHVQNGVAVWGVRSIVGNGISVDLDAAGAPAGGCAPSPIAPTGLVP
DPTHSQRPFVWDVNAGSQMEYYSTPDGQFSPQRQGEGGGGSPRRSPVGAS
SIDGDLGSTIP*
back to top

mRNA from alignment at H-paniculata_contig775:14059..17475-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig775.15773.1 ID=mRNA_H-paniculata_contig775.15773.1|Name=mRNA_H-paniculata_contig775.15773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3417bp|location=Sequence derived from alignment at H-paniculata_contig775:14059..17475- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTACACACGTCATATTCGATCGGGTCATGTGTGGCTTCCCTGTGCGGC
TGATCGTCTAAAGGTCAACTGCTGGCCAGGATATTGTGAGTTTTCGTGCT
AAACGTGTCTCTCGTCATCTCTCTGTATTTGCGCGTGTGTTTATACCTAG
AATTTTGAAAGTATATCCCAGCCGACAAGTACCGATTCAAGTCTAACTCT
CACGTAATTGAGGAAGCTGTCGCAAACAGACACAAACAGTACTGTACAGT
GCGTTGGGTCAAGGATCAAACAAGCTATCTCCACATGTCATGGTGGTTTG
AAAAATTGGAGTGTTGTATGGACTCGTATTTATTTTATGTATGGCATGTT
CCTCGTTCAACCGATACCGCCGTGCTGTCTGGCCCTCGTCGCTGTGTTTA
CGGGTAAAGATCTCTACCATACAGGAAATTTGCAGTTACATTCAAAATCT
CCAACCATGCAATGTGTGTGTTGCTCTTCGGCAAACGACACACCCACAGA
TAAAGTATGCACTAAAGCCGTAGATTATCTTGTGTTATCAAAATCTAAGT
CGTTGATCCGTTGATAGTGGTTGATGACCGTCCTACTGCTCTCTTTGGAT
ACCAAGTGCGGTCTGTGAACGCGAAATACGTTACGTTAGTGAGATATGTT
GTACACGATACATCTACGCAATGCCAACGTCGAGGGAATAGTGGATTGGT
GCCGGCCCGTTGTTTATCTGAAGTGAGTATAGAAAATAGCGCAGCCGTAA
CCGCACGTACATCAACGTTGCTGTAATCATGATATCAGAATTTGAATACC
GTACAGATGCGGCCTGTCAGTAAAAAACTCTTATTAGGACTTAGCCTCAT
TATCTTGTTTTGAGCGGTATTTCTTTTTCGCTAGTTTCTTACTGGCGAAG
TGCAACAAAGCGTGGTTTTCTTGTTTCTTATGTTGCCGTGGCGTTCTACA
TTTCCCGAACGGCCCAAACTCTGCAGGGGAGATCGCTGTCGTGCGGTGGT
GTAGTGGTCCGCGTAACACGTGCTGGTGATCTGTCATACGCAATACCCCA
AAAAAGACGGAGTTCAGTTGGACATCCTCCATGAAACCGGAAACACGAAC
CGGTTAAGCGGAAATATACATTTTGAGTTGCGCTTTGGTTCCTATCGACC
TATATCTCGTACATACTATGATAGTACCTTATCCATGAGGTGGATGTACC
GCATTTCTTGTTCCTGCCGAGGAGCAAGAACTGTAATTTTTCTTATCTGC
AGTCGGTATATAATACAATTTTCTTATACGCCTGTTGCGTAACCTCTGGC
ACGATTTGAATTAATTTTTCATGTCGGATTACAATTGGAGGGCTCCATCT
GTCGTCCACATGCAAACACGAGACACCTCCATTATTTCGAATGAGTGTAC
TTGTGTTCAAGTCTCGGTGAGGTGTTATTTGACGTGCAAGGACATTTTTT
AGCTGTTTCTGGTTCCATTGTAAGGCCGATCCTCAAGATTTTCCATCGTA
GTGAGCGCAGCGTGTCGCTTTAGATAGCTCCGCCTCGAACCCCATCTTAC
GTCTTACGCTCAGATGCCATTGTGGAGTACAACTCGACAAAACTCACACC
GCAAGATCTGCCTCCAATATATCCCTCTTCTCTCAATATGCAACAGGCGC
CGTTTACTTATTTCCCAACCCATCGTTCTGTCGGGCAACGATTTCGGATA
CAATCGAGAGTTGGAGGGGGGGGAAATGGATGCCGCTGCAGCTACCCCTT
CGAATCACAGCAACGGCATGAATGTCCCCGCGGTTCAAGCCCGCCAGCGT
TACGTACCAATCCTGCCGCGGCCTTCAGTGCCAGAACCACTACCACCACC
ACCTCCACCGCCTCCACTCATGGTAGACCAACGGCTTGCTCCAGCGCTCT
CAGATTCTGGCGGAGAACGGGTAACGCCAGACGAAGTCCTTACCTTGGGA
GTATTAGCTCTGGCCGGACTTTGGCCGGGAACATGGGTCGGTATTGCGGC
GATAATTGTCAAGCAGGTAGACCGACTTGCACACAATGACTGCGCCGATA
TAGCGTTTCGACGTTGCGCCATGTCTCTCGTCGACATGCTCCTCAAGTCG
CCCGGAGATCCGACCGTTGCTGTAGAGACCTGGCGACACCTCGCTGCCGC
GCAGGCGCGCCTTCCCGAGGATTTGTCGCAAGTTTTGGGACTCGCGTGTT
CTCTGCTACAGAGTCGAACAATGGAGGCGGCCGACATTCGGGCGAGAAAG
AAGCGCCGACGAATCGCAAGCGCCGACACGGTGGCAGCCATCTCGGCCGC
GCCAGCACCGCTCACACCTCCCTGTGCGACGGCATTGGTTGTAATGGTGA
GCGATATGGGGCGCGAGGAAGATGAGGCTAGGCGAAGAGAGCAAGCGAAG
GAAGAAGATGAGCGAGGGGAGGAGGGGAGGGTCGGACTTGAGTTGGAAAA
CGAGCCGGGATTGTTGACGCCGCCGCACCAATTATTGTCATTGTCGATGC
CTTTGACACCAGAAGCACCTGGACCTGAAGTTCATATTAGCCATCATATA
TCACCACCACCGCCGCCGCCGCCGCCGCCGCTACCTCACTCCCACAGTTA
CAATTCCGCGTTGCAGCGGATACCGCTAGCATCGCCTGGACACGTGCAGA
ACGGTGTGGCGGTTTGGGGAGTGAGGAGTATTGTAGGTAATGGTATCAGC
GTTGATCTGGACGCGGCAGGGGCCCCTGCTGGCGGTTGTGCACCCTCGCC
CATTGCACCGACTGGCTTGGTTCCCGATCCCACACACTCCCAGAGGCCGT
TTGTGTGGGATGTGAACGCTGGCTCTCAGATGGAGTACTATTCAACGCCC
GACGGCCAGTTTTCGCCCCAACGACAAGGCGAAGGTGGAGGGGGGAGTCC
ACGACGGTCCCCTGTTGGTGCTTCTAGTATAGACGGTGATCTCGGCTCAA
CAATTCCATGACAGAAAGTGTGGTACACGCGTGGTGTTATTGGTAGTCCA
TTTTCTTTTCTTAGAGTGCGCTTGCGTTTTTCGATGGTCGAGAGTAAGCT
TTTATAATTTTTGTCGGGTGTGACTGTGAATTGAGTAACTTGTCTAACTG
GTGTATGTTTCGTTGTGTGGAGAATTGCCTAGTATTTTACGCTGAATTGC
TTGCGTGGGCGAATAGAGAAAATGCAAAAGAAGGCCAATTCTTAAGGCCA
TGAGAGGTGCAGATCAATCCCGAGCTACGAAAAGCAATTTTGATCAATTC
AATTTATTTGCTTAAATGCCACCACCCATCGTAATTAAGCCAATAAAGCA
CGTTGGGGATCTGCAGTGCATGAATCGGACTGTCTTAGTCGTGAGTGGCG
CTAACAATTCTTGTCAGGAAAGTAATACCTTGGTACATTAACAAGAAACG
CAAACACCTACCTTCGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig775:14059..17475-

>mRNA_H-paniculata_contig775.15773.1 ID=mRNA_H-paniculata_contig775.15773.1|Name=mRNA_H-paniculata_contig775.15773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2472bp|location=Sequence derived from alignment at H-paniculata_contig775:14059..17475- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGCCGCTGCAGCTACCCCTTCGAATCACAGCAACGGCATGAATGT
CCCCGCGGTTCAAGCCCGCCAGCGTTACGTACCAATCCTGCCGCGGCCTT
CAGTGCCAGAACCACTACCACCACCACCTCCACCGCCTCCACTCATGGTA
GACCAACGGCTTGCTCCAGCGCTCTCAGATTCTGGCGGAGAACGGGTAAC
GCCAGACGAAGTCCTTACCTTGGGAGTATTAGCTCTGGCCGGACTTTGGC
CGGGAACATGGGTCGGTATTGCGGCGATAATTGTCAAGCAGGTAGACCGA
CTTGCACACAATGACTGCGCCGATATAGCGTTTCGACGTTGCGCCATGTC
TCTCGTCGACATGCTCCTCAAGTCGCCCGGAGATCCGACCGTTGCTGTAG
AGACCTGGCGACACCTCGCTGCCGCGCAGGCGCGCCTTCCCGAGGATTTG
TCGCAAGTTTTGGGACTCGCGTGTTCTCTGCTACAGAGTCGAACAATGGA
GGCGGCCGACATTCGGGCGAGAAAGAAGCGCCGACGAATCGCAAGCGCCG
ACACGGTGGCAGCCATCTCGGCCGCGCCAGCACCGCTCACACCTCCCTGT
GCGACGGCATTGGTTGTAATGGTGAGCGATATGGGGCGCGAGGAAGATGA
GGCTAGGCGAAGAGAGCAAGCGAAGGAAGAAGATGAGCGAGGGGAGGAGG
GGAGGGTCGGACTTGAGTTGGAAAACGAGCCGGGATTGTTGACGCCGCCG
CACCAATTATTGTCATTGTCGATGCCTTTGACACCAGAAGCACCTGGACC
TGAAGTTCATATTAGCCATCATATATCACCACCACCGCCGCCGCCGCCGC
CGCCGCTACCTCACTCCCACAGTTACAATTCCGCGTTGCAGCGGATACCG
CTAGCATCGCCTGGACACGTGCAGAACGGTGTGGCGGTTTGGGGAGTGAG
GAGTATTGTAGGTAATGGTATCAGCGTTGATCTGGACGCGGCAGGGGCCC
CTGCTGGCGGTTGTGCACCCTCGCCCATTGCACCGACTGGCTTGGTTCCC
GATCCCACACACTCCCAGAGGCCGTTTGTGTGGGATGTGAACGCTGGCTC
TCAGATGGAGTACTATTCAACGCCCGACGGCCAGTTTTCGCCCCAACGAC
AAGGCGAAGGTGGAGGGGGGAGTCCACGACGGTCCCCTGTTGGTGCTTCT
AGTATAGACGGTGATCTCGGCTCAACAATTCCATGAATGGATGCCGCTGC
AGCTACCCCTTCGAATCACAGCAACGGCATGAATGTCCCCGCGGTTCAAG
CCCGCCAGCGTTACGTACCAATCCTGCCGCGGCCTTCAGTGCCAGAACCA
CTACCACCACCACCTCCACCGCCTCCACTCATGGTAGACCAACGGCTTGC
TCCAGCGCTCTCAGATTCTGGCGGAGAACGGGTAACGCCAGACGAAGTCC
TTACCTTGGGAGTATTAGCTCTGGCCGGACTTTGGCCGGGAACATGGGTC
GGTATTGCGGCGATAATTGTCAAGCAGGTAGACCGACTTGCACACAATGA
CTGCGCCGATATAGCGTTTCGACGTTGCGCCATGTCTCTCGTCGACATGC
TCCTCAAGTCGCCCGGAGATCCGACCGTTGCTGTAGAGACCTGGCGACAC
CTCGCTGCCGCGCAGGCGCGCCTTCCCGAGGATTTGTCGCAAGTTTTGGG
ACTCGCGTGTTCTCTGCTACAGAGTCGAACAATGGAGGCGGCCGACATTC
GGGCGAGAAAGAAGCGCCGACGAATCGCAAGCGCCGACACGGTGGCAGCC
ATCTCGGCCGCGCCAGCACCGCTCACACCTCCCTGTGCGACGGCATTGGT
TGTAATGGTGAGCGATATGGGGCGCGAGGAAGATGAGGCTAGGCGAAGAG
AGCAAGCGAAGGAAGAAGATGAGCGAGGGGAGGAGGGGAGGGTCGGACTT
GAGTTGGAAAACGAGCCGGGATTGTTGACGCCGCCGCACCAATTATTGTC
ATTGTCGATGCCTTTGACACCAGAAGCACCTGGACCTGAAGTTCATATTA
GCCATCATATATCACCACCACCGCCGCCGCCGCCGCCGCCGCTACCTCAC
TCCCACAGTTACAATTCCGCGTTGCAGCGGATACCGCTAGCATCGCCTGG
ACACGTGCAGAACGGTGTGGCGGTTTGGGGAGTGAGGAGTATTGTAGGTA
ATGGTATCAGCGTTGATCTGGACGCGGCAGGGGCCCCTGCTGGCGGTTGT
GCACCCTCGCCCATTGCACCGACTGGCTTGGTTCCCGATCCCACACACTC
CCAGAGGCCGTTTGTGTGGGATGTGAACGCTGGCTCTCAGATGGAGTACT
ATTCAACGCCCGACGGCCAGTTTTCGCCCCAACGACAAGGCGAAGGTGGA
GGGGGGAGTCCACGACGGTCCCCTGTTGGTGCTTCTAGTATAGACGGTGA
TCTCGGCTCAACAATTCCATGA
back to top