mRNA_H-paniculata_contig775.15771.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig775.15771.1
Unique NamemRNA_H-paniculata_contig775.15771.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig775.15771.1 vs. uniprot
Match: D8LUB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB9_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.670e-8
Identity = 51/96 (53.12%), Postives = 62/96 (64.58%), Query Frame = 3 
Query:  213 LDEFVPENFCDVIAYDVSDEQVADAIDEMETKLKD---KVKXXXXXXXXXXXXXXX-------KTSCDNVQKNIQETLDRNIDIFDRYVKKNVSVV 470
            L +F  ENFCD + YD  D+ +A+A+ +ME +L     KVK     XXXXXXXXXX       KT CDNVQ  IQ+  DRNIDI DRY+KKNV+ V
Sbjct:   24 LGDFKTENFCDEV-YDYMDDSLAEAMVKMEEELIQAAAKVKGADQGXXXXXXXXXXXDIEASIKTCCDNVQTRIQQEFDRNIDILDRYIKKNVAAV 118
[Close]
BLAST of mRNA_H-paniculata_contig775.15771.1 vs. uniprot
Match: A0A6H5KN64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN64_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 6.180e-5
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 3 
Query:  372 KTSCDNVQKNIQETLDRNIDIFDRYVKKNVSVV 470
            KT CDNVQ  IQ+  DRNIDI DRY+KKNV+ V
Sbjct:   33 KTCCDNVQTRIQQEFDRNIDILDRYIKKNVAAV 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig775.15771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LUB9_ECTSI2.670e-853.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN64_9PHAE6.180e-569.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig775contigH-paniculata_contig775:5788..7637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size540
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig775.15771.1prot_H-paniculata_contig775.15771.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig775 5788..7470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930961.9146767-CDS-H-paniculata_contig775:5787..60121622930961.9146767-CDS-H-paniculata_contig775:5787..6012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 5788..6012 -
1691481529.0800903-CDS-H-paniculata_contig775:5787..60121691481529.0800903-CDS-H-paniculata_contig775:5787..6012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 5788..6012 -
1622930962.1802068-CDS-H-paniculata_contig775:6418..64801622930962.1802068-CDS-H-paniculata_contig775:6418..6480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 6419..6480 -
1691481529.0887659-CDS-H-paniculata_contig775:6418..64801691481529.0887659-CDS-H-paniculata_contig775:6418..6480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 6419..6480 -
1622930962.2254162-CDS-H-paniculata_contig775:7385..74701622930962.2254162-CDS-H-paniculata_contig775:7385..7470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 7386..7470 -
1691481529.097284-CDS-H-paniculata_contig775:7385..74701691481529.097284-CDS-H-paniculata_contig775:7385..7470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig775 7386..7470 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930962.246048-UTR-H-paniculata_contig775:7470..76371622930962.246048-UTR-H-paniculata_contig775:7470..7637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 7471..7637 -
1691481529.1063528-UTR-H-paniculata_contig775:7470..76371691481529.1063528-UTR-H-paniculata_contig775:7470..7637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig775 7471..7637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig775.15771.1

>prot_H-paniculata_contig775.15771.1 ID=prot_H-paniculata_contig775.15771.1|Name=mRNA_H-paniculata_contig775.15771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MASSAAAAESLQPQQLDEFVPENFCDVIAYDVSDEQVADAIDEMETKLKD
KVKADGVKQQQQDVEDKIKTSCDNVQKNIQETLDRNIDIFDRYVKKNVSV
VKGALSDLSAVAPAAGAMDSAARG
back to top

mRNA from alignment at H-paniculata_contig775:5788..7637-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig775.15771.1 ID=mRNA_H-paniculata_contig775.15771.1|Name=mRNA_H-paniculata_contig775.15771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1850bp|location=Sequence derived from alignment at H-paniculata_contig775:5788..7637- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTAGCTACAGCACGAAGACAAGGCAGGCAAGGTGGAGCGCACTGTTAGT
TGGGCCCTACTACCGTGATTTTTTGTTCTTCATCGTTGGTTTCCTTCCTT
ACCTTCGCTGTTGGCGTGATTTTGCTTCGTTGGAAAAGTTAATAGAGCTG
GATCTGGCGATAGGGTGATGGCGAGTTCTGCAGCAGCAGCTGAGAGCTTG
CAGCCTCAACAGCTCGACGAGTTTGTGCCAGAGAATTTCTGCGATGTCAT
AGGTGAGAAGAAGATCTTTGGTTCTATGATGATTGTTGTGTTCCACCTGT
TGTTGGTGTATCTTGCCTGTCGTCGCTATCGGTTACAAAATATCAAAATG
AGCTCATGTTTCAGTTTGAAAAAACGAAACAGGTGTGGTAATTGAAAAGG
CGCCCTTTTTTTCGAAGAAACGTGGCCCCGGACAAACACGAATGGTTTTA
ACAAAACACTTCAGTATTCGCTTGAAAATCAGAATGAGCTCGTGTGTTCT
GTGCCCCGGACCATCCGCGACTGTTAATATTACTGGTAAATGGAATGGAC
GGGGGTGGGTACATTGTTCTATGTGTCCGCGAACACTTTCAGTTTTTTTG
TGAAAACCATTTGCAAGTATTCCTATCTGTGCGGGGGGCGCAGTATTCGT
TTGTTGTTTGTCAGATGTATCAGGTCGGAAAACATGTTACCGTTTGGTGA
TCTTAACGCATTGACTATATTTTCATTTTTAGTACATGCATGATATCGCA
TTGAAGGGCTGTTGGTGGTTTCGGTGCTCGTTGCGCATTCTCTAATTGTG
TATCGATCCGAGAACTTCTAATATTAGTAGTTCGGGTATTAACAGTGATA
GGCCTATGGTAGCTGGGGACATGTGATTTCAGTGGGGACGTCACGTCGAA
CCCTCGGCGTGTCTACATGTGTATTATCTTTATTTTCCGCCCCTCGTTAA
TTGCACTACGATAGATATACGAATCAATTGAAGTAAATTAAAAAACAATA
TTCACTTACTTGGCGTCTCATCAAATAGTATCAGCTAGCACTGTTCACAT
ATCAGAGCTTTCGTTTCTGCACCACTTGTACTGGATCCATTGAGCTGTAT
CTATGTTGTGCACTCATGACATCATATGTTTGTATGTGCATACATGTTAC
GGTGCAGCATACGACGTCTCGGATGAACAGGTGGCAGACGCGATCGACGA
GATGGAGACTAAGTTGAAGGTGAGCATCGTTGTTTGGTCTTGTAGACTCG
CTTACCCCAAGACACGTACGCTTCAGCAAGGTCTGCGTTCCCTCGTGGGA
GTACAAGTATGACTAGTAAACGACCCCTGCACATTTGGGGTGAACATGCC
GGACATCGCTAATGCGATCTTTTAAAATATGTAGGTATCGCTCAGCAGCT
GCGTGTCCTTGATGTTTTCAGCAAAATTTGGGCGGGGAAATTCTGCCACC
TCGACGCTAATTTAATGCCGCCATCCACCGTAGTTCCAGTTATAATGCCC
ATAATTCAAAGCCGACCGGCGCCCCCTCCCCTGCGGCTTTATATAACTGG
GCACTGCGATTTTTGTAAATATATCTACGCGACAGCACCAAAATTCCCCC
CTTAAATCTTCAACAAACGAGACAGGACAAGGTCAAGGCCGACGGAGTCA
AGCAACAACAGCAGGACGTCGAAGATAAGATTAAAACTTCCTGCGACAAC
GTGCAGAAAAACATCCAAGAAACGTTGGACCGAAATATTGACATATTTGA
CCGCTACGTCAAGAAGAATGTTTCCGTTGTGAAGGGTGCGCTTAGCGATC
TGAGCGCAGTGGCACCGGCAGCGGGAGCTATGGATTCAGCGGCGAGGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig775:5788..7637-

>mRNA_H-paniculata_contig775.15771.1 ID=mRNA_H-paniculata_contig775.15771.1|Name=mRNA_H-paniculata_contig775.15771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig775:5788..7637- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAGTTCTGCAGCAGCAGCTGAGAGCTTGCAGCCTCAACAGCTCGA
CGAGTTTGTGCCAGAGAATTTCTGCGATGTCATAGATGGCGAGTTCTGCA
GCAGCAGCTGAGAGCTTGCAGCCTCAACAGCTCGACGAGTTTGTGCCAGA
GAATTTCTGCGATGTCATAGCATACGACGTCTCGGATGAACAGGTGGCAG
ACGCGATCGACGAGATGGAGACTAAGTTGAAGCATACGACGTCTCGGATG
AACAGGTGGCAGACGCGATCGACGAGATGGAGACTAAGTTGAAGGACAAG
GTCAAGGCCGACGGAGTCAAGCAACAACAGCAGGACGTCGAAGATAAGAT
TAAAACTTCCTGCGACAACGTGCAGAAAAACATCCAAGAAACGTTGGACC
GAAATATTGACATATTTGACCGCTACGTCAAGAAGAATGTTTCCGTTGTG
AAGGGTGCGCTTAGCGATCTGAGCGCAGTGGCACCGGCAGCGGGAGCTAT
GGATTCAGCGGCGAGGGGGGACAAGGTCAAGGCCGACGGAGTCAAGCAAC
AACAGCAGGACGTCGAAGATAAGATTAAAACTTCCTGCGACAACGTGCAG
AAAAACATCCAAGAAACGTTGGACCGAAATATTGACATATTTGACCGCTA
CGTCAAGAAGAATGTTTCCGTTGTGAAGGGTGCGCTTAGCGATCTGAGCG
CAGTGGCACCGGCAGCGGGAGCTATGGATTCAGCGGCGAGGGGG
back to top