mRNA_H-paniculata_contig7725.15748.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7725.15748.1
Unique NamemRNA_H-paniculata_contig7725.15748.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7725.15748.1 vs. uniprot
Match: D7FM39_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM39_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 2.760e-82
Identity = 176/426 (41.31%), Postives = 243/426 (57.04%), Query Frame = 1 
Query:  133 LIENVTEGFLPSINASLVYIATSADLLVSCVSLRGNSTSAN---STDCPADSARELADDARAELDSQLVLAREGLQEYADVFEEYRTSVTAVYASLIVFYEGATSYFDTENIDISGLGSWADIQNTDLILDDVTLPDISGILTDYANVATASEIWEQTHQAYGNFSDSLASV-------VFTLAEALEASTAELLSNISFTLEDYDPPRYANGSSHVESDALLESTVSEFEKTSDTFNSQALALLDDIGPWAPNLSFPAAQLLNYTFGVSKSVAAFLSSVPYHFEEFEKKNVILDSLGVSATALALLLLTVDYLFRCSSSLRLMLQFWSGAGLGIPDADLMAEKPIFDEQGIVASFSTALLKIILHPITTVVFYSTVTAILVYQTTVLYLPWYYDYVAGCVDHTEEGSFLTRAANTFAYNYASDEG 1380
            L+ENVT     SI+ SL  I+   D LVSCVSLRG         +  CP +SARELAD AR ELD QL +AR   QEYAD +E Y+ S    Y + I FY G     D   +DI+G G W+ +  +D  +  V +P  SG+L+D+ +  T+SEIWE    AYGN+SD ++S        V  L E   A T   L+NIS                  +S ALL+S  SEF+  +D ++S++LALL+ +GP  PNLSFPA+  LN T  V  +     S V Y F  F   +V  DS  VS   +ALLLL  DY+FR +SSLRL ++FWS  GLG+PDAD+  +K      G  A     ++++++HP TTV+F + V ++++Y    +Y P + DY AGCV+ ++ GSF  +   + AYNYA++EG
Sbjct:  492 LLENVTLEIPESISESLEDISALGDALVSCVSLRGEDDDGXXXAAAPCPVESARELADAAREELDYQLEVARAAFQEYADTYEAYKASAEESYDNWIAFYSGVVLLLDDHRVDITGSGPWSVLTVSDFTIPPVEVPSASGVLSDFGDALTSSEIWETVSGAYGNYSDGVSSRSGQITADVEALREEWRALTNAALANIS-----------------TDSSALLDSAGSEFQAEADGYSSRSLALLEGLGPAGPNLSFPASPSLNSTLLVGGASTVLPSPVDYTFAAFTATDVSFDSWVVSLGNIALLLLAADYIFRTASSLRLFVRFWSRGGLGLPDADVRVDKAAASAGGAAAGLRRGVVRVLIHPATTVLFSAVVLSLVLYNLASVYGPLFADYRAGCVEKSQNGSFFGQNVYSVAYNYAAEEG 900
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7725.15748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM39_ECTSI2.760e-8241.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7725contigH-paniculata_contig7725:1266..3484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.7
Seed ortholog evalue9.1e-78
Seed eggNOG ortholog2880.D7FM39
Hectar predicted targeting categoryother localisation
EggNOG OGs2CYDV@1,2S3SR@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_010560.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1380
Cds size1380
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.8223214-CDS-H-paniculata_contig7725:1265..13731622930958.8223214-CDS-H-paniculata_contig7725:1265..1373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7725 1266..1373 +
1691481527.7966905-CDS-H-paniculata_contig7725:1265..13731691481527.7966905-CDS-H-paniculata_contig7725:1265..1373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7725 1266..1373 +
1622930958.8604004-CDS-H-paniculata_contig7725:2212..34841622930958.8604004-CDS-H-paniculata_contig7725:2212..3484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7725 2213..3484 +
1691481527.810512-CDS-H-paniculata_contig7725:2212..34841691481527.810512-CDS-H-paniculata_contig7725:2212..3484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7725 2213..3484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7725.15748.1prot_H-paniculata_contig7725.15748.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7725 1266..3484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7725.15748.1

>prot_H-paniculata_contig7725.15748.1 ID=prot_H-paniculata_contig7725.15748.1|Name=mRNA_H-paniculata_contig7725.15748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=460bp
MNAGFAANATAAVEGLASYALERSAYDESYVANNTEVKFEDIDYLIENVT
EGFLPSINASLVYIATSADLLVSCVSLRGNSTSANSTDCPADSARELADD
ARAELDSQLVLAREGLQEYADVFEEYRTSVTAVYASLIVFYEGATSYFDT
ENIDISGLGSWADIQNTDLILDDVTLPDISGILTDYANVATASEIWEQTH
QAYGNFSDSLASVVFTLAEALEASTAELLSNISFTLEDYDPPRYANGSSH
VESDALLESTVSEFEKTSDTFNSQALALLDDIGPWAPNLSFPAAQLLNYT
FGVSKSVAAFLSSVPYHFEEFEKKNVILDSLGVSATALALLLLTVDYLFR
CSSSLRLMLQFWSGAGLGIPDADLMAEKPIFDEQGIVASFSTALLKIILH
PITTVVFYSTVTAILVYQTTVLYLPWYYDYVAGCVDHTEEGSFLTRAANT
FAYNYASDEG
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mRNA from alignment at H-paniculata_contig7725:1266..3484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7725.15748.1 ID=mRNA_H-paniculata_contig7725.15748.1|Name=mRNA_H-paniculata_contig7725.15748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2219bp|location=Sequence derived from alignment at H-paniculata_contig7725:1266..3484+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGCGGGCTTCGCAGCAAACGCAACAGCCGCGGTAGAGGGGCTCGC
TTCCTACGCTCTCGAGCGATCTGCCTACGACGAGTCTTACGTGGCGAACA
ATACCGAGGTAAAACACACAAAATGATGACAGAGGTAAGAAAATGAGACC
AGATAGGATGGAGGGGCGGGGGGCAGCAGCAAGGCACTCCCCAGCAAAAC
AGCTATGATTTCCCATTATTACATTGTTCCGTAGCTCGCTGTAAACCATT
ATCATCGTCTTCGACTTAGTCACCATCATGATGGCCGTATTCGTCTGTTT
CGTCGTTGTTACGCCAGCACCAGCTACAGTACCCTTGATAACCATGAATA
CGTCCACCAGCGCTGCACACCTACTATGAAGACTGGCGTGCCCATTTTCG
CTATTTAACTGTCATAATAGCATCAGCCATTAACTACGATGAACAAATCA
AACATGTATAGAGAGCTCCCTCTATATAAATTGGATGGTGACTCATCTAC
TGGAATTTCCGCCTGTCATTTCTGTATGTTTGTTGTTTTAGTAGGCGCCG
TTTGTTGAAATATTGACCTGGACCCTCCTACTGTACTTTCCATCTAGATG
CTGTGAATAGTAGAAGTGATATAATACATGGTGACGGCACATCAATTATT
GGAATACACGTTGAGTGTAGGATTCCTTCAAATTGTTTTCATTGAATTGT
GTGCCACCTAATTACGTGCATACATCTGGAAAAAATGGTGCATCATCCAA
CAACAGATGCCGACATGACGCCAACAGGTGAGACCCATTGAGAACGAATC
CATTATTTTGTACCATTTCATCAATGTCAGTCGAATGCACAATATTTGAA
GGTTAATAGAGGATTGTGGTTCATCAAACGTTAACTGAATGGTGCTTATC
CATGTCATTTATTTCAACTTTTCATCAAATTTTATAAATATCGTTAGGTA
AAATTTGAAGACATCGATTATCTAATCGAGAACGTGACCGAGGGGTTCCT
GCCATCGATAAACGCATCCCTTGTCTACATCGCAACGAGCGCCGATCTCC
TCGTGTCTTGCGTATCCCTGCGAGGCAATAGCACCAGCGCAAACTCCACC
GACTGTCCTGCTGACAGCGCGCGCGAGTTGGCAGACGACGCTCGGGCCGA
GCTCGATTCCCAGCTTGTCCTCGCCCGCGAGGGGTTACAAGAGTACGCCG
ATGTATTCGAGGAATATCGCACTTCCGTCACGGCTGTGTATGCCAGCTTG
ATAGTGTTCTACGAAGGAGCAACGAGCTACTTCGACACAGAAAATATTGA
CATCAGTGGTCTTGGAAGTTGGGCTGATATTCAGAACACCGACTTGATAT
TGGACGATGTCACCTTACCCGATATCTCTGGTATCCTAACCGACTATGCT
AACGTGGCAACAGCATCTGAAATATGGGAACAGACGCACCAAGCATACGG
TAATTTCTCCGACAGCTTGGCGAGCGTCGTTTTCACCCTAGCGGAGGCAT
TGGAAGCATCTACAGCCGAACTTTTGTCCAACATCAGCTTCACGCTCGAA
GACTACGATCCACCACGCTACGCCAATGGATCTAGCCATGTCGAATCGGA
TGCTCTCTTGGAATCCACCGTGTCGGAGTTCGAGAAAACTTCCGACACGT
TCAACTCCCAGGCGTTGGCTCTGCTAGACGATATCGGTCCCTGGGCGCCG
AACCTGTCTTTTCCAGCAGCGCAGTTACTCAACTACACCTTCGGAGTCAG
TAAGTCCGTCGCGGCCTTTCTATCATCGGTGCCCTACCACTTCGAAGAGT
TCGAAAAAAAGAATGTGATTCTCGACTCCTTGGGAGTATCGGCTACCGCA
CTCGCCTTGCTCCTTCTCACAGTGGATTACCTATTCCGGTGCAGTTCGAG
CTTGCGCTTGATGCTACAATTTTGGAGTGGCGCTGGGCTAGGTATACCTG
ATGCGGACCTTATGGCGGAAAAGCCAATCTTCGACGAGCAGGGCATCGTT
GCAAGTTTCTCTACAGCGCTGTTGAAAATAATACTGCACCCGATAACCAC
CGTGGTGTTTTATTCAACTGTGACCGCTATCCTGGTGTACCAAACTACGG
TGTTGTACTTGCCGTGGTACTATGACTATGTGGCTGGGTGTGTGGATCAT
ACCGAGGAAGGGAGCTTCCTCACGCGAGCCGCCAACACATTCGCTTACAA
CTACGCTTCCGACGAAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig7725:1266..3484+

>mRNA_H-paniculata_contig7725.15748.1 ID=mRNA_H-paniculata_contig7725.15748.1|Name=mRNA_H-paniculata_contig7725.15748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2760bp|location=Sequence derived from alignment at H-paniculata_contig7725:1266..3484+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGCGGGCTTCGCAGCAAACGCAACAGCCGCGGTAGAGGGGCTCGC
TTCCTACGCTCTCGAGCGATCTGCCTACGACGAGTCTTACGTGGCGAACA
ATACCGAGATGAACGCGGGCTTCGCAGCAAACGCAACAGCCGCGGTAGAG
GGGCTCGCTTCCTACGCTCTCGAGCGATCTGCCTACGACGAGTCTTACGT
GGCGAACAATACCGAGGTAAAATTTGAAGACATCGATTATCTAATCGAGA
ACGTGACCGAGGGGTTCCTGCCATCGATAAACGCATCCCTTGTCTACATC
GCAACGAGCGCCGATCTCCTCGTGTCTTGCGTATCCCTGCGAGGCAATAG
CACCAGCGCAAACTCCACCGACTGTCCTGCTGACAGCGCGCGCGAGTTGG
CAGACGACGCTCGGGCCGAGCTCGATTCCCAGCTTGTCCTCGCCCGCGAG
GGGTTACAAGAGTACGCCGATGTATTCGAGGAATATCGCACTTCCGTCAC
GGCTGTGTATGCCAGCTTGATAGTGTTCTACGAAGGAGCAACGAGCTACT
TCGACACAGAAAATATTGACATCAGTGGTCTTGGAAGTTGGGCTGATATT
CAGAACACCGACTTGATATTGGACGATGTCACCTTACCCGATATCTCTGG
TATCCTAACCGACTATGCTAACGTGGCAACAGCATCTGAAATATGGGAAC
AGACGCACCAAGCATACGGTAATTTCTCCGACAGCTTGGCGAGCGTCGTT
TTCACCCTAGCGGAGGCATTGGAAGCATCTACAGCCGAACTTTTGTCCAA
CATCAGCTTCACGCTCGAAGACTACGATCCACCACGCTACGCCAATGGAT
CTAGCCATGTCGAATCGGATGCTCTCTTGGAATCCACCGTGTCGGAGTTC
GAGAAAACTTCCGACACGTTCAACTCCCAGGCGTTGGCTCTGCTAGACGA
TATCGGTCCCTGGGCGCCGAACCTGTCTTTTCCAGCAGCGCAGTTACTCA
ACTACACCTTCGGAGTCAGTAAGTCCGTCGCGGCCTTTCTATCATCGGTG
CCCTACCACTTCGAAGAGTTCGAAAAAAAGAATGTGATTCTCGACTCCTT
GGGAGTATCGGCTACCGCACTCGCCTTGCTCCTTCTCACAGTGGATTACC
TATTCCGGTGCAGTTCGAGCTTGCGCTTGATGCTACAATTTTGGAGTGGC
GCTGGGCTAGGTATACCTGATGCGGACCTTATGGCGGAAAAGCCAATCTT
CGACGAGCAGGGCATCGTTGCAAGTTTCTCTACAGCGCTGTTGAAAATAA
TACTGCACCCGATAACCACCGTGGTGTTTTATTCAACTGTGACCGCTATC
CTGGTGTACCAAACTACGGTGTTGTACTTGCCGTGGTACTATGACTATGT
GGCTGGGTGTGTGGATCATACCGAGGAAGGGAGCTTCCTCACGCGAGCCG
CCAACACATTCGCTTACAACTACGCTTCCGACGAAGGGGTAAAATTTGAA
GACATCGATTATCTAATCGAGAACGTGACCGAGGGGTTCCTGCCATCGAT
AAACGCATCCCTTGTCTACATCGCAACGAGCGCCGATCTCCTCGTGTCTT
GCGTATCCCTGCGAGGCAATAGCACCAGCGCAAACTCCACCGACTGTCCT
GCTGACAGCGCGCGCGAGTTGGCAGACGACGCTCGGGCCGAGCTCGATTC
CCAGCTTGTCCTCGCCCGCGAGGGGTTACAAGAGTACGCCGATGTATTCG
AGGAATATCGCACTTCCGTCACGGCTGTGTATGCCAGCTTGATAGTGTTC
TACGAAGGAGCAACGAGCTACTTCGACACAGAAAATATTGACATCAGTGG
TCTTGGAAGTTGGGCTGATATTCAGAACACCGACTTGATATTGGACGATG
TCACCTTACCCGATATCTCTGGTATCCTAACCGACTATGCTAACGTGGCA
ACAGCATCTGAAATATGGGAACAGACGCACCAAGCATACGGTAATTTCTC
CGACAGCTTGGCGAGCGTCGTTTTCACCCTAGCGGAGGCATTGGAAGCAT
CTACAGCCGAACTTTTGTCCAACATCAGCTTCACGCTCGAAGACTACGAT
CCACCACGCTACGCCAATGGATCTAGCCATGTCGAATCGGATGCTCTCTT
GGAATCCACCGTGTCGGAGTTCGAGAAAACTTCCGACACGTTCAACTCCC
AGGCGTTGGCTCTGCTAGACGATATCGGTCCCTGGGCGCCGAACCTGTCT
TTTCCAGCAGCGCAGTTACTCAACTACACCTTCGGAGTCAGTAAGTCCGT
CGCGGCCTTTCTATCATCGGTGCCCTACCACTTCGAAGAGTTCGAAAAAA
AGAATGTGATTCTCGACTCCTTGGGAGTATCGGCTACCGCACTCGCCTTG
CTCCTTCTCACAGTGGATTACCTATTCCGGTGCAGTTCGAGCTTGCGCTT
GATGCTACAATTTTGGAGTGGCGCTGGGCTAGGTATACCTGATGCGGACC
TTATGGCGGAAAAGCCAATCTTCGACGAGCAGGGCATCGTTGCAAGTTTC
TCTACAGCGCTGTTGAAAATAATACTGCACCCGATAACCACCGTGGTGTT
TTATTCAACTGTGACCGCTATCCTGGTGTACCAAACTACGGTGTTGTACT
TGCCGTGGTACTATGACTATGTGGCTGGGTGTGTGGATCATACCGAGGAA
GGGAGCTTCCTCACGCGAGCCGCCAACACATTCGCTTACAACTACGCTTC
CGACGAAGGG
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