|
|
Homology
BLAST of mRNA_H-paniculata_contig7720.15742.1 vs. uniprot
Match: D8LC94_ECTSI (SET domain and mariner transposase fusion n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC94_ECTSI) HSP 1 Score: 119 bits (297), Expect = 4.910e-24 Identity = 59/99 (59.60%), Postives = 68/99 (68.69%), Query Frame = 1
Query: 1906 PDRPPGASAVKTVARAETVAIVEYAHDPDRGVDLRSCGTQAVGSVAAVQANISVPGMIGTHSALDTDLLRARDGAWTAGVGYRPGEAYAKWGRFPCETP 2202
P P + VK + R E +A VEYAHDP+RG+DLRSCGTQ VG+ AA QANI+V GM GTHSA+ G T GVGY+PGE YAKWGRF CE P
Sbjct: 472 PSIEPQENMVKVLVRTEALASVEYAHDPERGLDLRSCGTQIVGNSAATQANIAVAGMSGTHSAVGNGF--GAQGPRTPGVGYQPGEPYAKWGRFACEMP 568
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 118.6 |
| Seed ortholog evalue | 1.2e-23 |
| Seed eggNOG ortholog | 2880.D8LC94 |
| KEGG rclass | RC00003,RC00060,RC00181,RC00496 |
| KEGG ko | ko:K11419,ko:K11433 |
| KEGG Reaction | R03875,R03938,R04866,R04867 |
| KEGG Pathway | ko00310,map00310 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0070013 |
| EggNOG free text desc. | SET domain |
| EggNOG OGs | COG2940@1,KOG1082@2759 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-14_005610.1 |
| EC | 2.1.1.43 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03036 |
| Exons | 6 |
| Model size | 2202 |
| Cds size | 2202 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7720.15742.1 >prot_H-paniculata_contig7720.15742.1 ID=prot_H-paniculata_contig7720.15742.1|Name=mRNA_H-paniculata_contig7720.15742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=734bp
MFARDGKGASDDPYNFDIAADDRRYGVDTKTSSGNSQTKLGSSKSLNSGL RVALPSDAIDHVGSSMATSSTQHIIPASETTSFRASAPAGIPSALDKAMG FLNKYKEGGSVRNSDASTPTTTANTPIGAFRHSSGRVNKVRDKPNNGYED DDDIDISLSSEDAGIGVTTQKKLMTTSELVSGLPKRVDPDVDKEHGMVAT SRSLTGIRSSAPFLTARDLGIRVDEGLGKCVTAPKAAVSPIGLGRNINPA LSMVNSSIKEYTEATKTSSGLRLSMNIPGSPRSDALKDRGKGHRSTNEGD SHDASNVGSSGSRARSNSRGTMFQELDTTSDQRSLGTSPEGGSPFRRDQS LGRCGHPGSGGTMGNVVSFNDLAAITGHLAVPAADTVKSAISGGKGGGAQ VFQKEKEKEEKEEHDDDGDDDYEDDDFEELEATIESGDCSGSLPGQAKSN GKLSDSTNGIRDIMLLTMAIQPSTIQTAPEDGYDSPMDDRGQGTNKRDPS QAWNEPADDSIIRRPHLSSEKVDRGIRPDQNVSRSANSPTYIRTSPSRKI ANEVHDGDGDASGEETKAATVATMTNASVNNQMSKEHNSLARIKGPEKSR APVSRGRETTSNCGTNITVLTNEGVVIDRSSEVRLPDRPPGASAVKTVAR AETVAIVEYAHDPDRGVDLRSCGTQAVGSVAAVQANISVPGMIGTHSALD TDLLRARDGAWTAGVGYRPGEAYAKWGRFPCETP back to topmRNA from alignment at H-paniculata_contig7720:6691..10541- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig7720.15742.1 ID=mRNA_H-paniculata_contig7720.15742.1|Name=mRNA_H-paniculata_contig7720.15742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3851bp|location=Sequence derived from alignment at H-paniculata_contig7720:6691..10541- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTTCGCTCGCGATGGAAAGGGAGCGAGCGATGATCCCTACAACTTCGA
TATAGCAGCGGATGATCGACGGTATGGTGTTGATACAAAAACAAGCAGTG
GCAATTCTCAGACGAAGCTTGGTAGCAGCAAGTTAAGCCGGGGTGGCTCA
GGTGATGCAGGGCTACGGGAGCAGCCTAAAGTTCGCGGGACGAAGTCATC
TTCAGGCGATAGGGTACGTTCGAACTCCGCCTTCTCAAAAACGTAGATGT
GAGCCGTACCGAGATAGTTGGACGCATTATCACGAACACGAAAGTTATTT
ATGTGGTGCACATCGATCATGCTCACCCAGCGCATCTGCACCGTCTGTTG
TCCGTTGATATAATATTACTTTGTGCAGCACCTCCTGCCGTATCACACGG
TAGGAGTTACAGAGTAAGAGTATACTGCCGACGCGATCTACATTAGGCGA
TACATCATAGATTTGTAAGTGTACGGTCAAGCTCACACACTTCATTTACT
TCCTGAACTGTTCCTATATCCTCCGGTCAAAATGTGCCGTGGGCGGCGTC
GATCCATTCTAAGCGGCGTCTTTCGCGGGCCTACAATCTATAGAAGTTGG
CAAATTTTGCGTATGCACCAATACATTCTCGGTTGCATCCTCACCTGTGT
CCGCCAGGATGATGGCAAGCATACGAACAGGTCGCTGAACTCTGGACTTC
GTGTTGCACTGCCGTCGGATGCGATTGATCATGTCGGGAGTTCCATGGCT
ACGTCATCGACCCAGCATATCATTCCGGCCTCGGAAACCACTTCATTTCG
AGCGTCAGCTCCGGCGGGGATTCCGTCCGCTCTTGATAAGGCGATGGGCT
TCCTGAACAAGTACAAGGAAGGTGGTAGTGTTAGGAATAGCGATGCTAGC
ACTCCGACGACGACGGCCAACACACCGATAGGTGCGTTCAGACATTCGAG
TGGTCGTGTCAACAAAGTCAGAGATAAACCAAATAATGGATATGAGGATG
ACGATGATATCGACATTTCGCTTAGTAGCGAAGACGCTGGCATCGGGGTT
ACGACTCAAAAGAAACTAATGACAACGTCCGAGCTCGTGAGTGGATTGCC
AAAGAGGGTGGATCCGGATGTTGATGTAGTTGTAGCGGGGGTGGAGTCGA
CATTTCGACGACGAAACGACGAGTTAAAAGTGTCGGACCCTCAAGAGAAA
GAACATGGTATGGTGGCTACGAGTCGATCGCTTACTGGAATACGATCTTC
TGCTCCATTTCTGACTGCCCGGGACTTGGGTATCCGTGTTGATGAGGGTT
TGGGCAAGTGTGTGACAGCACCGAAGGCTGCAGTATCGCCGATTGGGTTG
GGACGCAATATCAACCCAGCCTTGAGCATGGTTAATTCTTCTATCAAGGA
GTATACAGAGGCCACCAAGACTTCTTCCGGGTTGCGTTTATCGATGAATA
TCCCGGGATCCCCGCGTTCTGATGCGTTGAAAGACAGAGGTAAAGGGCAC
AGAAGCACCAACGAAGGCGACAGCCACGACGCCAGCAATGTTGGGTCATC
AGGTTCCAGGGCTAGATCGAACAGCCGAGGCACCATGTTCCAAGAACTCG
ATACCACCTCCGATCAGCGATCATTGGGAACATCGTTCTCCGGGGTTGAG
AGCATTTGCGAGATTAATGCTGAGGGCAGTTCAAGCTTAGTAAGCCCAAC
AGTCGACCAGATTACAACTACAAACTGTCTACCAGTTAAACTTCTCCCAA
CAGACAGGGAATCTAGTCCAGAAGGGGGCAGTCCCTTTAGGAGGGACCAG
AGTCTTGGACGATGCGGGCACCCTGGGAGCGGCGGCACGATGGGCAACGT
GGTCTCGTTTAACGATTTGGCTGCCATTACCGGTCACCTCGCGGTCCCGG
CTGCCGACACAGTAAAGAGTGCAATTTCGGGGGGGAAAGGAGGCGGGGCT
CAAGTATTCCAGAAAGAAAAAGAAAAAGAAGAGAAGGAGGAACATGATGA
CGATGGTGATGATGACTACGAAGACGATGACTTCGAGGAGCTGGAAGCGA
CCATAGAGAGCGGTGATTGTAGTGGTTCACTGCCAGGTCAAGCAAAGTCG
AACGGAAAACTGTCGGATAGTACAAATGGAATCCGCGATATTATGCTGTT
GACAATGGCAATTCAACCGTCGACTATCCAAACAGCCCCAGAAGATGGAT
ACGATAGTCCGATGGACGATCGGGGGCAGGGGACCAACAAACGGGATCCG
TCTCAGGCGTGGAATGAACCCGCGGATGACAGCATCATCAGGAGACCACA
TTTGTCATCTGAAAAGGTCGATAGAGGTATTAGACCGGACCAAAACGTTT
CTCGCTCAGCGAACTCGCCCACCTACATAAGAACGAGCCCAAGCAGAAAA
ATAGCCAACGAGGTTCATGATGGCGACGGCGATGCATCTGGGGAAGAAAC
AAAAGCGGCGTGGAGTGTGCCGTTCATAGATAGATCAAGGCGAGGCGGCC
AATGCCACGTAGACTTCGAAAACAGGACTGCTAGGACGGTGGCGACGATG
ACAAACGCATCTGTAAACAATCAAATGTCAAAGGAACACAACAGCCTCGC
GCGAATTAAAGGCCCAGAAAAAAGTAGAGCACCAGTGTCAAGGGGTCGAG
AAACGACCTCGAATTGTGGAACCAATATTACTGTGTTGACAAATGAAGGT
GTGGTGATTGATCGATCCTCCGAGGTGAGACTTCCAGATCGACCGCCTGG
TGCGTCAGCCGTGAAGACTGTCGCGCGGGCCGAGACTGTGGCGATCGTTG
AGTACGCCCATGACCCGGACAGGGGTGTTGATCTACGAAGCTGCGGCACG
CAGGTGACACAATCCAAGGTCTTTGCTTGTATTCATTGCAGGAAAATATC
CCAAAACGGTTTATCAGGCGAAAAAAAATGGAATCAGATTCTAGCGGCAG
ATTGCGAGCATGCGACGTATGAAGGTAGATGCACCTCTGTTCGTTTTGTT
GGGCGATTGTATCATAGCCGGGCGGCGAATAGACGATTCAACGACTAATG
GTAAATGGCGAACCGGGTCCGATTGAGCGGTGTGTGTATTTCGTTCGGGT
TATCTACCATTGACGCAAATGGTTATATGTATAGACCAGTGCTTCCCACA
AGAGACTGCACAGGTCAGCCCATAAAGAGGAATACTAGCTATTAATCATC
ACCCTTGGATTGATACGCCAACCGGATTCTGCCGTGGGGTTTTGCGTATC
CCGGGTAACCAAATGTTGTACAAGTGTCAGGCGTGACTATACCTTAAGTG
CCGCATGAAATTTTAATCTTTGCGCGCAAGTATAGACAACGTCGCGCTAC
ACAAAGCGAACACGACGCTTCATGTATGACAACCTTTGAGTATAATCTGC
TTACTTAATTCTGGAGGAATATGCTCATTAGTATTTTATCTCTAGGACGT
TGCAACTATCCGTGCAGACATCCTTTTGGGTGAGAATTCTTCGACCGAGG
TCAACAAGCTCACAGGATATTATACTGCATGAAATTCCCTGTTATTCGCC
GATGCCTCTGTGACTAATGAATGTCACCCACATTGTTGAACAGCGTTGCT
GTTTGTGATTCCATCAGGACCGACCGAATCGCTTAGTTTCTCGTGTACTC
ACGTGTCTTGTTCGGCGGGCATAGGCAGTGGGTAGCGTAGCTGCTGTGCA
GGCAAACATATCGGTGCCAGGTATGATCGGTACACATTCAGCGTTAGATA
CCGATCTCCTGAGAGCTCGCGATGGAGCTTGGACGGCTGGTGTCGGATAT
CGACCAGGTGAAGCATACGCGAAATGGGGCCGTTTCCCATGTGAAACCCC
T back to topCoding sequence (CDS) from alignment at H-paniculata_contig7720:6691..10541- >mRNA_H-paniculata_contig7720.15742.1 ID=mRNA_H-paniculata_contig7720.15742.1|Name=mRNA_H-paniculata_contig7720.15742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4404bp|location=Sequence derived from alignment at H-paniculata_contig7720:6691..10541- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTTCGCTCGCGATGGAAAGGGAGCGAGCGATGATCCCTACAACTTCGA TATAGCAGCGGATGATCGACGGTATGGTGTTGATACAAAAACAAGCAGTG GCAATTCTCAGACGAAGCTTGGTAGCAGCAAATGTTCGCTCGCGATGGAA AGGGAGCGAGCGATGATCCCTACAACTTCGATATAGCAGCGGATGATCGA CGGTATGGTGTTGATACAAAAACAAGCAGTGGCAATTCTCAGACGAAGCT TGGTAGCAGCAAGTCGCTGAACTCTGGACTTCGTGTTGCACTGCCGTCGG ATGCGATTGATCATGTCGGGAGTTCCATGGCTACGTCATCGACCCAGCAT ATCATTCCGGCCTCGGAAACCACTTCATTTCGAGCGTCAGCTCCGGCGGG GATTCCGTCCGCTCTTGATAAGGCGATGGGCTTCCTGAACAAGTACAAGG AAGGTGGTAGTGTTAGGAATAGCGATGCTAGCACTCCGACGACGACGGCC AACACACCGATAGGTGCGTTCAGACATTCGAGTGGTCGTGTCAACAAAGT CAGAGATAAACCAAATAATGGATATGAGGATGACGATGATATCGACATTT CGCTTAGTAGCGAAGACGCTGGCATCGGGGTTACGACTCAAAAGAAACTA ATGACAACGTCCGAGCTCGTGAGTGGATTGCCAAAGAGGGTGGATCCGGA TGTTGATGTCGCTGAACTCTGGACTTCGTGTTGCACTGCCGTCGGATGCG ATTGATCATGTCGGGAGTTCCATGGCTACGTCATCGACCCAGCATATCAT TCCGGCCTCGGAAACCACTTCATTTCGAGCGTCAGCTCCGGCGGGGATTC CGTCCGCTCTTGATAAGGCGATGGGCTTCCTGAACAAGTACAAGGAAGGT GGTAGTGTTAGGAATAGCGATGCTAGCACTCCGACGACGACGGCCAACAC ACCGATAGGTGCGTTCAGACATTCGAGTGGTCGTGTCAACAAAGTCAGAG ATAAACCAAATAATGGATATGAGGATGACGATGATATCGACATTTCGCTT AGTAGCGAAGACGCTGGCATCGGGGTTACGACTCAAAAGAAACTAATGAC AACGTCCGAGCTCGTGAGTGGATTGCCAAAGAGGGTGGATCCGGATGTTG ATAAAGAACATGGTATGGTGGCTACGAGTCGATCGCTTACTGGAATACGA TCTTCTGCTCCATTTCTGACTGCCCGGGACTTGGGTATCCGTGTTGATGA GGGTTTGGGCAAGTGTGTGACAGCACCGAAGGCTGCAGTATCGCCGATTG GGTTGGGACGCAATATCAACCCAGCCTTGAGCATGGTTAATTCTTCTATC AAGGAGTATACAGAGGCCACCAAGACTTCTTCCGGGTTGCGTTTATCGAT GAATATCCCGGGATCCCCGCGTTCTGATGCGTTGAAAGACAGAGGTAAAG GGCACAGAAGCACCAACGAAGGCGACAGCCACGACGCCAGCAATGTTGGG TCATCAGGTTCCAGGGCTAGATCGAACAGCCGAGGCACCATGTTCCAAGA ACTCGATACCACCTCCGATCAGCGATCATTGGGAACATCAAAGAACATGG TATGGTGGCTACGAGTCGATCGCTTACTGGAATACGATCTTCTGCTCCAT TTCTGACTGCCCGGGACTTGGGTATCCGTGTTGATGAGGGTTTGGGCAAG TGTGTGACAGCACCGAAGGCTGCAGTATCGCCGATTGGGTTGGGACGCAA TATCAACCCAGCCTTGAGCATGGTTAATTCTTCTATCAAGGAGTATACAG AGGCCACCAAGACTTCTTCCGGGTTGCGTTTATCGATGAATATCCCGGGA TCCCCGCGTTCTGATGCGTTGAAAGACAGAGGTAAAGGGCACAGAAGCAC CAACGAAGGCGACAGCCACGACGCCAGCAATGTTGGGTCATCAGGTTCCA GGGCTAGATCGAACAGCCGAGGCACCATGTTCCAAGAACTCGATACCACC TCCGATCAGCGATCATTGGGAACATCTCCAGAAGGGGGCAGTCCCTTTAG GAGGGACCAGAGTCTTGGACGATGCGGGCACCCTGGGAGCGGCGGCACGA TGGGCAACGTGGTCTCGTTTAACGATTTGGCTGCCATTACCGGTCACCTC GCGGTCCCGGCTGCCGACACAGTAAAGAGTGCAATTTCGGGGGGGAAAGG AGGCGGGGCTCAAGTATTCCAGAAAGAAAAAGAAAAAGAAGAGAAGGAGG AACATGATGACGATGGTGATGATGACTACGAAGACGATGACTTCGAGGAG CTGGAAGCGACCATAGAGAGCGGTGATTGTAGTGGTTCACTGCCAGGTCA AGCAAAGTCGAACGGAAAACTGTCGGATAGTACAAATGGAATCCGCGATA TTATGCTGTTGACAATGGCAATTCAACCGTCGACTATCCAAACAGCCCCA GAAGATGGATACGATAGTCCGATGGACGATCGGGGGCAGGGGACCAACAA ACGGGATCCGTCTCAGGCGTGGAATGAACCCGCGGATGACAGCATCATCA GGAGACCACATTTGTCATCTGAAAAGGTCGATAGAGGTATTAGACCGGAC CAAAACGTTTCTCGCTCAGCGAACTCGCCCACCTACATAAGAACGAGCCC AAGCAGAAAAATAGCCAACGAGGTTCATGATGGCGACGGCGATGCATCTG GGGAAGAAACAAAAGCGGCTCCAGAAGGGGGCAGTCCCTTTAGGAGGGAC CAGAGTCTTGGACGATGCGGGCACCCTGGGAGCGGCGGCACGATGGGCAA CGTGGTCTCGTTTAACGATTTGGCTGCCATTACCGGTCACCTCGCGGTCC CGGCTGCCGACACAGTAAAGAGTGCAATTTCGGGGGGGAAAGGAGGCGGG GCTCAAGTATTCCAGAAAGAAAAAGAAAAAGAAGAGAAGGAGGAACATGA TGACGATGGTGATGATGACTACGAAGACGATGACTTCGAGGAGCTGGAAG CGACCATAGAGAGCGGTGATTGTAGTGGTTCACTGCCAGGTCAAGCAAAG TCGAACGGAAAACTGTCGGATAGTACAAATGGAATCCGCGATATTATGCT GTTGACAATGGCAATTCAACCGTCGACTATCCAAACAGCCCCAGAAGATG GATACGATAGTCCGATGGACGATCGGGGGCAGGGGACCAACAAACGGGAT CCGTCTCAGGCGTGGAATGAACCCGCGGATGACAGCATCATCAGGAGACC ACATTTGTCATCTGAAAAGGTCGATAGAGGTATTAGACCGGACCAAAACG TTTCTCGCTCAGCGAACTCGCCCACCTACATAAGAACGAGCCCAAGCAGA AAAATAGCCAACGAGGTTCATGATGGCGACGGCGATGCATCTGGGGAAGA AACAAAAGCGGCGACGGTGGCGACGATGACAAACGCATCTGTAAACAATC AAATGTCAAAGGAACACAACAGCCTCGCGCGAATTAAAGGCCCAGAAAAA AGTAGAGCACCAGTGTCAAGGGGTCGAGAAACGACCTCGAATTGTGGAAC CAATATTACTGTGTTGACAAATGAAGGTGTGGTGATTGATCGATCCTCCG AGGTGAGACTTCCAGATCGACCGCCTGGTGCGTCAGCCGTGAAGACTGTC GCGCGGGCCGAGACTGTGGCGATCGTTGAGTACGCCCATGACCCGGACAG GGGTGTTGATCTACGAAGCTGCGGCACGCAGGACGGTGGCGACGATGACA AACGCATCTGTAAACAATCAAATGTCAAAGGAACACAACAGCCTCGCGCG AATTAAAGGCCCAGAAAAAAGTAGAGCACCAGTGTCAAGGGGTCGAGAAA CGACCTCGAATTGTGGAACCAATATTACTGTGTTGACAAATGAAGGTGTG GTGATTGATCGATCCTCCGAGGTGAGACTTCCAGATCGACCGCCTGGTGC GTCAGCCGTGAAGACTGTCGCGCGGGCCGAGACTGTGGCGATCGTTGAGT ACGCCCATGACCCGGACAGGGGTGTTGATCTACGAAGCTGCGGCACGCAG GCAGTGGGTAGCGTAGCTGCTGTGCAGGCAAACATATCGGTGCCAGGTAT GATCGGTACACATTCAGCGTTAGATACCGATCTCCTGAGAGCTCGCGATG GAGCTTGGACGGCTGGTGTCGGATATCGACCAGGTGAAGCATACGCGAAA TGGGGCCGTTTCCCATGTGAAACCCCTGCAGTGGGTAGCGTAGCTGCTGT GCAGGCAAACATATCGGTGCCAGGTATGATCGGTACACATTCAGCGTTAG ATACCGATCTCCTGAGAGCTCGCGATGGAGCTTGGACGGCTGGTGTCGGA TATCGACCAGGTGAAGCATACGCGAAATGGGGCCGTTTCCCATGTGAAAC CCCT back to top
|