mRNA_H-paniculata_contig77199.15738.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig77199.15738.1
Unique NamemRNA_H-paniculata_contig77199.15738.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig77199.15738.1 vs. uniprot
Match: D7G4Q8_ECTSI (Geranylgeranyltransferase type 1 beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q8_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.760e-15
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 QECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDTTRARPFHPSCQNRVIGKWSCQP 174
            Q  GFQGR NK  D+CCSFWVGATL LL    LVD  RAR FH SCQNR+ G ++  P
Sbjct:  238 QGVGFQGRPNKPEDSCCSFWVGATLALLDGLDLVDDGRARQFHVSCQNRICGGFAKAP 295
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BLAST of mRNA_H-paniculata_contig77199.15738.1 vs. uniprot
Match: A0A6H5KFN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.770e-13
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   10 GFQGRVNKAIDTCCSFWVGATLILLGEFHLVDTTRARPFHPSCQNRVIGKWSCQP 174
            GFQGR NK  D+CCSFWVGATL LL    LVD  RAR FH SC N + G ++  P
Sbjct:  346 GFQGRPNKPEDSCCSFWVGATLALLDGLDLVDEARARQFHVSCHNPICGGFAKAP 400
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BLAST of mRNA_H-paniculata_contig77199.15738.1 vs. uniprot
Match: A0A6B2L8R2_9EUKA (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L8R2_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 6.260e-12
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 QECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDTTRARPFHPSCQNRVIG--KWSCQPA 177
            QE GF GR NK  DTC SFWVGA+L +LG +HLVD    R +  SCQ +  G  KWS Q A
Sbjct:  232 QEQGFNGRPNKIQDTCYSFWVGASLKILGAYHLVDEQNTRKYTLSCQKKNGGFAKWSSQSA 292
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BLAST of mRNA_H-paniculata_contig77199.15738.1 vs. uniprot
Match: A0A7J7KDD4_BUGNE (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KDD4_BUGNE)

HSP 1 Score: 67.4 bits (163), Expect = 1.920e-11
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 QECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDTTRARPFHPSCQNRVIG---KWS 165
            QE GFQGR NK IDTC SFW+GATL +L  F  VDT+  R +  S Q+ V+G   KW+
Sbjct:  243 QESGFQGRPNKPIDTCYSFWIGATLRILDSFQFVDTSANRKWLLSVQDNVVGGFGKWT 300
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BLAST of mRNA_H-paniculata_contig77199.15738.1 vs. uniprot
Match: UPI0014257D88 (geranylgeranyl transferase type-1 subunit beta-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257D88)

HSP 1 Score: 65.9 bits (159), Expect = 6.160e-11
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 QECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDTTRARPFHPSCQNRVIGKWSCQP 174
            Q+ GFQGR NK +DTC SFWVGATL LL  FHLVD    R +  S Q+  +G +S  P
Sbjct:  247 QQSGFQGRPNKPVDTCYSFWVGATLKLLDMFHLVDFNCNRTYILSTQDETMGGFSKWP 304
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BLAST of mRNA_H-paniculata_contig77199.15738.1 vs. uniprot
Match: UPI001ED88C98 (geranylgeranyl transferase type-1 subunit beta n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED88C98)

HSP 1 Score: 65.5 bits (158), Expect = 8.440e-11
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 QECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDTTRARPFHPSCQNRVIGKWS 165
            Q  GFQGR NK +DTC SFWVGATL LLG FHLVD  + + +  S Q+ + G +S
Sbjct:  250 QISGFQGRPNKPVDTCYSFWVGATLKLLGIFHLVDYQQNKDYLLSTQDPITGGFS 304
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BLAST of mRNA_H-paniculata_contig77199.15738.1 vs. uniprot
Match: A0A4D5RUZ1_IXOSC (Protein geranylgeranyltransferase type i beta subunit n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A4D5RUZ1_IXOSC)

HSP 1 Score: 64.3 bits (155), Expect = 9.330e-11
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 QECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDTTRARPFHPSCQNRVIGKWSCQP 174
            Q+ GFQGR NK IDTC SFWVGA L LLG F  V++ R   F  S Q++ +G +S  P
Sbjct:   85 QQSGFQGRPNKPIDTCYSFWVGAALELLGAFKFVESGRNLEFLDSTQDQFVGGFSKWP 142
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BLAST of mRNA_H-paniculata_contig77199.15738.1 vs. uniprot
Match: UPI0001CBA22C (geranylgeranyl transferase type-1 subunit beta-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA22C)

HSP 1 Score: 65.1 bits (157), Expect = 1.160e-10
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 QECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDTTRARPFHPSCQNRVIG---KW-SCQP 174
            Q+ GFQGR NK +DTC SFWVGATL LLG F  +D +  R +  S Q+ V G   KW  C P
Sbjct:  247 QQSGFQGRPNKPVDTCYSFWVGATLKLLGAFEQIDYSSNRNYILSTQDNVTGGFSKWPDCHP 308
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BLAST of mRNA_H-paniculata_contig77199.15738.1 vs. uniprot
Match: A0A6P9AFI5_THRPL (Geranylgeranyl transferase type-1 subunit beta n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P9AFI5_THRPL)

HSP 1 Score: 64.7 bits (156), Expect = 1.570e-10
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 QECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDTTRARPFHPSCQNRVIGKWS 165
            QE GFQGR NK +DTC SFW+GATL ++  + L+D    R F  + Q+ +IG +S
Sbjct:  243 QESGFQGRPNKPVDTCYSFWIGATLKIIDSYELIDKAENRNFIMATQSNIIGGFS 297
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BLAST of mRNA_H-paniculata_contig77199.15738.1 vs. uniprot
Match: A0A8K0P2M1_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0P2M1_LADFU)

HSP 1 Score: 64.7 bits (156), Expect = 1.590e-10
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 QECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDTTRARPFHPSCQNRVIGKWS 165
            Q  GFQGR NK +DTC SFWVGATL LLG +HL+D  + +    S Q+  IG +S
Sbjct:  249 QMSGFQGRPNKPVDTCYSFWVGATLKLLGVYHLIDYDQNKELLLSSQDSTIGGFS 303
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77199.15738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Q8_ECTSI2.760e-1562.07Geranylgeranyltransferase type 1 beta n=1 Tax=Ecto... [more]
A0A6H5KFN4_9PHAE1.770e-1360.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6B2L8R2_9EUKA6.260e-1255.74Geranylgeranyl transferase type-1 subunit beta n=1... [more]
A0A7J7KDD4_BUGNE1.920e-1155.17Geranylgeranyl transferase type-1 subunit beta n=1... [more]
UPI0014257D886.160e-1155.17geranylgeranyl transferase type-1 subunit beta-lik... [more]
UPI001ED88C988.440e-1156.36geranylgeranyl transferase type-1 subunit beta n=1... [more]
A0A4D5RUZ1_IXOSC9.330e-1153.45Protein geranylgeranyltransferase type i beta subu... [more]
UPI0001CBA22C1.160e-1053.23geranylgeranyl transferase type-1 subunit beta-lik... [more]
A0A6P9AFI5_THRPL1.570e-1049.09Geranylgeranyl transferase type-1 subunit beta n=1... [more]
A0A8K0P2M1_LADFU1.590e-1054.55Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig77199contigH-paniculata_contig77199:251..466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue2.3e-12
Seed eggNOG ortholog2880.D7G4Q8
Preferred namePGGT1B
KEGG koko:K11713
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004662,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005953,GO:0005968,GO:0006464,GO:0006807,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0007154,GO:0007163,GO:0007165,GO:0007264,GO:0007275,GO:0007507,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008284,GO:0008318,GO:0009414,GO:0009415,GO:0009555,GO:0009628,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009787,GO:0009788,GO:0009790,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010556,GO:0010558,GO:0010605,GO:0010646,GO:0010648,GO:0016740,GO:0016765,GO:0018342,GO:0018344,GO:0019222,GO:0019538,GO:0019725,GO:0022622,GO:0023051,GO:0023052,GO:0023057,GO:0030003,GO:0030010,GO:0032501,GO:0032502,GO:0032507,GO:0032991,GO:0033036,GO:0033993,GO:0034097,GO:0034613,GO:0035050,GO:0035295,GO:0035556,GO:0036211,GO:0042127,GO:0042221,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045185,GO:0045787,GO:0046872,GO:0046914,GO:0048229,GO:0048364,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051235,GO:0051641,GO:0051651,GO:0051716,GO:0051726,GO:0051769,GO:0051771,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060255,GO:0060429,GO:0065007,GO:0065008,GO:0070727,GO:0071704,GO:0072359,GO:0072503,GO:0072507,GO:0072657,GO:0072658,GO:0072659,GO:0072660,GO:0097305,GO:0097354,GO:0098771,GO:0099402,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990234,GO:1990778
EggNOG free text desc.Prenyltransferase
EggNOG OGsCOG5029@1,KOG0367@2759
EC2.5.1.59
COG Functional cat.O
BiGG ReactioniND750.YGL155W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01006
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.2988477-CDS-H-paniculata_contig77199:250..4661622930957.2988477-CDS-H-paniculata_contig77199:250..466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77199 251..466 +
1691481527.225966-CDS-H-paniculata_contig77199:250..4661691481527.225966-CDS-H-paniculata_contig77199:250..466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77199 251..466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig77199.15738.1prot_H-paniculata_contig77199.15738.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig77199 251..466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig77199.15738.1

>prot_H-paniculata_contig77199.15738.1 ID=prot_H-paniculata_contig77199.15738.1|Name=mRNA_H-paniculata_contig77199.15738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
QECGFQGRVNKAIDTCCSFWVGATLILLGEFHLVDTTRARPFHPSCQNRV
IGKWSCQPARCTAVRNIAPRPE
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mRNA from alignment at H-paniculata_contig77199:251..466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig77199.15738.1 ID=mRNA_H-paniculata_contig77199.15738.1|Name=mRNA_H-paniculata_contig77199.15738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig77199:251..466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGTGTGGTTTCCAAGGCCGCGTCAACAAGGCAATCGACACATGTTG
TTCGTTTTGGGTTGGCGCGACGTTGATTTTACTGGGAGAATTTCACCTGG
TGGATACAACGAGAGCCCGCCCGTTCCACCCCTCTTGCCAAAATAGGGTC
ATCGGTAAGTGGTCGTGCCAACCCGCTCGCTGCACCGCTGTACGCAATAT
CGCGCCACGCCCAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig77199:251..466+

>mRNA_H-paniculata_contig77199.15738.1 ID=mRNA_H-paniculata_contig77199.15738.1|Name=mRNA_H-paniculata_contig77199.15738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig77199:251..466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGTGTGGTTTCCAAGGCCGCGTCAACAAGGCAATCGACACATGTTG
TTCGTTTTGGGTTGGCGCGACGTTGATTTTACTGGGAGAATTTCACCTGG
TGGATACAACGAGAGCCCGCCCGTTCCACCCCTCTTGCCAAAATAGGGTC
ATCGGTAAGTGGTCGTGCCAACCCGCTCGCTGCACCGCTGTACGCAATAT
CGCGCCACGCCCAGAGCAGGAGTGTGGTTTCCAAGGCCGCGTCAACAAGG
CAATCGACACATGTTGTTCGTTTTGGGTTGGCGCGACGTTGATTTTACTG
GGAGAATTTCACCTGGTGGATACAACGAGAGCCCGCCCGTTCCACCCCTC
TTGCCAAAATAGGGTCATCGGTAAGTGGTCGTGCCAACCCGCTCGCTGCA
CCGCTGTACGCAATATCGCGCCACGCCCAGAG
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