mRNA_H-paniculata_contig77191.15737.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig77191.15737.1
Unique NamemRNA_H-paniculata_contig77191.15737.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig77191.15737.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA)

HSP 1 Score: 71.6 bits (174), Expect = 1.100e-12
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    1 EHWQRAGEVKMQGLVDNGAWTQVERPKNKLVVGTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPAPTAASTKMVL 255
            E W+ A +++++ +  NG W  ++RPK   VVG   +YK K+ E GKV+K+K RLV  G  Q  GI Y E  +P     + ++V+
Sbjct:  799 EKWRNAMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYGIDYTEVFAPVACMETVRLVI 883
[Close]
BLAST of mRNA_H-paniculata_contig77191.15737.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 68.9 bits (167), Expect = 1.160e-12
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:    4 HWQRAGEVKMQGLVDNGAWTQVERPKNKLVVGTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPAPTAASTKMVL 255
            HW+ A + + + L   G W  V  P+N+ V+G+  +YK K  +DGKV +YK RLVA G  Q  G+ Y E  SP     + ++VL
Sbjct:   64 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVL 147
[Close]
BLAST of mRNA_H-paniculata_contig77191.15737.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA)

HSP 1 Score: 69.3 bits (168), Expect = 7.170e-12
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:    4 HWQRAGEVKMQGLVDNGAWTQVERPKNKLVVGTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPAPTAASTKMVL 255
            HW+ A + + + L   G W  V  P+N+ V+G+  +YK K  +DGKV +YK RLVA G  Q  G+ Y+E  SP     + ++VL
Sbjct:  627 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVL 710
[Close]
BLAST of mRNA_H-paniculata_contig77191.15737.1 vs. uniprot
Match: A0A151TAZ4_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TAZ4_CAJCA)

HSP 1 Score: 66.6 bits (161), Expect = 2.650e-11
Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:    7 WQRAGEVKMQGLVDNGAWTQVERPKNKLVVGTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPAPTAASTKMVL 255
            W+ A + K+Q L DN  WT    P +   +G   +YK K   DG++E+YK RLV  GN Q++GI Y E  +P     + +++L
Sbjct:   28 WRSAMQEKIQALEDNQTWTICALPADNKALGCKWVYKIKYHSDGRIERYKARLVILGNHQVEGIDYTETFAPVAKMVTIRIIL 110
[Close]
BLAST of mRNA_H-paniculata_contig77191.15737.1 vs. uniprot
Match: A0A2C5X5E6_9PEZI (Copia protein n=1 Tax=Ceratocystis fimbriata CBS 114723 TaxID=1035309 RepID=A0A2C5X5E6_9PEZI)

HSP 1 Score: 64.7 bits (156), Expect = 3.080e-11
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    1 EHWQRAGEVKMQGLVDNGAWTQVERPKNKLVVGTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPAPTAASTKMVL 255
            E W+RA E ++  L + G W  V +P+  + + T  ++ +K   DGK+EKYK RLV  G RQ  G+++ E+ +P P +A+ ++ L
Sbjct:   22 EGWRRAIERELNTLTEFGTWRFVPKPEGCVPIDTRFVFAKKYDLDGKLEKYKARLVVRGFRQEYGVNFFESFAPTPGSATLRLFL 106
[Close]
BLAST of mRNA_H-paniculata_contig77191.15737.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 67.4 bits (163), Expect = 3.450e-11
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    1 EHWQRAGEVKMQGLVDNGAWTQVERPKNKLVVGTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPAPTAASTKMVL 255
            E W+ A   +M  L +N  W  V+ PK K VVG   I+  K+G DGK+++YK RLVA G  Q  GI Y+E  +P     S ++++
Sbjct:  862 EKWRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILI 946
[Close]
BLAST of mRNA_H-paniculata_contig77191.15737.1 vs. uniprot
Match: A0A5N5FXC4_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FXC4_9ROSA)

HSP 1 Score: 67.0 bits (162), Expect = 4.650e-11
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:    1 EHWQRAGEVKMQGLVDNGAWTQVERPKNKLVVGTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPAPTAASTKMVL 255
            E+W+ A + + + L   G W  V  P N+ V+G+  +YK K  +DGKV +YK RLVA G  Q  G+ Y+E  SP     + ++VL
Sbjct:  590 ENWRNAMKEEFEALQKQGTWELVPVPPNRNVIGSKWVYKIKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVL 674
[Close]
BLAST of mRNA_H-paniculata_contig77191.15737.1 vs. uniprot
Match: A0A2I0VGA3_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VGA3_9ASPA)

HSP 1 Score: 67.0 bits (162), Expect = 4.690e-11
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:    4 HWQRAGEVKMQGLVDNGAWTQVERPKNKLVVGTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPAPTAASTKMVL 255
            HWQ+A   + Q L   G W  V  P NK ++G    YK+K+  +GK+++YK RLVA G  Q  GI+Y E  SP     + +++L
Sbjct:  869 HWQKAMLDEFQALTKQGTWILVPHPPNKPILGCKWTYKKKVLPNGKLDRYKARLVALGYNQQLGINYTETFSPVAKMTTIRILL 952
[Close]
BLAST of mRNA_H-paniculata_contig77191.15737.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR)

HSP 1 Score: 62.0 bits (149), Expect = 5.380e-11
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   28 KMQGLVDNGAWTQVERPKNKLVVGTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSP 222
            ++  + +N  W  V+ P+  +++G  +++KRKIG DGKVE YK RLVA G RQ + + Y+E  SP
Sbjct:    4 EIDSMRENQVWDLVDLPEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEETFSP 68
[Close]
BLAST of mRNA_H-paniculata_contig77191.15737.1 vs. uniprot
Match: A0A2I0VDI3_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VDI3_9ASPA)

HSP 1 Score: 66.2 bits (160), Expect = 8.650e-11
Identity = 34/84 (40.48%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:    4 HWQRAGEVKMQGLVDNGAWTQVERPKNKLVVGTMMIYKRKIGEDGKVEKYKCRLVAHGNRQIKGIHYQEASSPAPTAASTKMVL 255
            HWQ+A   +   L   G WT V  P NK ++G    YK K   +GK+++YK RLVA G  Q  GI+Y E  SP     + ++VL
Sbjct:  315 HWQQAMSEEFDALTKQGTWTLVPPPPNKPILGCKWTYKTKTLPNGKIDRYKARLVALGYDQQLGINYTETFSPVAKMTTIRIVL 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77191.15737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T9B6_CAJCA1.100e-1237.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A540NMU0_MALBA1.160e-1239.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N5FUF0_9ROSA7.170e-1239.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151TAZ4_CAJCA2.650e-1137.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2C5X5E6_9PEZI3.080e-1136.47Copia protein n=1 Tax=Ceratocystis fimbriata CBS 1... [more]
A0A151T5R4_CAJCA3.450e-1140.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N5FXC4_9ROSA4.650e-1138.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0VGA3_9ASPA4.690e-1139.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0HGX5_PUNGR5.380e-1143.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0VDI3_9ASPA8.650e-1140.48Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig77191contigH-paniculata_contig77191:29..283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.0
Seed ortholog evalue4.2e-09
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size255
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.2381063-CDS-H-paniculata_contig77191:28..2531622930957.2381063-CDS-H-paniculata_contig77191:28..253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77191 29..253 -
1691481527.1958072-CDS-H-paniculata_contig77191:28..2531691481527.1958072-CDS-H-paniculata_contig77191:28..253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77191 29..253 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930957.2560844-UTR-H-paniculata_contig77191:253..2831622930957.2560844-UTR-H-paniculata_contig77191:253..283Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig77191 254..283 -
1691481527.2106044-UTR-H-paniculata_contig77191:253..2831691481527.2106044-UTR-H-paniculata_contig77191:253..283Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig77191 254..283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig77191.15737.1prot_H-paniculata_contig77191.15737.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig77191 29..253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig77191.15737.1

>prot_H-paniculata_contig77191.15737.1 ID=prot_H-paniculata_contig77191.15737.1|Name=mRNA_H-paniculata_contig77191.15737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MQGLVDNGAWTQVERPKNKLVVGTMMIYKRKIGEDGKVEKYKCRLVAHGN
RQIKGIHYQEASSPAPTAASTKMVL
back to top

mRNA from alignment at H-paniculata_contig77191:29..283-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig77191.15737.1 ID=mRNA_H-paniculata_contig77191.15737.1|Name=mRNA_H-paniculata_contig77191.15737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig77191:29..283- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACACTGGCAAAGAGCGGGAGAAGTCAAGATGCAAGGCCTAGTCGACAA
TGGGGCTTGGACGCAAGTGGAGCGCCCGAAGAACAAGCTGGTCGTGGGCA
CGATGATGATCTACAAAAGAAAAATCGGCGAGGACGGAAAAGTGGAGAAG
TATAAGTGCCGCCTGGTCGCCCACGGAAATCGTCAGATCAAGGGCATCCA
CTACCAGGAAGCTTCGTCCCCTGCACCCACAGCGGCCAGCACAAAGATGG
TGTTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig77191:29..283-

>mRNA_H-paniculata_contig77191.15737.1 ID=mRNA_H-paniculata_contig77191.15737.1|Name=mRNA_H-paniculata_contig77191.15737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig77191:29..283- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGGCCTAGTCGACAATGGGGCTTGGACGCAAGTGGAGCGCCCGAA
GAACAAGCTGGTCGTGGGCACGATGATGATCTACAAAAGAAAAATCGGCG
AGGACGGAAAAGTGGAGAAGTATAAGTGCCGCCTGGTCGCCCACGGAAAT
CGTCAGATCAAGGGCATCCACTACCAGGAAGCTTCGTCCCCTGCACCCAC
AGCGGCCAGCACAAAGATGGTGTTGATGCAAGGCCTAGTCGACAATGGGG
CTTGGACGCAAGTGGAGCGCCCGAAGAACAAGCTGGTCGTGGGCACGATG
ATGATCTACAAAAGAAAAATCGGCGAGGACGGAAAAGTGGAGAAGTATAA
GTGCCGCCTGGTCGCCCACGGAAATCGTCAGATCAAGGGCATCCACTACC
AGGAAGCTTCGTCCCCTGCACCCACAGCGGCCAGCACAAAGATGGTGTTG
back to top