mRNA_H-paniculata_contig7717.15735.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7717.15735.1
Unique NamemRNA_H-paniculata_contig7717.15735.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7717.15735.1 vs. uniprot
Match: D7FLM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM3_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 7.800e-87
Identity = 154/300 (51.33%), Postives = 195/300 (65.00%), Query Frame = 1 
Query:    1 MGGAERKCMMADDGHPQLAHAKRCVDGSPGPGAYGTGDAAVMGHRGGTFAAADERRGVEVALEVTVAQLKTLEWRIGYIRRGIRDPDNVRTGQGLVIKEQPGGELERLEAKALSLTRQVQILSAAAAAARLSRDPLPGACLVT--RMGVEESRGREYRSRRPATMSRGGESGQ--RRASVQLTDRFYDPLWSKASFLDSPGPGSYTVNDNEDALGRGSMWRSPSFGLMEPRAVGERALAARSLASLHLHTTKIGGEK-EGHAL-------APFHAYISELGPGEFTPDMCAPLLPDKSRR 864
            MG   RKCM     HPQL HAKR     PGPGAY TGD+AVMGH GGTFAAAD RR    ALE+ V +LKTLEWRI +IRRG R+P+ +R GQ LV++ Q G EL R+E KA  L  +++ L   AA+   +RDPLPGA +    R G  E        RRPAT +    +G+  R  + Q  DRFYDP+ S A+FL+SPGPG+Y++   E A GR S+ RSP+F LM+ R +G++A A RSLASLHLH+ + GG    G++        APFHAY+SE G G +TPDM AP LP+++RR
Sbjct:    1 MGCGARKCMTPGKDHPQLPHAKRRDGAGPGPGAYATGDSAVMGHHGGTFAAADNRRAATAALEMVVGRLKTLEWRIEFIRRGEREPEKLRPGQSLVVRTQSGQELMRMEEKASRLRSEIKRLGKLAASEASTRDPLPGASIGRGGRAGGNE--------RRPATTAADCSTGRDKRGPAGQGKDRFYDPISSTATFLESPGPGAYSLTSGEGAFGRASISRSPAFDLMQRRVIGDQAAAGRSLASLHLHSAENGGGSGSGNSRGGRDGLGAPFHAYLSETGTGHYTPDMSAPPLPNEARR 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7717.15735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLM3_ECTSI7.800e-8751.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7717contigH-paniculata_contig7717:1840..4635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_000600.1
Exons4
Model size864
Cds size864
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7717.15735.1prot_H-paniculata_contig7717.15735.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7717 1840..4635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930956.9334462-CDS-H-paniculata_contig7717:1839..21021622930956.9334462-CDS-H-paniculata_contig7717:1839..2102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7717 1840..2102 +
1691481527.0619006-CDS-H-paniculata_contig7717:1839..21021691481527.0619006-CDS-H-paniculata_contig7717:1839..2102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7717 1840..2102 +
1622930956.9528015-CDS-H-paniculata_contig7717:2537..28051622930956.9528015-CDS-H-paniculata_contig7717:2537..2805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7717 2538..2805 +
1691481527.0709853-CDS-H-paniculata_contig7717:2537..28051691481527.0709853-CDS-H-paniculata_contig7717:2537..2805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7717 2538..2805 +
1622930956.9694786-CDS-H-paniculata_contig7717:3181..33001622930956.9694786-CDS-H-paniculata_contig7717:3181..3300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7717 3182..3300 +
1691481527.0794687-CDS-H-paniculata_contig7717:3181..33001691481527.0794687-CDS-H-paniculata_contig7717:3181..3300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7717 3182..3300 +
1622930956.9914834-CDS-H-paniculata_contig7717:4421..46351622930956.9914834-CDS-H-paniculata_contig7717:4421..4635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7717 4422..4635 +
1691481527.0902977-CDS-H-paniculata_contig7717:4421..46351691481527.0902977-CDS-H-paniculata_contig7717:4421..4635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7717 4422..4635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7717.15735.1

>prot_H-paniculata_contig7717.15735.1 ID=prot_H-paniculata_contig7717.15735.1|Name=mRNA_H-paniculata_contig7717.15735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=288bp
MGGAERKCMMADDGHPQLAHAKRCVDGSPGPGAYGTGDAAVMGHRGGTFA
AADERRGVEVALEVTVAQLKTLEWRIGYIRRGIRDPDNVRTGQGLVIKEQ
PGGELERLEAKALSLTRQVQILSAAAAAARLSRDPLPGACLVTRMGVEES
RGREYRSRRPATMSRGGESGQRRASVQLTDRFYDPLWSKASFLDSPGPGS
YTVNDNEDALGRGSMWRSPSFGLMEPRAVGERALAARSLASLHLHTTKIG
GEKEGHALAPFHAYISELGPGEFTPDMCAPLLPDKSRR
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mRNA from alignment at H-paniculata_contig7717:1840..4635+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7717.15735.1 ID=mRNA_H-paniculata_contig7717.15735.1|Name=mRNA_H-paniculata_contig7717.15735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2796bp|location=Sequence derived from alignment at H-paniculata_contig7717:1840..4635+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGTGCTGAACGCAAGTGCATGATGGCAGACGACGGGCATCCCCA
ATTAGCACATGCAAAACGCTGCGTTGATGGAAGCCCCGGACCTGGTGCGT
ACGGAACCGGCGATGCCGCGGTAATGGGTCACCGTGGAGGAACGTTCGCG
GCCGCGGATGAGAGGAGGGGGGTTGAGGTGGCGCTTGAGGTGACGGTAGC
ACAACTGAAGACTTTGGAATGGAGAATTGGGTACATTCGGCGTGGGATTC
GAGATCCTGACAAGTGAGTTCCGCTTACATCTCATGACAGTAACGTGTAC
TCAAAATAACAAGGAGCAGCTCGCGGTGAAATCTTTGGGCTACCGTGGAA
TATGGACAGCATGTTCTATCGCAATTATGTTGTGTGATTGCCATTACTTG
CAGGTATTTAATACCACAATACAATTGATATATACAACCCAGCATGCGTA
ATGGCGTAGAACGGTTCAAAACGTCTTCGTTTAGGATATCGCTGAATGAC
ATTTTTCCTTTCTCCAAGTGTCGACTCTGTTGTCGAGAACGCGAAACTCA
TCAAATGTCCACGGTCCAGTTGGCTGCATATTCTTGATCGCTACCGCAAA
CCCGAAATTATCCGAGCCGCTCCCATCCAAATCATGCAAGCGAATCAACA
CCAACACAAAAGTTGTCAAGTTGACACACCACGTATTGTTCTCTTCAGCG
TCCGCACGGGGCAAGGTCTAGTGATCAAAGAACAGCCAGGAGGGGAGCTT
GAACGCCTTGAGGCGAAGGCATTAAGTCTTACACGCCAAGTCCAAATCCT
GTCGGCGGCCGCGGCGGCAGCACGCCTGTCACGCGACCCTCTTCCGGGAG
CTTGCCTCGTGACTCGGATGGGTGTGGAGGAGAGCAGAGGGCGAGAATAC
CGCTCGCGCAGACCCGCCACCATGTCCAGGGGTGGCGAAAGCGGACAACG
CCGAGCGTCTGTGCAGGTGAACTTAGACTGGTGGGTTATGAGGTACGAAT
GTGGCTTGCAGAACATTCCCCGAAGAAAGAAATTAGGAATCTAAGCAAAG
TGGAAAGCAAAGAATGAACTTGACGGATATCACGAACAATTTGCGCAGTA
TAAATATCTCGTCGAATTATCATCTCCTTTGAGGTAAATGTATCGGTATA
TTTCCGGAGCGAAATTATTGCGAAATAACCTGTTCTCGCCGAGCATTCAT
CTACAACCTTGCCTTCGATAAACTCTACTGCAACCGTCGTCACAGCCGTC
ATCTCTCTGTGGCTATGCTGTTGGACTCGAAAGTACACGGTTGGAACCAT
CACTCCTCCTACATCCGTTTTGTGCCCTTTCCTTTCCTTTAGCTCACAGA
TCGGTTCTACGATCCTCTTTGGAGCAAGGCGAGCTTTCTTGATTCTCCTG
GTCCGGGTTCGTACACGGTGAATGACAACGAGGATGCGTTGGGTCGAGGT
TCAATGTGGCGGTGAGCATTTTCGGCACGTCAGCACCACGACTTTTGTTC
CTTTCAACTGTGGAAATTGATTGACAGTATTTGTTTTTGACCCCGTTTCA
AAACAAACGCACTCTCCTGGCGCACCGCCGACAAATTGCACCTGAACTAA
GCGTCGACAGGGGAGTGCTAGCACCACATGGAATCCCAGGATACAGATGC
ATGTGGTAATACGATCACCTCCCGCGTTTCAATGATGAGCTACCGAGGGA
GGCGCTATTCAGGCAGTGCTACTGCAACCTCATACGTAGTGCGTTTTGTG
GACATAAGGCTCATTCCACAGTGTGGTTAGAAGCGCTAGTTACCAAGTTA
CGCCGCAGATTCCTGGAAGAAATCAGTAGCTTGAAAATATACGTTTCCTC
TCACACAGGAGTCAAATTAGTTCGAACCATGGGAGTTCGTGAAAAGCTGC
GGATATGCAAAAGTAGCCCAGCGGCAAAATTCGTCCTTGGGCATTTGGAC
TACTAGGCAGGTTGATACCAAGGACAGGATTTCTGGCAAGGACATCAAAA
GGCTACCTGTACACAGATGCGGGCGAGGGACCAATTAAATTCCAAACGTT
TCGCTACCAGAGGTTATCTAGAAACCTTGTCATGAATTGCAGATTACTCA
GTACCTTCTAAATTTTACGGTAGTAGAATTTGGGCGTGTTATCCGATATT
GTTTTCTCTTTCTTCCTTTTGTCTCTGCAGGGCCTACGTAGCAATTCACC
CAGGATTGGATGTCGATGGTGAAATTGATAGTAGGTGTAGAGCTATGTTC
CGGGGTTGATTCCGTCGACTACAGACATATGGCATTTCGAAGACGAGAAG
TGGACCTAAGTACCCTGGTCTACATACACTTGTGACGACGACTAGACCCC
ATTAAAGCAGATTGTCGAATTCCTAGTAGCTTGTGGCAACGACATATTGC
TCATTACCCACACTATTCAGGACTGCAGGTTATACTGAAATTACCTGATG
ATGCTGATTCCAGTTAATGTCCATCGAAGATATTGGCTTTTGCTACGTAG
TTAGGCCAAACCTCCTAACAGTATGTTTTTGCCTCGCCATCAGAAGCACT
GTGTTTCTTCTCATTCTTTCTTCCACCGTAAGGTCCCCTTCTTTTGGCCT
CATGGAGCCAAGGGCAGTCGGCGAGCGAGCTCTCGCTGCTCGCAGTCTTG
CCTCCCTCCACCTTCACACTACGAAAATCGGCGGAGAAAAGGAAGGCCAT
GCATTGGCGCCATTCCACGCGTACATATCGGAGTTGGGGCCTGGCGAGTT
CACCCCGGACATGTGCGCCCCGCTTCTCCCGGATAAGAGTCGACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig7717:1840..4635+

>mRNA_H-paniculata_contig7717.15735.1 ID=mRNA_H-paniculata_contig7717.15735.1|Name=mRNA_H-paniculata_contig7717.15735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1728bp|location=Sequence derived from alignment at H-paniculata_contig7717:1840..4635+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGTGCTGAACGCAAGTGCATGATGGCAGACGACGGGCATCCCCA
ATTAGCACATGCAAAACGCTGCGTTGATGGAAGCCCCGGACCTGGTGCGT
ACGGAACCGGCGATGCCGCGGTAATGGGTCACCGTGGAGGAACGTTCGCG
GCCGCGGATGAGAGGAGGGGGGTTGAGGTGGCGCTTGAGGTGACGGTAGC
ACAACTGAAGACTTTGGAATGGAGAATTGGGTACATTCGGCGTGGGATTC
GAGATCCTGACAAATGGGAGGTGCTGAACGCAAGTGCATGATGGCAGACG
ACGGGCATCCCCAATTAGCACATGCAAAACGCTGCGTTGATGGAAGCCCC
GGACCTGGTGCGTACGGAACCGGCGATGCCGCGGTAATGGGTCACCGTGG
AGGAACGTTCGCGGCCGCGGATGAGAGGAGGGGGGTTGAGGTGGCGCTTG
AGGTGACGGTAGCACAACTGAAGACTTTGGAATGGAGAATTGGGTACATT
CGGCGTGGGATTCGAGATCCTGACAACGTCCGCACGGGGCAAGGTCTAGT
GATCAAAGAACAGCCAGGAGGGGAGCTTGAACGCCTTGAGGCGAAGGCAT
TAAGTCTTACACGCCAAGTCCAAATCCTGTCGGCGGCCGCGGCGGCAGCA
CGCCTGTCACGCGACCCTCTTCCGGGAGCTTGCCTCGTGACTCGGATGGG
TGTGGAGGAGAGCAGAGGGCGAGAATACCGCTCGCGCAGACCCGCCACCA
TGTCCAGGGGTGGCGAAAGCGGACAACGCCGAGCGTCTGTGCAGCGTCCG
CACGGGGCAAGGTCTAGTGATCAAAGAACAGCCAGGAGGGGAGCTTGAAC
GCCTTGAGGCGAAGGCATTAAGTCTTACACGCCAAGTCCAAATCCTGTCG
GCGGCCGCGGCGGCAGCACGCCTGTCACGCGACCCTCTTCCGGGAGCTTG
CCTCGTGACTCGGATGGGTGTGGAGGAGAGCAGAGGGCGAGAATACCGCT
CGCGCAGACCCGCCACCATGTCCAGGGGTGGCGAAAGCGGACAACGCCGA
GCGTCTGTGCAGCTCACAGATCGGTTCTACGATCCTCTTTGGAGCAAGGC
GAGCTTTCTTGATTCTCCTGGTCCGGGTTCGTACACGGTGAATGACAACG
AGGATGCGTTGGGTCGAGGTTCAATGTGGCGCTCACAGATCGGTTCTACG
ATCCTCTTTGGAGCAAGGCGAGCTTTCTTGATTCTCCTGGTCCGGGTTCG
TACACGGTGAATGACAACGAGGATGCGTTGGGTCGAGGTTCAATGTGGCG
GTCCCCTTCTTTTGGCCTCATGGAGCCAAGGGCAGTCGGCGAGCGAGCTC
TCGCTGCTCGCAGTCTTGCCTCCCTCCACCTTCACACTACGAAAATCGGC
GGAGAAAAGGAAGGCCATGCATTGGCGCCATTCCACGCGTACATATCGGA
GTTGGGGCCTGGCGAGTTCACCCCGGACATGTGCGCCCCGCTTCTCCCGG
ATAAGAGTCGACGGGTCCCCTTCTTTTGGCCTCATGGAGCCAAGGGCAGT
CGGCGAGCGAGCTCTCGCTGCTCGCAGTCTTGCCTCCCTCCACCTTCACA
CTACGAAAATCGGCGGAGAAAAGGAAGGCCATGCATTGGCGCCATTCCAC
GCGTACATATCGGAGTTGGGGCCTGGCGAGTTCACCCCGGACATGTGCGC
CCCGCTTCTCCCGGATAAGAGTCGACGG
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