mRNA_H-paniculata_contig77094.15727.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig77094.15727.1
Unique NamemRNA_H-paniculata_contig77094.15727.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig77094.15727.1 vs. uniprot
Match: G0WGC4_NAUDC (Integrase catalytic domain-containing protein n=1 Tax=Naumovozyma dairenensis (strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 / NRRL Y-12639) TaxID=1071378 RepID=G0WGC4_NAUDC)

HSP 1 Score: 65.1 bits (157), Expect = 5.590e-10
Identity = 40/109 (36.70%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   10 VIDDRKTTDNPAVSRE---KEHWNSDTGATDHMTSDETAFEDYTPALPGTMSGWGRLVHLVSQSGGKSRIAMLNRVAYVPELRHNLISTRRATDTSGKSFIYSANKASL 327
             I D  TT++ A S       HW  DTG T HMT   +AF ++   + G++ G G  V +      K     LN V YVP+L  NLIS R+AT TS   F+++  K  +
Sbjct:  170 AISDSATTNSNATSSSALSSNHWIFDTGCTSHMTPHRSAFSEFHTDVSGSVKGAGGSVRIKGHGTVKLNGITLNDVLYVPDLPVNLISIRKATQTSKNKFVFTNEKVDV 278
[Close]
BLAST of mRNA_H-paniculata_contig77094.15727.1 vs. uniprot
Match: G0WG70_NAUDC (Peptidase A1 domain-containing protein n=1 Tax=Naumovozyma dairenensis (strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 / NRRL Y-12639) TaxID=1071378 RepID=G0WG70_NAUDC)

HSP 1 Score: 63.5 bits (153), Expect = 1.770e-9
Identity = 39/109 (35.78%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:   10 VIDDRKTTDNPAVSRE---KEHWNSDTGATDHMTSDETAFEDYTPALPGTMSGWGRLVHLVSQSGGKSRIAMLNRVAYVPELRHNLISTRRATDTSGKSFIYSANKASL 327
             I D  TT++ A S       HW  DTG T HMT   + F ++   + G++ G G  V +      K     LN V YVP+L  NLIS R+AT TS   F+++  K  +
Sbjct:  320 AISDSATTNSNATSSSALSSNHWIFDTGCTSHMTPHRSVFSEFHTDVSGSVKGAGGSVRIKGHGTVKLNGITLNDVLYVPDLPVNLISIRKATQTSKNQFVFTNEKVDV 428
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77094.15727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
G0WGC4_NAUDC5.590e-1036.70Integrase catalytic domain-containing protein n=1 ... [more]
G0WG70_NAUDC1.770e-935.78Peptidase A1 domain-containing protein n=1 Tax=Nau... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig77094contigH-paniculata_contig77094:171..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.9
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog27289.XP_003672078.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tkp5 protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,3S0WE@4893,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSaccharomycetaceae
Best eggNOG OGNA|NA|NA
Exons2
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.5915935-CDS-H-paniculata_contig77094:170..3431622930955.5915935-CDS-H-paniculata_contig77094:170..343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77094 171..343 -
1691481526.4560583-CDS-H-paniculata_contig77094:170..3431691481526.4560583-CDS-H-paniculata_contig77094:170..343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77094 171..343 -
1622930955.604464-CDS-H-paniculata_contig77094:376..5301622930955.604464-CDS-H-paniculata_contig77094:376..530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77094 377..530 -
1691481526.4679587-CDS-H-paniculata_contig77094:376..5301691481526.4679587-CDS-H-paniculata_contig77094:376..530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig77094 377..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig77094.15727.1prot_H-paniculata_contig77094.15727.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig77094 171..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig77094.15727.1

>prot_H-paniculata_contig77094.15727.1 ID=prot_H-paniculata_contig77094.15727.1|Name=mRNA_H-paniculata_contig77094.15727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MTAVIDDRKTTDNPAVSREKEHWNSDTGATDHMTSDETAFEDYTPALPGT
MSGWGRLVHLVSQSGGKSRIAMLNRVAYVPELRHNLISTRRATDTSGKSF
IYSANKASL
back to top

mRNA from alignment at H-paniculata_contig77094:171..530-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig77094.15727.1 ID=mRNA_H-paniculata_contig77094.15727.1|Name=mRNA_H-paniculata_contig77094.15727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig77094:171..530- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGCCGTAATTGACGATCGCAAAACAACAGACAACCCTGCCGTGTC
CAGAGAGAAGGAACACTGGAACTCAGACACCGGCGCGACAGACCACATGA
CGTCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTCCCGGGGACC
ATGTGTAAAATCGCCAACGGGACATTTGTGCTGGTAGCGGGGTGGGGACG
CCTTGTGCATCTAGTAAGTCAATCGGGTGGAAAATCCCGGATAGCAATGT
TAAACAGGGTTGCCTACGTACCCGAGCTCCGGCACAATTTAATCTCCACA
CGCCGAGCGACAGATACATCGGGTAAATCGTTCATATACAGTGCCAACAA
AGCAAGCCTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig77094:171..530-

>mRNA_H-paniculata_contig77094.15727.1 ID=mRNA_H-paniculata_contig77094.15727.1|Name=mRNA_H-paniculata_contig77094.15727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig77094:171..530- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGCCGTAATTGACGATCGCAAAACAACAGACAACCCTGCCGTGTC
CAGAGAGAAGGAACACTGGAACTCAGACACCGGCGCGACAGACCACATGA
CGTCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTCCCGGGGACC
ATGTATGACGGCCGTAATTGACGATCGCAAAACAACAGACAACCCTGCCG
TGTCCAGAGAGAAGGAACACTGGAACTCAGACACCGGCGCGACAGACCAC
ATGACGTCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTCCCGGG
GACCATGTCGGGGTGGGGACGCCTTGTGCATCTAGTAAGTCAATCGGGTG
GAAAATCCCGGATAGCAATGTTAAACAGGGTTGCCTACGTACCCGAGCTC
CGGCACAATTTAATCTCCACACGCCGAGCGACAGATACATCGGGTAAATC
GTTCATATACAGTGCCAACAAAGCAAGCCTCCGGGGTGGGGACGCCTTGT
GCATCTAGTAAGTCAATCGGGTGGAAAATCCCGGATAGCAATGTTAAACA
GGGTTGCCTACGTACCCGAGCTCCGGCACAATTTAATCTCCACACGCCGA
GCGACAGATACATCGGGTAAATCGTTCATATACAGTGCCAACAAAGCAAG
CCTC
back to top