mRNA_H-paniculata_contig7709.15726.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7709.15726.1
Unique NamemRNA_H-paniculata_contig7709.15726.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7709.15726.1 vs. uniprot
Match: A0A6H5K0Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 6.780e-11
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 QAVYISGLTTLMIYYVHYRLWAILGPIAVEATCIVYLTSYK 123
            QA+Y++GL TLMIYYVH+ LWA+  P+AVE +C++YLT+ K
Sbjct:   48 QAIYVTGLATLMIYYVHFGLWAVFFPVAVECSCLIYLTALK 88
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BLAST of mRNA_H-paniculata_contig7709.15726.1 vs. uniprot
Match: D8LCW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW9_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 9.600e-7
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 QAVYISGLTTLMIYYVHYRLWAILGPIAVEATCIVYLTSYKV 126
            QAVY  GL TLMIYY H+RLWA+  P+A E + ++YLT  K+
Sbjct:   44 QAVYTVGLLTLMIYYFHFRLWAVFYPMAFEFSSLMYLTGLKI 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7709.15726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0Z2_9PHAE6.780e-1160.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCW9_ECTSI9.600e-757.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7709contigH-paniculata_contig7709:10985..11119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.5344877-CDS-H-paniculata_contig7709:10984..111191622930955.5344877-CDS-H-paniculata_contig7709:10984..11119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7709 10985..11119 +
1691481526.4441996-CDS-H-paniculata_contig7709:10984..111191691481526.4441996-CDS-H-paniculata_contig7709:10984..11119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7709 10985..11119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7709.15726.1prot_H-paniculata_contig7709.15726.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7709 10985..11119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7709.15726.1

>prot_H-paniculata_contig7709.15726.1 ID=prot_H-paniculata_contig7709.15726.1|Name=mRNA_H-paniculata_contig7709.15726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
QAVYISGLTTLMIYYVHYRLWAILGPIAVEATCIVYLTSYKVSQ*
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mRNA from alignment at H-paniculata_contig7709:10985..11119+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7709.15726.1 ID=mRNA_H-paniculata_contig7709.15726.1|Name=mRNA_H-paniculata_contig7709.15726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig7709:10985..11119+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCAGTATATATTTCCGGTCTCACCACCCTCATGATATACTACGTGCA
CTACAGACTGTGGGCGATTCTCGGTCCAATAGCGGTCGAGGCCACCTGCA
TAGTTTACCTCACGAGTTACAAGGTCAGCCAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7709:10985..11119+

>mRNA_H-paniculata_contig7709.15726.1 ID=mRNA_H-paniculata_contig7709.15726.1|Name=mRNA_H-paniculata_contig7709.15726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig7709:10985..11119+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCAGTATATATTTCCGGTCTCACCACCCTCATGATATACTACGTGCA
CTACAGACTGTGGGCGATTCTCGGTCCAATAGCGGTCGAGGCCACCTGCA
TAGTTTACCTCACGAGTTACAAGGTCAGCCAGTAGCAGGCAGTATATATT
TCCGGTCTCACCACCCTCATGATATACTACGTGCACTACAGACTGTGGGC
GATTCTCGGTCCAATAGCGGTCGAGGCCACCTGCATAGTTTACCTCACGA
GTTACAAGGTCAGCCAGTAG
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