mRNA_H-paniculata_contig7642.15638.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7642.15638.1
Unique NamemRNA_H-paniculata_contig7642.15638.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7642.15638.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM)

HSP 1 Score: 186 bits (473), Expect = 1.240e-53
Identity = 109/283 (38.52%), Postives = 160/283 (56.54%), Query Frame = 1
Query:  139 FRVKDLGSLSRVLGIEVRRDRPNGTITISQGSYIRKVLKRYGFDECQGVPTPVEGTVKISAPESADKPSEPKSETSTEYRGMVGSLMYASTGTRSDIAYAVHQAVRRME---------------------DPWFFYLG-------------WAEDVEDRKSTTGYVFKLNGGAISWRSRKQQLVTWSSTEVEYVAAGEAGKETVYLRDLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTYCRTKHIGVRWHGIREGVREGVLALNYVQTGDQLADNITKGLSR 885
            F +K+LG L   LGIE+ R+R + TI ++Q +YI+++ +++G ++C+ V TP +   K+  P S D+   P+      YR +VG+LMY +T TR DIA AV +  +  E                     D    + G             WA D++ R+STTGYVF LNG AISW+S++Q  V  SSTE EY+A   A +E V+LR LL  +G  C G+TT F+DN+  I L+K    + RTKHI +++H +RE V + V+ L Y  T + +AD  TK L+R
Sbjct:   21 FSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKP-SEDEDFVPR----YPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGELIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 298          
BLAST of mRNA_H-paniculata_contig7642.15638.1 vs. uniprot
Match: A0A2P4YHT5_9STRA (RxLR effector candidate protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHT5_9STRA)

HSP 1 Score: 184 bits (467), Expect = 2.360e-52
Identity = 106/264 (40.15%), Postives = 160/264 (60.61%), Query Frame = 1
Query:  139 FRVKDLGSLSRVLGIEVRRDRPNGTITISQGSYIRKVLKRYGFDECQGVPTPVEGTVKISAPESADKPSEPKSETST-EYRGMVGSLMYASTGTRSDIAYA-VHQAVRRMEDPWFFYLG-------------WAEDVEDRKSTTGYVFKLNGGAISWRSRKQQLVTWSSTEVEYVAAGEAGKETVYLRDLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTYCRTKHIGVRWHGIREGVREGVLALNYVQTGDQLADNITKGLSR 885
            F +K+LG L   LGIE+ R R    I ++Q +YI+++ +++G D+C+ V TP + + K+       KPSE +   +   YR +VG+LMY +T TR DIAYA V + ++  +D    + G             WA D++ R+STTGYVF LNG AISW+S++Q  V  SSTE EY+A   A +E V+LR LL  +G+  +G+TT+++DN+  I L+K    + RTKHI +++H +RE V    + L Y  T + +AD  TK L+R
Sbjct:   76 FSIKELGDLKYCLGIEIHRKRE--MIVMNQRAYIKRLAEKFGVDKCKDVYTPADSSAKLM------KPSEDEYFVAKYPYRELVGALMYLATSTRPDIAYARVLKYLKTTQDVGLVFNGGIKGELVGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLREKVESKTVELEYKPTDEMIADGFTKVLAR 331          
BLAST of mRNA_H-paniculata_contig7642.15638.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 183 bits (465), Expect = 2.210e-51
Identity = 107/283 (37.81%), Postives = 160/283 (56.54%), Query Frame = 1
Query:  139 FRVKDLGSLSRVLGIEVRRDRPNGTITISQGSYIRKVLKRYGFDECQGVPTPVEGTVKISAPESADKPSEPKSETSTEYRGMVGSLMYASTGTRSDIAYAVHQAVRRME---------------------DPWFFYLG-------------WAEDVEDRKSTTGYVFKLNGGAISWRSRKQQLVTWSSTEVEYVAAGEAGKETVYLRDLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTYCRTKHIGVRWHGIREGVREGVLALNYVQTGDQLADNITKGLSR 885
            F +K+LG L   LGIE+ R+R + TI ++Q +YI+++ +++G ++C+ V TP +   K+  P + D+   P+      YR +VG+LMY +T TR DIA AV +  +  E                     D    + G             WA D++ R+STTGYVF LNG AISW+S++Q  V  SSTE EY+A   A +E V+LR LL  +G  C  +TT+F+DN+  I L+K    + RTKHI +++H +RE V + V+ L Y  T + +AD  TK L+R
Sbjct:  117 FSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKP-AEDEVFVPR----YPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGELIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 394          
BLAST of mRNA_H-paniculata_contig7642.15638.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 179 bits (455), Expect = 5.390e-51
Identity = 107/295 (36.27%), Postives = 158/295 (53.56%), Query Frame = 1
Query:  136 RFRVKDLGSLSRVLGIEVRRDRPNGTITISQGSYIRKVLKRYGFDECQGVPTPVEGTVKISAPESADKPSEPKSETSTEYRGMVGSLMYASTGTRSDIAYAVHQAVRRMEDP----W-------------------------------FFYLGWAEDVEDRKSTTGYVFKLNGGAISWRSRKQQLVTWSSTEVEYVAAGEAGKETVYLRDLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTYCRTKHIGVRWHGIREGVREGVLALNYVQTGDQLADNITKGLSRVQSQRLRNLL 915
            +F+V D+G +  VLG+ +RRDR  G +TISQ +Y++ +LKR+G ++C+ V TP+E           + P +     + EY+ ++G L Y +T TR D+A AV    + M  P    W                               +    WA D++ R+ST+GYVF++NG  +SW S++Q  VT S+TE EYVA   A +E V+LR LL  IG      + + EDN+ AI LSK    + RTKHI V +H +RE V +  + +NY  T   LAD +TK L R   Q+ R++L
Sbjct:   12 KFKVDDMGEVKHVLGMVIRRDRRKGKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQ-----ELPDDENPTNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301          
BLAST of mRNA_H-paniculata_contig7642.15638.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 191 bits (484), Expect = 5.630e-51
Identity = 114/291 (39.18%), Postives = 155/291 (53.26%), Query Frame = 1
Query:  139 FRVKDLGSLSRVLGIEVRRDRPNGTITISQGSYIRKVLKRYGFDECQGVPTPV---EGTVKISAPESADKPSEPKSETSTEYRGMVGSLMYASTGTRSDIAYAV------------------------------HQAVRRMEDPW----FFYLGWAEDVEDRKSTTGYVFKLNGGAISWRSRKQQLVTWSSTEVEYVAAGEAGKETVYLRDLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTYCRTKHIGVRWHGIREGVREGVLALNYVQTGDQLADNITKGLSRVQSQR 900
            F + DLG +  VLG+EV RDR   TI +SQ  Y+ ++L+R G+ + + + TP    E   K+ APE  D            Y+  +GSLMYA  GTR D+AY V                              +Q V   + PW    +    WA DV DR+S +GY F L GGA+SW S+KQ     SSTE EY+AA  A KE  +LR  LG IG  C+ +T L  DN+SA+ +++    + RTKHI VR+H +RE V  G + L YV TGDQ+AD +TKGL + +  +
Sbjct:  847 FNMSDLGEVHWVLGLEVIRDRNARTIALSQRRYVEEILERAGYSDARPIATPALANEHMAKVDAPE-VDV---------LTYQSGIGSLMYAMLGTRPDLAYTVGVLSQHTAKPGEAHQRALVRAFKYLRGTADYQLVFDGKKPWELTGYVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127          
BLAST of mRNA_H-paniculata_contig7642.15638.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM)

HSP 1 Score: 180 bits (456), Expect = 7.270e-51
Identity = 112/291 (38.49%), Postives = 150/291 (51.55%), Query Frame = 1
Query:  139 FRVKDLGSLSRVLGIEVRRDRPNGTITISQGSYIRKVLKRYGFDECQGVPTPV---EGTVKISAPESADKPSEPKSETSTEYRGMVGSLMYASTGTRSDIAYAV------------------------------HQAVRRMEDPW----FFYLGWAEDVEDRKSTTGYVFKLNGGAISWRSRKQQLVTWSSTEVEYVAAGEAGKETVYLRDLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTYCRTKHIGVRWHGIREGVREGVLALNYVQTGDQLADNITKGLSRVQSQR 900
            F + DLG +  VLG+EV  DR   TIT+SQ  Y+ ++LK  G+ +   + TPV   E   K+ APE  D            Y+  +GSLMYA  GTR D+AY V                              +Q V   + PW    +    WA DV DR+S +GY F L GGAISW S+KQ     SSTE EY+ A  A KE  +LR  L  IG  C+ +T L  DN+SA+ ++     + RTKHI +R+H +RE V  G + L YV TGDQ+AD + KGL + +  +
Sbjct:   41 FNMSDLGEVHWVLGLEVIHDRNARTITLSQCRYVEEILKCAGYSDACPIATPVLANEHMAKVDAPE-VDV---------LTYQSGIGSLMYAMLGTRPDLAYTVGVLSQHTAKPGEAHQHALVHAFKYLRGTADYQLVFDGKKPWELTGYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGLVKAKHNK 321          
BLAST of mRNA_H-paniculata_contig7642.15638.1 vs. uniprot
Match: A0A401H2X4_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H2X4_9APHY)

HSP 1 Score: 179 bits (454), Expect = 8.470e-51
Identity = 110/294 (37.41%), Postives = 153/294 (52.04%), Query Frame = 1
Query:  136 RFRVKDLGSLSRVLGIEVRRDRPNGTITISQGSYIRKVLKRYGFDECQGVPTPV---EGTVKISAPESADKPSEPKSETSTEYRGMVGSLMYASTGTRSDIAYAV---------------------HQAVRRMEDPWFFYLG---------------WAEDVEDRKSTTGYVFKLNGGAISWRSRKQQLVTWSSTEVEYVAAGEAGKETVYLRDLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTYCRTKHIGVRWHGIREGVREGVLALNYVQTGDQLADNITKGLSRVQSQR 900
            RF + DLG    +LG+E+ RDRP   + +SQ  Y+ K L +YG  +C+ V TP+   +  VK+S  E   KP          Y+  +GSLMYA  GT  D+A+ V                     ++ +R   D    Y G               WA ++ DR+S TG+VF ++ GA+SW S++Q     SSTE EY+A     KE V+LR  L  IG   +G T L  DN+SAI LSK +  + RTKHI VR+H IRE    G +   YV TG+Q+AD +TKGL R + ++
Sbjct:   21 RFEMTDLGEARWLLGMEITRDRPRRVLELSQHQYVEKCLAQYGMADCRPVSTPMAQNQKLVKLSEAEIDPKP----------YQSALGSLMYAMIGTHPDLAFTVSALSQHAATPGKEHWIALMRVYRYLRGTADKKLVYCGTTKEKEPLLGYVDADWAANINDRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAHGTKEAVWLRTFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLPREKHEK 304          
BLAST of mRNA_H-paniculata_contig7642.15638.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 178 bits (452), Expect = 7.290e-50
Identity = 107/291 (36.77%), Postives = 155/291 (53.26%), Query Frame = 1
Query:  136 RFRVKDLGSLSRVLGIEVRRDRPNGTITISQGSYIRKVLKRYGFDECQGVPTPVEGTVKISAPESADKPSEPKSETSTEYRGMVGSLMYASTGTRSDIAYAVHQAVRRMEDPWFFYL----------------------------------GWAEDVEDRKSTTGYVFKLNGGAISWRSRKQQLVTWSSTEVEYVAAGEAGKETVYLRDLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTYCRTKHIGVRWHGIREGVREGVLALNYVQTGDQLADNITKGLSRVQSQRLR 906
            R+++KDLG LS +LGI V +D+    I + Q  YI  +LK+YG D+   V TP + +VK+   +    P +P +     Y+ MVGSL+YA+  TR DIA AV    +   +P   +L                                   WA D++DR STTG +F L+GGA+SW S+KQ  V  S+ E EYVA  +A +E  +LR LL  +G   +  T + EDN+ AI ++K    + RTKHI +R+H IRE V++G + L Y  T    AD +TK L+R + +  R
Sbjct:   77 RYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPST-----YQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGNKDLIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFR 361          
BLAST of mRNA_H-paniculata_contig7642.15638.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 179 bits (453), Expect = 7.460e-50
Identity = 106/294 (36.05%), Postives = 164/294 (55.78%), Query Frame = 1
Query:  136 RFRVKDLGSLSRVLGIEVRRDRPNGTITISQGSYIRKVLKRYGFDECQGVPTPVEGTVK-ISAPESADKPSEPKSETSTEYRGMVGSLMYASTGTRSDIAYAVHQAVRRM----EDPW------FFYL------------------------GWAEDVEDRKSTTGYVFKLNGGAISWRSRKQQLVTWSSTEVEYVAAGEAGKETVYLRDLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTYCRTKHIGVRWHGIREGVREGVLALNYVQTGDQLADNITKGLSRVQSQRLRNL 912
            RF+VKD+G L  +LG++V ++  +G + I Q +Y   ++K+YG + C+ V TPV+ + K +SA E ++  ++       EY+  VGSL+Y S+ TR DI +AV+   +       + W      F YL                         WA D+ DRKST+GY F++NG A+SWRS+KQ  V  S+ E EYVA   A +E +++R LL  +        T++EDN+SAI +SK    + R+KHI +++H +R+ V +  L + Y  TG  LAD  TKG+ + Q ++LR L
Sbjct:   91 RFQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNK------EEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376          
BLAST of mRNA_H-paniculata_contig7642.15638.1 vs. uniprot
Match: A0A090BBM5_HYAAE (RxLR effector candidate protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090BBM5_HYAAE)

HSP 1 Score: 176 bits (445), Expect = 1.850e-49
Identity = 104/283 (36.75%), Postives = 151/283 (53.36%), Query Frame = 1
Query:  139 FRVKDLGSLSRVLGIEVRRDRPNGTITISQGSYIRKVLKRYGFDECQGVPTPVEGTVKISAPESADKPSEPKSETSTEYRGMVGSLMYASTGTRSDIAYAVHQAVRRME----DPW------------------------------FFYLGWAEDVEDRKSTTGYVFKLNGGAISWRSRKQQLVTWSSTEVEYVAAGEAGKETVYLRDLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTYCRTKHIGVRWHGIREGVREGVLALNYVQTGDQLADNITKGLSR 885
            F +KDLG L   LGIE+ R R    I ++Q +YI+++ +++G D C+ V TP +   K+     A  P E        YR +VG+LMY +T TR DIA+AV +  +  E      W                              F    WA D++ R+STTGYVF LNG AISW S++Q  V  SSTE EY++   A +E ++LR LL  + +    +TT+F+DN+  I L+K    + RTKHI +++H +RE V   V+AL +  T + +AD  TK LS+
Sbjct:   21 FSIKDLGDLKYCLGIEIHRKRDERIIKMNQRAYIKRLAEKFGVDNCKDVHTPADSNAKL-----AKMPDEEVFVPKFPYRELVGALMYITTCTRPDIAHAVGEVAKYCERYNKSHWTAAKRIIKYLKTTQDMSIVFSGFNKGELLRFADANWAGDLDTRRSTTGYVFFLNGSAISWNSKRQSTVATSSTEAEYMSLYSATQEAIWLRCLLKDLQYCAEVATTIFQDNQGCIALAKNPVYHSRTKHIDIKFHFLREKVASEVIALEFKPTEEMIADGFTKALSK 298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7642.15638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3GB69_PHYRM1.240e-5338.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P4YHT5_9STRA2.360e-5240.15RxLR effector candidate protein n=1 Tax=Phytophtho... [more]
H3GB17_PHYRM2.210e-5137.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9D5L2_PARCT5.390e-5136.27Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A4Y9ZY34_9AGAM5.630e-5139.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y9ZSL8_9AGAM7.270e-5138.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H2X4_9APHY8.470e-5137.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0S7JP25_9TELE7.290e-5036.77POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A7D9M6E1_PARCT7.460e-5036.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A090BBM5_HYAAE1.850e-4936.75RxLR effector candidate protein n=1 Tax=Hyaloperon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7642contigH-paniculata_contig7642:580..1884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.6
Seed ortholog evalue8.9e-42
Seed eggNOG ortholog164328.Phyra87566
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3Q8Z1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons4
Model size921
Cds size897
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7642.15638.1prot_H-paniculata_contig7642.15638.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7642 604..1884 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.2151923-UTR-H-paniculata_contig7642:579..6031622930944.2151923-UTR-H-paniculata_contig7642:579..603Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7642 580..603 +
1691481521.7316208-UTR-H-paniculata_contig7642:579..6031691481521.7316208-UTR-H-paniculata_contig7642:579..603Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7642 580..603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.2332714-CDS-H-paniculata_contig7642:603..7141622930944.2332714-CDS-H-paniculata_contig7642:603..714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7642 604..714 +
1691481521.7413602-CDS-H-paniculata_contig7642:603..7141691481521.7413602-CDS-H-paniculata_contig7642:603..714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7642 604..714 +
1622930944.2520022-CDS-H-paniculata_contig7642:938..11561622930944.2520022-CDS-H-paniculata_contig7642:938..1156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7642 939..1156 +
1691481521.7525415-CDS-H-paniculata_contig7642:938..11561691481521.7525415-CDS-H-paniculata_contig7642:938..1156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7642 939..1156 +
1622930944.277184-CDS-H-paniculata_contig7642:1216..13351622930944.277184-CDS-H-paniculata_contig7642:1216..1335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7642 1217..1335 +
1691481521.7616673-CDS-H-paniculata_contig7642:1216..13351691481521.7616673-CDS-H-paniculata_contig7642:1216..1335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7642 1217..1335 +
1622930944.322032-CDS-H-paniculata_contig7642:1435..18841622930944.322032-CDS-H-paniculata_contig7642:1435..1884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7642 1436..1884 +
1691481521.7720518-CDS-H-paniculata_contig7642:1435..18841691481521.7720518-CDS-H-paniculata_contig7642:1435..1884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7642 1436..1884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7642.15638.1

>prot_H-paniculata_contig7642.15638.1 ID=prot_H-paniculata_contig7642.15638.1|Name=mRNA_H-paniculata_contig7642.15638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=299bp
MGVAAVYLNASVEEEFFLKQSPSFPLSPVTYRLCAACRFRVKDLGSLSRV
LGIEVRRDRPNGTITISQGSYIRKVLKRYGFDECQGVPTPVEGTVKISAP
ESADKPSEPKSETSTEYRGMVGSLMYASTGTRSDIAYAVHQAVRRMEDPW
FFYLGWAEDVEDRKSTTGYVFKLNGGAISWRSRKQQLVTWSSTEVEYVAA
GEAGKETVYLRDLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTYCRTKHI
GVRWHGIREGVREGVLALNYVQTGDQLADNITKGLSRVQSQRLRNLLM*
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mRNA from alignment at H-paniculata_contig7642:580..1884+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7642.15638.1 ID=mRNA_H-paniculata_contig7642.15638.1|Name=mRNA_H-paniculata_contig7642.15638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1305bp|location=Sequence derived from alignment at H-paniculata_contig7642:580..1884+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACATGATTTTGAATTAGAAGGCATGGGCGTAGCTGCGGTGTATTTGAA CGCCTCGGTGGAAGAGGAGTTTTTTCTTAAGCAATCCCCGAGTTTTCCCC TATCTCCCGTGACATACCGTTTGTGCGCCGCCTGCGTAAAAGCCTGTACG GCCTCAAGCAGAGCGGCCATAACTAGAATAACACTCTTGACGATTTTCTT GCTGGGGTAGGACTCGACCGTTTCATTACCGACTCATGCTTGTACTTATC CCGCGATGATGGGGGAGAGACAAACCTTCTGGTGGCCGTGTATGTTGACG ACCTGGTCATCGCTGGCCGCCGTGAGAAAGTAAACAAGTTCGAGCATAAC ATAAGTCAGCGTTTTAGGGTGAAAGACTTGGGTTCTCTCTCGCGCGTGTT GGGAATAGAAGTACGACGTGACCGCCCTAATGGCACCATAACCATCTCGC AGGGTAGCTACATCCGCAAGGTACTAAAACGATACGGTTTTGACGAGTGT CAAGGGGTACCCACCCCTGTGGAGGGAACCGTGAAGATTTCGGCACCCGA GTCGGCCGACAAGCCCTCCGAACCGAAGTCACTTGGAGTTATACTGTCGG ACATAGGCGCAGGAGTACAAGAAATCAGCAGAGGAAGAAGTGAAACTTCA ACTGAGTACAGAGGTATGGTAGGATCACTCATGTACGCCTCGACAGGAAC TAGATCTGATATAGCATACGCGGTACACCAAGCAGTACGTCGTATGGAGG ACCCATGTCGGGAAGACTTCAGTACATGCAAGCGCATTTTTCGTTATCAA AGTACTGTGCCTGATCTCGGCATTACATTCGGCGGTAAGTGGTCGCGGTC TGGGAGGGTTCTTTTATCTGGGTTGGGCGGAAGATGTCGAGGACCGAAAG TCCACGACAGGATACGTATTCAAACTAAACGGTGGTGCGATAAGTTGGCG CTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGAGGTAGAGTACG TTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAGGGACTTACTA GGATCGATAGGTTTCGGATGCAGGGGAAGCACGACATTGTTTGAGGACAA TAAATCAGCTATTAATCTCAGTAAGGGATCTGGCACATACTGTAGGACAA AGCACATCGGAGTGCGCTGGCACGGAATTCGAGAGGGAGTTCGGGAAGGA GTATTGGCGTTGAACTACGTGCAAACCGGCGACCAACTTGCTGACAATAT AACGAAAGGACTAAGCAGAGTACAGTCTCAGAGACTGAGAAATTTACTCA TGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7642:580..1884+

>mRNA_H-paniculata_contig7642.15638.1 ID=mRNA_H-paniculata_contig7642.15638.1|Name=mRNA_H-paniculata_contig7642.15638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1794bp|location=Sequence derived from alignment at H-paniculata_contig7642:580..1884+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGTAGCTGCGGTGTATTTGAACGCCTCGGTGGAAGAGGAGTTTTT
TCTTAAGCAATCCCCGAGTTTTCCCCTATCTCCCGTGACATACCGTTTGT
GCGCCGCCTGCATGGGCGTAGCTGCGGTGTATTTGAACGCCTCGGTGGAA
GAGGAGTTTTTTCTTAAGCAATCCCCGAGTTTTCCCCTATCTCCCGTGAC
ATACCGTTTGTGCGCCGCCTGCCGTTTTAGGGTGAAAGACTTGGGTTCTC
TCTCGCGCGTGTTGGGAATAGAAGTACGACGTGACCGCCCTAATGGCACC
ATAACCATCTCGCAGGGTAGCTACATCCGCAAGGTACTAAAACGATACGG
TTTTGACGAGTGTCAAGGGGTACCCACCCCTGTGGAGGGAACCGTGAAGA
TTTCGGCACCCGAGTCGGCCGACAAGCCCTCCGAACCGAACGTTTTAGGG
TGAAAGACTTGGGTTCTCTCTCGCGCGTGTTGGGAATAGAAGTACGACGT
GACCGCCCTAATGGCACCATAACCATCTCGCAGGGTAGCTACATCCGCAA
GGTACTAAAACGATACGGTTTTGACGAGTGTCAAGGGGTACCCACCCCTG
TGGAGGGAACCGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCTCC
GAACCGAAAAGTGAAACTTCAACTGAGTACAGAGGTATGGTAGGATCACT
CATGTACGCCTCGACAGGAACTAGATCTGATATAGCATACGCGGTACACC
AAGCAGTACGTCGTATGGAGGACCCATAAGTGAAACTTCAACTGAGTACA
GAGGTATGGTAGGATCACTCATGTACGCCTCGACAGGAACTAGATCTGAT
ATAGCATACGCGGTACACCAAGCAGTACGTCGTATGGAGGACCCATGGTT
CTTTTATCTGGGTTGGGCGGAAGATGTCGAGGACCGAAAGTCCACGACAG
GATACGTATTCAAACTAAACGGTGGTGCGATAAGTTGGCGCTCTAGGAAG
CAACAGTTAGTCACGTGGTCCAGTACAGAGGTAGAGTACGTTGCTGCAGG
AGAAGCGGGAAAGGAGACGGTATATCTTAGGGACTTACTAGGATCGATAG
GTTTCGGATGCAGGGGAAGCACGACATTGTTTGAGGACAATAAATCAGCT
ATTAATCTCAGTAAGGGATCTGGCACATACTGTAGGACAAAGCACATCGG
AGTGCGCTGGCACGGAATTCGAGAGGGAGTTCGGGAAGGAGTATTGGCGT
TGAACTACGTGCAAACCGGCGACCAACTTGCTGACAATATAACGAAAGGA
CTAAGCAGAGTACAGTCTCAGAGACTGAGAAATTTACTCATGTGAGGTTC
TTTTATCTGGGTTGGGCGGAAGATGTCGAGGACCGAAAGTCCACGACAGG
ATACGTATTCAAACTAAACGGTGGTGCGATAAGTTGGCGCTCTAGGAAGC
AACAGTTAGTCACGTGGTCCAGTACAGAGGTAGAGTACGTTGCTGCAGGA
GAAGCGGGAAAGGAGACGGTATATCTTAGGGACTTACTAGGATCGATAGG
TTTCGGATGCAGGGGAAGCACGACATTGTTTGAGGACAATAAATCAGCTA
TTAATCTCAGTAAGGGATCTGGCACATACTGTAGGACAAAGCACATCGGA
GTGCGCTGGCACGGAATTCGAGAGGGAGTTCGGGAAGGAGTATTGGCGTT
GAACTACGTGCAAACCGGCGACCAACTTGCTGACAATATAACGAAAGGAC
TAAGCAGAGTACAGTCTCAGAGACTGAGAAATTTACTCATGTGA
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