mRNA_H-paniculata_contig763.15623.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig763.15623.1
Unique NamemRNA_H-paniculata_contig763.15623.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig763.15623.1 vs. uniprot
Match: D7G6Z9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z9_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 8.720e-22
Identity = 67/173 (38.73%), Postives = 94/173 (54.34%), Query Frame = 1 
Query:   43 MLPMLSAVDGLPQIQASPAHDAEKASVDAITARNRLP----ILKYDDPVLAQPHPGFNMGLGHDSLPQYIALYSLNDERRQQKPPLAAGRFVGSGITGPPGMQ--CKRPHGHSKDETSAILKAIIPNKEWKTKEGNWVQTVSKKLGTDGDIG*AELTVHLFLCAFMENISLAC 543
            M+P  SA+  LP    + A  AE A+    ++ + +     ILKY+DPVLA+P   F+M +GHDSLPQYI+LY+ +DERR   P  A  R  G G   P   +   +RP G   D+ +A+LKAI+PNKE+    G WVQTVS  + + G++   +  V   L          C
Sbjct:   19 MIPEPSALGDLPLGALTEAVSAESAAGPTCSSADEVDDDFSILKYEDPVLARPDIAFDMRMGHDSLPQYISLYA-SDERR---PDEATQRLAGVGAAAPGSTRNTTRRPRGGG-DDITAVLKAILPNKEYADAAGEWVQTVSGTVRSRGELEKVQNKVEARLATLQARPGAVC 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig763.15623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6Z9_ECTSI8.720e-2238.73Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig763contigH-paniculata_contig763:16056..18101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog2880.D7G6Z9
KEGG koko:K10410
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG4001@1,KOG4001@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons2
Model size873
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig763.15623.1prot_H-paniculata_contig763.15623.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig763 16098..17711 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.102304-UTR-H-paniculata_contig763:16055..160971622930942.102304-UTR-H-paniculata_contig763:16055..16097Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig763 16056..16097 +
1691481520.8036828-UTR-H-paniculata_contig763:16055..160971691481520.8036828-UTR-H-paniculata_contig763:16055..16097Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig763 16056..16097 +
1622930942.1443374-UTR-H-paniculata_contig763:17711..181011622930942.1443374-UTR-H-paniculata_contig763:17711..18101Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig763 17712..18101 +
1691481520.8292713-UTR-H-paniculata_contig763:17711..181011691481520.8292713-UTR-H-paniculata_contig763:17711..18101Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig763 17712..18101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.1159632-CDS-H-paniculata_contig763:16097..161361622930942.1159632-CDS-H-paniculata_contig763:16097..16136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig763 16098..16136 +
1691481520.8135793-CDS-H-paniculata_contig763:16097..161361691481520.8135793-CDS-H-paniculata_contig763:16097..16136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig763 16098..16136 +
1622930942.1305609-CDS-H-paniculata_contig763:17309..177111622930942.1305609-CDS-H-paniculata_contig763:17309..17711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig763 17310..17711 +
1691481520.82118-CDS-H-paniculata_contig763:17309..177111691481520.82118-CDS-H-paniculata_contig763:17309..17711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig763 17310..17711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig763.15623.1

>prot_H-paniculata_contig763.15623.1 ID=prot_H-paniculata_contig763.15623.1|Name=mRNA_H-paniculata_contig763.15623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MLPMLSAVDGLPQIQASPAHDAEKASVDAITARNRLPILKYDDPVLAQPH
PGFNMGLGHDSLPQYIALYSLNDERRQQKPPLAAGRFVGSGITGPPGMQC
KRPHGHSKDETSAILKAIIPNKEWKTKEGNWVQTVSKKLGTDGDIG*
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mRNA from alignment at H-paniculata_contig763:16056..18101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig763.15623.1 ID=mRNA_H-paniculata_contig763.15623.1|Name=mRNA_H-paniculata_contig763.15623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2046bp|location=Sequence derived from alignment at H-paniculata_contig763:16056..18101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCGGGGTTAAGAGGCAGAGAGCAAGTTTAAGCAGGGTAAAATGCTCCC
TATGCTTTCCGCCGTAGATGGCCTACCTCAGGTGGGTACTCTAGGCAGTC
GCTATTTGCTATTAATTTCGCAAATAGCGCCACATAGGGAGGTTCTCGAG
CGGAGGAACTAGTACACAAGCACCAGCCCATAGAACATTTTACTAGATAC
CACTGAGTTAGAAACGCTTCGGATTGTGCACATAAAGCATTGCGCCTCGC
AAAGACGTTGTAATAGACTGATTATCGTCCAGCAGGTTTTTGTGTGGTTC
ATATTACACCGTAAACCATGGCTTCTGTTGCAGATATAGCGTTGGTACTG
CAATGCTGTACGGATTGTTGCAAGGGTGGTAGCAGCTGACGAGAGGTACA
CCCCTCGCGCAAACGCGCGCTCCAGTGATGGATTCCTCCTGATCGATTAT
TATCTTCGACGGCGAACAAAAAGCGGAAGGTACAAAGATCGACATATCTG
GGTACGGATTGAAGACTACGCCCTGTTATTTAGTCTCTAGACAATGAGGG
AGAAAAAGTTGGGGAAGAAAAACCTCTGTGCCGCAAGGGGAGAGCATCAC
CTGCAGCAAGCAACATTAAAGTATTCTAGATGAACTGTCGTCATCGATTA
AGCCTCAGTTGTTATTGCTATAGTCACAGTAGAGTATGGGCCCGATGATA
AGAAACTACAGTATTATTTTTGGTGAGGCCCAAAACTTATTTTGAGAATC
ACGAGCAGTAATATTTGCCACTTTATATAGAAATTAGAATAAGGCCACAA
TTTGAGCCCCATTTCTTTGGCCGGATTTCTTACGGGTTGGCAAGAAGTGA
GCCTCAGTTTCTTACAGCTTCATTTCTTAGGATCGGACCGTTACTGTATG
CATGTACTCCTTTCTCTACTCTACTCTATTCTGCTCTACTCTCAATTGTA
TGATGAAAGTATTGCGCTTATTTGCATGACAGCAGGGATGGTCCTATTGT
ATGTCAGTTTCCTTGGCAATTTAATGCGCTATAATAGTATTGATTTGTTA
TTTGTCTGTACCATTTCTGTGTAGTTATACGATTTTACTGTAGCCCTGGA
GAAGCCTGGATGTGTTTGGTTTATTTTGAAATGCGGATCTACCACCCAAA
CAGGTACCGCGTACAGCTCGCCATTGTTATGGTATCTTGTATGTACAGAC
TGTACTGTAAATAGTATGTACTCCCCTTCCTTTTTCGTGTTTTTTCCCAC
AAAGATACAGGCATCGCCCGCTCACGATGCAGAGAAGGCTTCTGTTGATG
CGATCACGGCGAGAAATCGTCTCCCAATTCTCAAGTACGATGACCCAGTG
CTGGCTCAACCTCACCCAGGATTCAACATGGGATTGGGTCATGACTCCCT
TCCACAATACATCGCACTCTACTCGTTAAACGACGAGCGTCGCCAGCAGA
AGCCCCCGCTTGCGGCAGGACGCTTCGTAGGGAGTGGCATTACTGGCCCT
CCAGGGATGCAGTGCAAAAGGCCTCATGGGCATTCGAAGGATGAAACTTC
GGCCATTCTAAAAGCTATCATTCCCAACAAGGAGTGGAAAACCAAGGAGG
GGAATTGGGTGCAAACAGTAAGCAAGAAACTAGGAACAGACGGCGACATC
GGGTAGGCAGAGTTGACCGTGCACCTGTTTTTGTGTGCATTTATGGAAAA
TATATCTCTTGCCTGCTGCGGGAATATAGAGGCGCTTCCAAAAGTGTCAA
TACATCAGCGTGCAGTGGTGGCGCGTTGACCACGAAAAAAAAACGGTTAT
GGCTGTTGTACTTTTATATAGATCCGGCCCCTACTTGTCTGTGCACGTTC
TTTTGGGTCCTCCCGTTGCCAACCTGCACATATTGATATATCCTCGAGGC
AAATGACGAGTGCTTCTGTAAGATGTGGCGCCGTTTGTAGCACGATTTGA
CTTTTGAGGAAGTAAGATGTTTGCTCATCATTGATGAGAACATTGATCAA
CCAATGGCGCCGATGGAGAGCCGTACGCATACCGCTCTACAGGTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig763:16056..18101+

>mRNA_H-paniculata_contig763.15623.1 ID=mRNA_H-paniculata_contig763.15623.1|Name=mRNA_H-paniculata_contig763.15623.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig763:16056..18101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCCTATGCTTTCCGCCGTAGATGGCCTACCTCAGATGCTCCCTAT
GCTTTCCGCCGTAGATGGCCTACCTCAGATACAGGCATCGCCCGCTCACG
ATGCAGAGAAGGCTTCTGTTGATGCGATCACGGCGAGAAATCGTCTCCCA
ATTCTCAAGTACGATGACCCAGTGCTGGCTCAACCTCACCCAGGATTCAA
CATGGGATTGGGTCATGACTCCCTTCCACAATACATCGCACTCTACTCGT
TAAACGACGAGCGTCGCCAGCAGAAGCCCCCGCTTGCGGCAGGACGCTTC
GTAGGGAGTGGCATTACTGGCCCTCCAGGGATGCAGTGCAAAAGGCCTCA
TGGGCATTCGAAGGATGAAACTTCGGCCATTCTAAAAGCTATCATTCCCA
ACAAGGAGTGGAAAACCAAGGAGGGGAATTGGGTGCAAACAGTAAGCAAG
AAACTAGGAACAGACGGCGACATCGGGTAGATACAGGCATCGCCCGCTCA
CGATGCAGAGAAGGCTTCTGTTGATGCGATCACGGCGAGAAATCGTCTCC
CAATTCTCAAGTACGATGACCCAGTGCTGGCTCAACCTCACCCAGGATTC
AACATGGGATTGGGTCATGACTCCCTTCCACAATACATCGCACTCTACTC
GTTAAACGACGAGCGTCGCCAGCAGAAGCCCCCGCTTGCGGCAGGACGCT
TCGTAGGGAGTGGCATTACTGGCCCTCCAGGGATGCAGTGCAAAAGGCCT
CATGGGCATTCGAAGGATGAAACTTCGGCCATTCTAAAAGCTATCATTCC
CAACAAGGAGTGGAAAACCAAGGAGGGGAATTGGGTGCAAACAGTAAGCA
AGAAACTAGGAACAGACGGCGACATCGGGTAG
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