mRNA_H-paniculata_contig76169.15610.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76169.15610.1
Unique NamemRNA_H-paniculata_contig76169.15610.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig76169.15610.1 vs. uniprot
Match: D8LTM6_ECTSI (Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM6_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 6.550e-18
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 EEFHRQGDLEASTGVPISPLCGWEGRNPAKSQCDFIDFVVRPCAV 138
            EEFHRQGDLEA  GVP+SPLC  EG N AKSQCDF++FVVRPCA 
Sbjct:  552 EEFHRQGDLEAEKGVPVSPLCSREGHNQAKSQCDFVNFVVRPCAT 596
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BLAST of mRNA_H-paniculata_contig76169.15610.1 vs. uniprot
Match: A0A7S3XSI7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSI7_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 1.070e-12
Identity = 33/46 (71.74%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    4 EEFHRQGDLEASTGVPISPLCGWE-GRNPAKSQCDFIDFVVRPCAV 138
            EEF RQGD E   GVPISPLC    G N AKSQCDF+DFVVRPC V
Sbjct:  275 EEFWRQGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPCLV 320
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BLAST of mRNA_H-paniculata_contig76169.15610.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.230e-12
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    4 EEFHRQGDLEASTGVPISPLCGWEGRNPAKSQCDFIDFVVRPCAV 138
            EEF +QGDLE   G+ ISPLC     N AKSQCDFIDF+VRPC  
Sbjct: 1754 EEFFKQGDLERGQGLQISPLCDRAQGNLAKSQCDFIDFIVRPCVT 1798
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BLAST of mRNA_H-paniculata_contig76169.15610.1 vs. uniprot
Match: D7G4U4_ECTSI (Phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U4_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.120e-11
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 EEFHRQGDLEASTGVPISPLCGWEGRNPAKSQCDFIDFVVRPCAV 138
            EEF +QGD EA+ G+ +SPLC    +N  KSQCDFIDF+VRPC  
Sbjct:  676 EEFFKQGDKEAARGLAVSPLCDRRDQNLPKSQCDFIDFIVRPCVT 720
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BLAST of mRNA_H-paniculata_contig76169.15610.1 vs. uniprot
Match: A0A7E4VQG2_PANRE (PDEase domain-containing protein n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4VQG2_PANRE)

HSP 1 Score: 60.5 bits (145), Expect = 4.120e-10
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 LEEFHRQGDLEASTGVPISPLCGWEGRNPAKSQCDFIDFVVRPCAV 138
            LEEF RQGDLEAS G+P SPLC     + A+SQ  FIDF+V P  V
Sbjct:   64 LEEFFRQGDLEASMGLPYSPLCDRHTVHVAESQIGFIDFIVEPTMV 109
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BLAST of mRNA_H-paniculata_contig76169.15610.1 vs. uniprot
Match: A0A2G9TT39_TELCI (3'5'-cyclic nucleotide phosphodiesterase (Fragment) n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9TT39_TELCI)

HSP 1 Score: 59.7 bits (143), Expect = 4.330e-10
Identity = 28/46 (60.87%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 LEEFHRQGDLEASTGVPISPLCGWEGRNPAKSQCDFIDFVVRPCAV 138
            LEEF RQGDLEAS G+P SPLC     + A SQ  FIDF+V P  V
Sbjct:   34 LEEFFRQGDLEASMGLPYSPLCDRHTVHVADSQIGFIDFIVEPTMV 79
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BLAST of mRNA_H-paniculata_contig76169.15610.1 vs. uniprot
Match: A0A0R3QGT8_9BILA (PDEase domain-containing protein n=2 Tax=Brugia timori TaxID=42155 RepID=A0A0R3QGT8_9BILA)

HSP 1 Score: 59.3 bits (142), Expect = 1.130e-9
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 LEEFHRQGDLEASTGVPISPLCGWEGRNPAKSQCDFIDFVVRPCAV 138
            LEEF RQGDLEAS G+P SPLC     + A SQ  FIDF+V P  +
Sbjct:   63 LEEFFRQGDLEASMGLPYSPLCDRNTVHVADSQIGFIDFIVEPTMI 108
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BLAST of mRNA_H-paniculata_contig76169.15610.1 vs. uniprot
Match: A0A6V7TMV6_9BILA (Phosphodiesterase n=2 Tax=Meloidogyne TaxID=189290 RepID=A0A6V7TMV6_9BILA)

HSP 1 Score: 61.2 bits (147), Expect = 1.220e-9
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 LEEFHRQGDLEASTGVPISPLCGWEGRNPAKSQCDFIDFVVRPCAV 138
            LEEF RQGDLEAS G+P SPLC     + A+SQ  FIDF+V P  V
Sbjct:  368 LEEFFRQGDLEASMGLPYSPLCDRHTTHVAESQIGFIDFIVEPTMV 413
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BLAST of mRNA_H-paniculata_contig76169.15610.1 vs. uniprot
Match: A0A6V7W380_9BILA (Phosphodiesterase n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7W380_9BILA)

HSP 1 Score: 61.2 bits (147), Expect = 1.220e-9
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 LEEFHRQGDLEASTGVPISPLCGWEGRNPAKSQCDFIDFVVRPCAV 138
            LEEF RQGDLEAS G+P SPLC     + A+SQ  FIDF+V P  V
Sbjct:  676 LEEFFRQGDLEASMGLPYSPLCDRHTTHVAESQIGFIDFIVEPTMV 721
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BLAST of mRNA_H-paniculata_contig76169.15610.1 vs. uniprot
Match: A0A183GLA2_HELPZ (PDEase domain-containing protein n=2 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183GLA2_HELPZ)

HSP 1 Score: 60.5 bits (145), Expect = 1.580e-9
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 LEEFHRQGDLEASTGVPISPLCGWEGRNPAKSQCDFIDFVVRPCAV 138
            LEEF RQGDLEAS G+P SPLC     + A+SQ  FIDF+V P  V
Sbjct:  105 LEEFFRQGDLEASMGLPYSPLCDRHTVHVAESQIGFIDFIVEPTMV 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76169.15610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTM6_ECTSI6.550e-1877.78Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S3XSI7_HETAK1.070e-1271.74Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835Z5P1_9STRA8.230e-1264.44Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
D7G4U4_ECTSI1.120e-1160.00Phosphodiesterase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7E4VQG2_PANRE4.120e-1060.87PDEase domain-containing protein n=1 Tax=Panagrell... [more]
A0A2G9TT39_TELCI4.330e-1060.873'5'-cyclic nucleotide phosphodiesterase (Fragment... [more]
A0A0R3QGT8_9BILA1.130e-958.70PDEase domain-containing protein n=2 Tax=Brugia ti... [more]
A0A6V7TMV6_9BILA1.220e-960.87Phosphodiesterase n=2 Tax=Meloidogyne TaxID=189290... [more]
A0A6V7W380_9BILA1.220e-960.87Phosphodiesterase n=1 Tax=Meloidogyne enterolobii ... [more]
A0A183GLA2_HELPZ1.580e-960.87PDEase domain-containing protein n=2 Tax=Heligmoso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76169contigH-paniculata_contig76169:335..487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue5.1e-14
Seed eggNOG ortholog2880.D8LTM6
Preferred namepde-3
KEGG rclassRC00296
KEGG koko:K13293,ko:K13755,ko:K18437,ko:K19021
KEGG ReactionR00191,R01234
KEGG Pathwayko00230,ko04020,ko04022,ko04024,ko04740,ko04742,ko04924,ko04927,ko04934,ko05032,map00230,map04020,map04022,map04024,map04740,map04742,map04924,map04927,map04934,map05032
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000302,GO:0006935,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0007602,GO:0007610,GO:0007635,GO:0008150,GO:0008340,GO:0009268,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009636,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010259,GO:0010446,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010752,GO:0010754,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0032501,GO:0032502,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0046677,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:1901700,GO:1902531,GO:1902532
EggNOG free text desc.calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3688@1,KOG3688@2759
EC3.1.4.17,3.1.4.53
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.702124-CDS-H-paniculata_contig76169:334..4871622930940.702124-CDS-H-paniculata_contig76169:334..487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76169 335..487 -
1691481520.2534852-CDS-H-paniculata_contig76169:334..4871691481520.2534852-CDS-H-paniculata_contig76169:334..487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76169 335..487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76169.15610.1prot_H-paniculata_contig76169.15610.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76169 335..487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76169.15610.1

>prot_H-paniculata_contig76169.15610.1 ID=prot_H-paniculata_contig76169.15610.1|Name=mRNA_H-paniculata_contig76169.15610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
LEEFHRQGDLEASTGVPISPLCGWEGRNPAKSQCDFIDFVVRPCAVSKYE
*
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mRNA from alignment at H-paniculata_contig76169:335..487-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76169.15610.1 ID=mRNA_H-paniculata_contig76169.15610.1|Name=mRNA_H-paniculata_contig76169.15610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig76169:335..487- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGAGGAGTTCCACCGACAAGGCGATTTGGAGGCGTCGACGGGAGTGCC
AATATCCCCTCTGTGCGGGTGGGAGGGACGCAATCCTGCAAAAAGTCAAT
GTGATTTCATTGACTTCGTCGTGCGACCGTGCGCGGTGAGCAAGTATGAA
TAA
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Coding sequence (CDS) from alignment at H-paniculata_contig76169:335..487-

>mRNA_H-paniculata_contig76169.15610.1 ID=mRNA_H-paniculata_contig76169.15610.1|Name=mRNA_H-paniculata_contig76169.15610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig76169:335..487- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGAGGAGTTCCACCGACAAGGCGATTTGGAGGCGTCGACGGGAGTGCC
AATATCCCCTCTGTGCGGGTGGGAGGGACGCAATCCTGCAAAAAGTCAAT
GTGATTTCATTGACTTCGTCGTGCGACCGTGCGCGGTGAGCAAGTATGAA
TAACTAGAGGAGTTCCACCGACAAGGCGATTTGGAGGCGTCGACGGGAGT
GCCAATATCCCCTCTGTGCGGGTGGGAGGGACGCAATCCTGCAAAAAGTC
AATGTGATTTCATTGACTTCGTCGTGCGACCGTGCGCGGTGAGCAAGTAT
GAATAA
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