mRNA_H-paniculata_contig7599.15590.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7599.15590.1
Unique NamemRNA_H-paniculata_contig7599.15590.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7599.15590.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 3.550e-42
Identity = 89/166 (53.61%), Postives = 107/166 (64.46%), Query Frame = 1 
Query:    1 AVLASLDVNEQDAVKALKPWLDCLGKWARLKAPSR---EELWPIMTQPASVVLSKTSDDDESDIDTNNKTQPTPRSSSSTLPLPAHRALLPTLFRLMLLGGAEDVQDSPHRQPAPAAWLAARAYLLMLSLPGAGAYGVLQPAAVGLVLTNLRSWCRNSSVHRGAGG 489
            A LA LD+N+ DA+KAL PW+ CL  W+R    ++   E  W  +TQP + VLS+     E           TP     T PL AH+AL   LFR+MLLG  E+ + SPHR P+PAAW AARAYLLMLSLPGA  YGVLQ A +G+VLTNLRSWCRNS V+R  GG
Sbjct:   38 AALALLDINDDDAIKALGPWIKCLEAWSRKTNAAQGGEEGPWTTVTQPCTAVLSRADPSSE-----------TPXXXXGTPPLAAHKALTVILFRVMLLG--EETEGSPHRNPSPAAWAAARAYLLMLSLPGAAPYGVLQSAVLGMVLTNLRSWCRNSGVYRPGGG 190
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BLAST of mRNA_H-paniculata_contig7599.15590.1 vs. uniprot
Match: A0A6H5JQJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ4_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.890e-21
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:  280 MLLGGAEDVQDSPHRQPAPAAWLAARAYLLMLSLPGAGAYGVLQPAAVGLVLTNLRSWCRNSSVHRGAGG 489
            MLLG  ++ + SPHR P+PAAW AARAYLLMLSLPGA  YGVLQ A +G+VLTNLRSWCRNS V+R  GG
Sbjct:    1 MLLG--KETEGSPHRNPSPAAWAAARAYLLMLSLPGAAPYGVLQSAVLGMVLTNLRSWCRNSGVYRPGGG 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7599.15590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP86_ECTSI3.550e-4253.61Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JQJ4_9PHAE1.890e-2171.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7599contigH-paniculata_contig7599:2595..5544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue8.2e-38
Seed eggNOG ortholog2880.D7FP86
KEGG koko:K11491
Hectar predicted targeting categoryother localisation
EggNOG free text desc.meiotic chromosome condensation
EggNOG OGsKOG0413@1,KOG0413@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size553
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.098733-CDS-H-paniculata_contig7599:2594..26391622930936.098733-CDS-H-paniculata_contig7599:2594..2639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7599 2595..2639 +
1691481518.0937328-CDS-H-paniculata_contig7599:2594..26391691481518.0937328-CDS-H-paniculata_contig7599:2594..2639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7599 2595..2639 +
1622930936.1140347-CDS-H-paniculata_contig7599:5036..55431622930936.1140347-CDS-H-paniculata_contig7599:5036..5543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7599 5037..5543 +
1691481518.1061342-CDS-H-paniculata_contig7599:5036..55431691481518.1061342-CDS-H-paniculata_contig7599:5036..5543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7599 5037..5543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7599.15590.1prot_H-paniculata_contig7599.15590.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7599 2595..5543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7599.15590.1

>prot_H-paniculata_contig7599.15590.1 ID=prot_H-paniculata_contig7599.15590.1|Name=mRNA_H-paniculata_contig7599.15590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
AVLASLDVNEQDAVKALKPWLDCLGKWARLKAPSREELWPIMTQPASVVL
SKTSDDDESDIDTNNKTQPTPRSSSSTLPLPAHRALLPTLFRLMLLGGAE
DVQDSPHRQPAPAAWLAARAYLLMLSLPGAGAYGVLQPAAVGLVLTNLRS
WCRNSSVHRGAGGSNGGGGGGGGLMAAAKGSQKR
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mRNA from alignment at H-paniculata_contig7599:2595..5544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7599.15590.1 ID=mRNA_H-paniculata_contig7599.15590.1|Name=mRNA_H-paniculata_contig7599.15590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2950bp|location=Sequence derived from alignment at H-paniculata_contig7599:2595..5544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGTACTTGCGTCGCTAGATGTCAACGAGCAAGATGCTGTGAAGGTGGG
TGTACTTGTCCAGCGTTGTTTTTGTTGGCGTTCGAATTAGCTAGAGAAAG
CGACCGGGGATGGAGGGGGTTTTAAACCACCCTGATCACTCCAAACCAGT
GCAACATGCAGGGAGAGAGAGAACTTGACAACCATAAATCGATATTGGCG
TGCACGTGCTTGTTGTTCGCTAGTGGCACCTTTCTTGTTTCGTCATCTCG
GAAACTAACGGCCTTGGACTCACTTACACTCGTGACATTTGTGACTTTAC
GAATAGCTACCGTTTGAAAATCTTGAAATTTGTGCAGTGGCCAGGAAAAG
GTATACCCGTCCTTGGTTCTTGTAGACCATGCAAAGGCAACGGGCAGGAC
AGCTACTTCTTTGCTCCCGTGCGCTCTGCCAATATATACATACATTTTGC
CAAGGTAATTTACGTCAGACGAACGCTCCACCAACGCACACTAGGATTGA
CGGGTTTGACTTTGGTAGGCCTTCGACTCGGTGGTTTTGGGGATGTTGCA
CGCACACACACCGCCAATACAGCTAGGCCAAATGGGACTAGTCTAGTAGG
TGGATGTTCTTGGTTCTCAGTGGAACGCAAGATAGAACTGTCTGTGCCGG
GATTATTCCAAAGCTCCCCTTTCAAAGCACAAGAGAACATTCCAGGTTTG
GTCAGGAAAGGTACAGAGTCGGCCGAAGCAAGTGACACCCCCAGGCAACA
TAAAGGAGGAACCAGTCTGTTCGAAAAAGAAAGACTGTACCCTCAGCACT
CATGGCCAATCCAAGCGAATTTGGCTGCGTGGTAGAAGCACCCATTACAA
AGCGAGCGAGTACGTGGCGATTACGGCTTCTTTCTGCGGGGATGGGATGG
TCCAACAGGAACTTCATGGACCTCCCTGATTGAGAACAGGGTATTCAGAG
ATCGTCAAGCGTACGTTACCAGGGGGACACCGCAGTGGCACTGCGCAGTG
TCTTCAAATGTCCAGAAATTGCTAAGGTATACCTTAAATTGGCTATTGAC
CTTCAAATTTTGCACCCTTCCGAACCAACGCGAATAATCGGAGTTCTTGT
GACGAACATGTAAAAGTATTTGCCTTCAGCATGAGCACGTTTATTCTATG
CCCCCCCCGACTATCTATGACTGCTCCGAAAAATAGATAGGAGGACGAAT
AAATGAGGGGGAACACTTTTCCTGTTTGCCCGCACACCTTATTTCTTTGT
TTTCGTTTTGAAGACTTGGGGGGAAAAAATGAAACCGCGCTCTATGTTAC
AACCTGCTACCATTTTATGTGCCAGTTTTTTTAGGTCTTTGAACAGCAAT
TTTGAAGGGTACTGATTGCCCTTACGCGTCTTCGAAGCTTCAAAGCGAAT
TCAAATGTAACTGTGCACTACGTTGCGCGGGTTTAAAATAGGTTGTACAA
AACAAGGGGAAGCGGGACAGTCTCGCTCCTCCCAGGCGGATTAAAAATAA
AGCCTCTTCTGATGCAAGTAGACCTGAACTTCAACCTTGGATCCGACAAG
AGTACAGCAGTACTTCCCCTCGGCTTCGCCCATACAGTTCGAATTTTGTC
CTGATACCCATTTGGCCATTATCCACAACGCAAGTCCCACGCACAACGAG
TTATCTGCAATCTCAGGTGGGCGTAGTGTCCATGAAGATCGACTGTATAT
CGTATTTGGATTACTGGACCACAGAGTTGAAAGGTGTTCCGAAATAACAC
CGATTCACCATGTTTTACCATGTATACATTGCACAGGCAATACAGTATAG
TTGTATTAGGGACACGGTCACTACTAGATCTGTACACACACCGTATCAGT
AAGTCGGGCGTCTATAATAGATTCAAATCTAGTTCACTATGCTGTACAAC
TAACACCGCCTGCATCATGTATAGTCGCGTTACTCATGCCAAGGAGATGT
CGAGCCACAATTTGACACCCAGTCCTCACCTATCGAACACTGGTCTTTTG
TACGTGTTGCCGGTGCATAGACTGCAAGAAATTTTCGCTTGTATCCTCCA
TGTACCATAGCTCACGAACAGCGTACATGTTATGTGCAACAACCCGGGCA
ACACTTGTATTTTTCGGCTCGATTTTCGTGGAAACTGCTTGATACTACTA
AAATAGGACTGGGAAAAACACCAGACGATTCTTGTCGTGTTCAAGATATC
GTCCAGATCTATCGGTATAGACTTGCTTTTCAACAGCGCAGAGCGAAGCC
TCGTCTGTGAATCCAATCGGATAGAGAAATAATCGTCACACGGGACGCTA
TACCGTTTTTACCCTTACGATATCTGGCACCACTGTATCCTGTGAAAGAC
CTACACGCCCACGTAACCCCGTCTCCCTCTCTCTGGTCTTGTTCCTCTCC
GTCTCCTCCCTCTTCGCCCCTTCCCCCCCCCCCAAAAAAAAGGCTTTGAA
ACCATGGCTCGATTGCCTCGGCAAATGGGCGCGGCTAAAGGCGCCAAGTC
GTGAAGAGCTCTGGCCGATCATGACCCAACCAGCGTCGGTTGTTCTATCC
AAAACGTCCGATGATGATGAATCTGACATCGATACTAACAACAAAACCCA
ACCAACACCTCGGTCGTCGTCGTCTACACTGCCGCTGCCCGCGCACCGCG
CGCTGCTGCCGACCCTTTTCCGATTGATGCTTCTCGGTGGAGCTGAAGAT
GTGCAGGACTCCCCGCACCGCCAGCCCGCACCCGCCGCGTGGCTCGCCGC
GCGTGCTTACCTCCTCATGCTATCGCTTCCGGGCGCCGGGGCCTACGGTG
TCTTGCAACCCGCCGCCGTCGGTCTCGTGCTGACCAACCTTCGATCTTGG
TGTCGCAACTCGAGTGTGCACCGGGGGGCCGGAGGCAGCAATGGCGGCGG
AGGAGGAGGTGGAGGACTGATGGCGGCGGCGAAGGGCTCGCAGAAGCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig7599:2595..5544+

>mRNA_H-paniculata_contig7599.15590.1 ID=mRNA_H-paniculata_contig7599.15590.1|Name=mRNA_H-paniculata_contig7599.15590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig7599:2595..5544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGTACTTGCGTCGCTAGATGTCAACGAGCAAGATGCTGTGAAGGCTGT
ACTTGCGTCGCTAGATGTCAACGAGCAAGATGCTGTGAAGGCTTTGAAAC
CATGGCTCGATTGCCTCGGCAAATGGGCGCGGCTAAAGGCGCCAAGTCGT
GAAGAGCTCTGGCCGATCATGACCCAACCAGCGTCGGTTGTTCTATCCAA
AACGTCCGATGATGATGAATCTGACATCGATACTAACAACAAAACCCAAC
CAACACCTCGGTCGTCGTCGTCTACACTGCCGCTGCCCGCGCACCGCGCG
CTGCTGCCGACCCTTTTCCGATTGATGCTTCTCGGTGGAGCTGAAGATGT
GCAGGACTCCCCGCACCGCCAGCCCGCACCCGCCGCGTGGCTCGCCGCGC
GTGCTTACCTCCTCATGCTATCGCTTCCGGGCGCCGGGGCCTACGGTGTC
TTGCAACCCGCCGCCGTCGGTCTCGTGCTGACCAACCTTCGATCTTGGTG
TCGCAACTCGAGTGTGCACCGGGGGGCCGGAGGCAGCAATGGCGGCGGAG
GAGGAGGTGGAGGACTGATGGCGGCGGCGAAGGGCTCGCAGAAGCGGGCT
TTGAAACCATGGCTCGATTGCCTCGGCAAATGGGCGCGGCTAAAGGCGCC
AAGTCGTGAAGAGCTCTGGCCGATCATGACCCAACCAGCGTCGGTTGTTC
TATCCAAAACGTCCGATGATGATGAATCTGACATCGATACTAACAACAAA
ACCCAACCAACACCTCGGTCGTCGTCGTCTACACTGCCGCTGCCCGCGCA
CCGCGCGCTGCTGCCGACCCTTTTCCGATTGATGCTTCTCGGTGGAGCTG
AAGATGTGCAGGACTCCCCGCACCGCCAGCCCGCACCCGCCGCGTGGCTC
GCCGCGCGTGCTTACCTCCTCATGCTATCGCTTCCGGGCGCCGGGGCCTA
CGGTGTCTTGCAACCCGCCGCCGTCGGTCTCGTGCTGACCAACCTTCGAT
CTTGGTGTCGCAACTCGAGTGTGCACCGGGGGGCCGGAGGCAGCAATGGC
GGCGGAGGAGGAGGTGGAGGACTGATGGCGGCGGCGAAGGGCTCGCAGAA
GCGG
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