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Homology
BLAST of mRNA_H-paniculata_contig7594.15584.1 vs. uniprot
Match: D8LKX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX3_ECTSI) HSP 1 Score: 162 bits (411), Expect = 5.090e-42 Identity = 108/227 (47.58%), Postives = 139/227 (61.23%), Query Frame = 1
Query: 271 VHLHRIDLRVEAKVLGGMALGLGSAMAFGAIMGAAVVSFSADEGCRIPLLATVYISAPLSIGDFIAALTFTCLRAQLLRLDSEHFRQHQKRNRP---------DAWESSGDDQFGRVYDVFIFLALAFSVLEMLMFHLGRRRLVETSFYERGLRG---AAVAGGGNLRAGPLRSLLDEEDLREAAWESRGMQNETVQQNCLRQQRYDQLQRLQLEKTKAVLAQHARG 915
+HL+RI L E K+LG +AL LGS MA GA+ GAA FSADEG R+PLL VY+SAPLS+ D IA +TF R+++LRLD EH + R P D ES D F R+YD F+ +ALAFSVLE LMF LG RR+ + R +G + V G G + SLLDEED+R WE + +TVQQ + +QRY+QL+R LEK + +L +H RG
Sbjct: 1 MHLNRIGLEGEGKLLGSIALVLGSMMAIGALCGAAGTMFSADEGGRLPLLGAVYLSAPLSLADLIAGVTFIVKRSEVLRLDLEHEQSRGGRPHPGPPSPVPGGDDPESQADS-FRRLYDAFLCMALAFSVLEALMFRLGSRRIAANAERHRRAQGFGESLVYGSG------MESLLDEEDVRRNGWED--WRGDTVQQGLMMEQRYEQLRRSNLEKNEGLL-EHTRG 217
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-11_005900.1 |
| Exons | 4 |
| Model size | 2440 |
| Cds size | 855 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7594.15584.1 >prot_H-paniculata_contig7594.15584.1 ID=prot_H-paniculata_contig7594.15584.1|Name=mRNA_H-paniculata_contig7594.15584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=285bp
MRSSHFSLLRTPWANNLENNGGRRQIVRFNNSITSHSPTFVPLTVLRGLA GVAFLCLGEFFWVHLHRIDLRVEAKVLGGMALGLGSAMAFGAIMGAAVVS FSADEGCRIPLLATVYISAPLSIGDFIAALTFTCLRAQLLRLDSEHFRQH QKRNRPDAWESSGDDQFGRVYDVFIFLALAFSVLEMLMFHLGRRRLVETS FYERGLRGAAVAGGGNLRAGPLRSLLDEEDLREAAWESRGMQNETVQQNC LRQQRYDQLQRLQLEKTKAVLAQHARGGPRNNSL* back to topmRNA from alignment at H-paniculata_contig7594:2998..8769- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig7594.15584.1 ID=mRNA_H-paniculata_contig7594.15584.1|Name=mRNA_H-paniculata_contig7594.15584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5772bp|location=Sequence derived from alignment at H-paniculata_contig7594:2998..8769- (Halopteris paniculata Hal_grac_a_UBK monoicous) CAGCGAGTGCACACGACAAGGCAGACAGCAACACAGACACAGATCTACTA
ACTTGCATGCGCTCGTACTATACCCTGTGATACCATGAGGTCTAGTCATT
TCTCGCTACTACGGACACCATGGGCAAACAACCTGGAGAACAACGGTGGA
CGAAGGCAAATTGTCCGGTTCAACAACTCGATCACATCTCATTCGCCGAC
CTTTGTTCCGCTGACCGTCTTGCGAGGGTTGGCTGGGGTCGCCTTCCTTT
GCCTGGGCGAGTTCTTCTGGGTGCACCTTCATCGTATCGACTTACGTGTG
GAAGCCAAGGTTCTAGGTGGGATGGCTCTAGGTCTGGGTAGTGCGATGGC
CTTCGGGGCGATCATGGGCGCCGCAGTTGTGTCGGTGAGGAGAAACTCCG
CTATGGAAAAGAGAAATGTAGCATTGTGTTGGGAGTACTTTAAATAGTCC
ATGCTGCCGTGTCACAGGCCATACAGGTTTACATACGCACCTGATAGCCC
ACGATACAAGAGAATAGTAGAGTTCTGACATACGGTGGAGGAACGAACTG
TCATGAGTTCGACATTTTTTCACGGCGAATAGGTATTGAAAGTGCATATC
GCTGTGGTTGTCGAAGAGCTATCGTTTGTTCAGGAAATATATAGAAAATG
ATTCATGTGTTCCTACAAGTAGATGCGTTATACTCGCAAATTTACCTGTA
TCGCGGCCCCTGTATAACCCATGTCACAATAGCGCACAATACCAATGCGA
ACTCAGGGCTGGTTGGCAATGGCAATAGCTGTGGAGTGAGGAATCAACAG
CAGAGTTTTCTCGTGAAGATCGTGTTGATATGGACGTGACTTCAAGAAAA
GAGCCAGCGGGATACTCTTGGTACCGACCGGCTCGAACGCCACAGATAAT
CTGTCAATTGCGGCTATCGACAACGTCGACTGCGTGGGTATGTCAAGTGA
ACACGCACGGCACTTGTGTACTTCGAATGAGCACACTCTGCCCCAACCCC
AAAGCTCCTCTCGCAATTTTGCCCTACTCTACCATACATGAACCGCTGGA
CACTGAAATTACCATTTTTTTCATGCTATGCTCTTTGCCTCCAATTTTGT
TTCCTATTTGTGCTGGCTCATGCTTTCACTTTGTTTAGATGTACGTACCA
AGTAATTTAGAGGATATTCTGTAGTTACTAGCTTCGGTGTGTACGTGGAA
TTTGTCAAGTTTCAAGTTTCCCCGTTCGAAGTACTTTGGAACTAGCTTGT
GCACTCTCTTTTTTGTCCGGAAGACATCCGGCGGAGCTTGTTCAAACTGC
TGTATTGATGGAGAGTTGGGATGGTAGTCATCACGAAGCAGAGATGAAGG
TGGGTGCTTCCAGGATTTGTACCAGAGAGATAAACAGGATACCCTTGTTA
TGCAAATATGGTTATCTGTTCATAGGCGAGGTACAAAGGCTACGCGCAAG
GATGCGTCTTGTTGGACGCCTGCCAAGAGGAATCAGCGACGCAACAAGTC
TACCAATGTTGTTCAGCGAAAGTTTCTGTTAGACGATGAAGGCATATATT
TATTTATTTCAAAGTTTTACACGCAGCTGTAACTTATATAGCATTCAAAC
TACACGGTGTCAATTTTGTGGCATCTGGTTACGGTCCCCCAGCGCCACGT
TGCAAATGCTCTATTGTAAAAGTAGAGGACAGGAAATTATGTTCTCTCTA
CCGGCTGCCAAGAAGAGTGATTTGTCACATGAAGCGCAGTGTACCGTGTA
GTTTGCTGAAACCTTTGCCTCTGATCACGGGTCCGAGGTATTGGATGGAT
ATCCTAGACTTAAGAATTACTGTGTTGTGTAGCCTTGATCTGAAGTCTGG
AATGCGCCGGCCAAGTAACTGTCAGTTCACATGTTTGAGCTGATCACGAA
AACCCCTTACGTATCTCTGCAAACCGGCGTTACACTTTCTCTGTAGACGA
CATTCTATTGGTTATATTTTGTAATTTTGCCGCAGTTTGTCTTTTACCTT
CACCACCGAATCATGACAATATCGAAGAGTATACAACATTTGCTAAGACG
GCACAAAGCAAAGATCTTATCCGTCAGGCTGGCGCTTTCCCCGTAATATT
TCCGACAAACGTTCAATGGCATGCTCCCAAACCATTGGCGATTTAATCCT
GACATGAATCGTTTGTTCCACCCCGACTAGTCTTGTCACGACCTACTCGA
TGCGCACCGTGACTGCCGTAGAAGACTGAAGTCAAAAACTTAGTATAGGA
GAAGCTGTGAAGCAGCATGTTATGCTTTGTGGGACAGATGACGGGACGTT
GTTTTAGACACGCCATAAATATGTCCAATGAAGTTACCGTCTGTGTCTGT
GAGTGCTTATTTTATGTTCTTTGTGCCTGTCGTGGCGACGACGTGGAGAA
ATACTCCATCGCTGGCATCGTTAAGGGAGACGCTGCACGCTAACCCGTGT
TGCTTTGTGGGAAAACGCCCTCCGAGATTTCTTGGATTATACTCGACGAC
ATGCTCCCCAATCGGCGGTGATGTAGCTCTGACATAATTTTTTTTTTCTC
ATTCTCCTCTATTCTCAGTGCCTGCTCGGCGCGTAGACTCGTGGTGACAA
AAATGTTTTGGGCGAGTAGCACATGGCACTGTCTGTATGAAGTGTTGACC
TGTGGGCTGCCTTGTTTTTCTTTCGACTTTTTCCTGTTTTCATATATGTT
TCACATGCTTTTATCATGCTTCAATGTACAAGTGCTGCACTTTTCTGTGC
TCTGCAATAATCTGTCTGTAGAGCATGCATCCATCTCTAGAGATGTATTT
TGGACAGACCTTATCGAGTGGAACACTCGAAACCAACGCATGTGCTCAGC
GATGAATTCAGCCTGCCTGAGGTCAGGCAGTGCCTTTCACCCCTTGAGCA
ACTTCATTGTGCATGCTTCAGTAACGTGTGATCCTCGTCCCCAATCGCGT
ACCGCATGTTCACCGCTTGCTGCCAGTTTTCGGCGGACGAGGGTTGTAGG
ATACCACTGCTCGCGACTGTGTACATCTCTGCTCCCTTGTCCATAGGGGA
CTTCATCGCGGCATTGACTTTCACCTGCCTGCGGGCACAGGTGAGCGTGC
AGCTTAGTCACTCACAGACCGTATAATGAAAACGAGATGCACCCTCAAAG
TCGGGGTACCAAAGTCGTTCAATGTATTCATGCATATTGCACCGATGCGT
TCTCAAAGGGGGGCGCATGGCTGCAGGGCTGACGGCAATCAAGTAGGGTT
CGAAAGTAAGGTCTCGCGAAGTGTTATCTCTCCGCTGTTCTCTTTGTTCT
GCTTACTTGAAAAGCATGTACTGCAGTAGTGCAGCAGTACACTGCCGTCG
AATTTGGTAGACATTCTCGAGATCGGTTCTATGGAGTTGTCGACAACATT
TAAGGCCCCGAAAAGAAGCACAACTGTAACGCGAGGAATAGAATTAAATA
CTTGCAGCGATGCTCGCTTTCGCGATGAAATTTTTCGGGCCTACGTACCC
GACCATCCCCCGGCCACGCTCTGTGGCATGTCCATATCGCAGTTGTTACG
TTTGGACAGCGAGCACTTCAGGCAACACCAAAAACGAAACCGACCAGACG
CCTGGGAATCTTCGGGAGATGACCAGTTCGGACGCGTGTACGACGTGTTC
ATATTTTTGGCTCTAGCGTTCTCAGTGTTGGAAATGCTCATGTTTCATTT
GGGAAGGAGACGGTTGGTGGAAACGTCCTTTTATGAGCGGGGACTGCGCG
GCGCGGCCGTGGCAGGGGGGGGCAACCTTAGGGCTGGGCCGCTTCGTTCC
TTGCTTGATGAAGAGGATTTGAGGGAGGCGGCGTGGGAGAGTAGAGGCAT
GCAGAATGAGACAGTGCAGCAGGTGTGTAGGTAACTGGAGCCGGACGTAT
TTATATGCGTGCCATCTCTGGATATTTCTCTTGGCGATGAGTTCACAAAC
TGGATAATCGTAGGGCCAATGTTGTATTTAGTGGTAGCAGAACATGGTAA
TGCGCTGAAGCGAGAGCCCTCAATTGTCATCTCACAGGCAGTCATGGATA
TAGTGCGGTAGGCCTTTCCCTAAATCCTGCACAGTGGCTTTGTATCATGC
AAGTATGATTGTACTCGCCCTCGTCGCACTGCCGTTCTCTGTTCCTCCCC
TCTAAACTAGAACTGTCTTAGGCAGCAGAGATACGACCAGCTCCAAAGGT
TACAGCTGGAGAAGACCAAGGCCGTGCTTGCGCAACATGCCAGGGGGGGG
CCCCGGAATAATAGCTTGTGACCTACCTGTGTATCTATCTCCCCCTTGGT
TTGCGCTTTTCGTAGCTATTCGAATGGTCCAAGTTGTGTGTGATGGACGT
AACAACAGATGTGGTGCCCTCTCTTTCGGCGGGGAAAGGGGAGATAAGCC
CGTTTCCCACCCATGGATACATACGCAAAAAGGCTGTGGGCGAAAACCAT
TTTTTCAAGAAAATAGTATTTGAATTTCTTAGGTGTTGAACGTTTCGCGA
TAGACGCAGTCTTTATGGGAGGTGACAATGGATGTATATATTGGCATGTG
GTAAATGTGTGCTGCTAGGCGTTTTGTACAGAAAGCAAAAGTTAATCTTG
AGTTCGAATCCCGGTAGATACAGATTTTCTTCGTGTGTTTTCGATATGGA
AGGTGCGGCACTTCTTGGGAGAGAAAAACCTGGGATATATTGGTCCTGTG
TGAAGGATGGAAGTGTCGTGGAGAGATAAAACTCGTGAACAAATTGACCT
GTCCATTGAACAAATATCGAATCAAAGAGTGACGTTAGCGTTGGCAATGG
GAGTCGCCCTCCTCCGAGCGTAAGTGGTCGGTTATTTGGACCTCACGGAA
TAACTTTTGTACAGAAAGTAGCTCAGTGGTGAGCTGCTTTCTGTACAGTT
TGCTGGGTTTTTTTCGGAGCTGTGGCGCTTTGCTTCAGTTTGTGGTTGAT
TCATGTGTCGCGTGCAGGGGTCTGGCGCCTACAGTGATGAGTTGTGGTTG
CTCGCGGGTTAATTGGGGCCTTTAATTCCATGTAGAGTGAGAACGGCAAG
ACCCCGCAGTTGCTTCCTACCGCCGAGTAACAGACAAGCCTCACACTCAA
GACGGTCGACTCCGAAATCTGGTCATGTTGAGCGCGATTGGGGCTTTATT
GTGTGTTACATTTTCATACAATCAAACCGTTCAGGAGCATCCAACCCTGT
TATCAGCTGTGCGGATCTTGTTTATTTCTCGGCCGTTAAGTAACGAGATC
GGTGTTTGGCCATTCTCGCTCTTAAGGTGAATCCAAGACCCCAACTAATC
GTCGAAAAAACGAACTCCGGGTGGATTTGAGCTAAAATGGGTTAACGACC
CATCGAAAGTTGAATAGCATGCTGGACATTTTGTCGTGATGTACAGCATT
TGTAGACGTAATTGTCATTATTCACGACCGGATGTTAGGTATATAATTTT
TGGTGGTGAGGAAGTACTCCTCCCCAAGAGTTCAGCTGCAGATGATAGGG
TGCGGTCCCTGCGTGGTTAGCGCAGGATATTTGTACCTCGGGAGCCATCA
TTATGGGGGTGTTACGTACTGGTACCGCTTTGCTCGGGTCTTCGCGTGTG
CACATGTCGAGGAGAGCTCTGGCAGAGTTATATGAATGCGACCAGGTTAA
TTTTTTCATATTTACGCTGCCAACGTGCAGATGCGATTTTCGTACCGTAA
CAGAGGTGCATAGCATCCTTTGATTTGAAAGAAATGTCGGGCGAACTAGT
AAGCATCCGCTGCGTGCTCTTT back to topCoding sequence (CDS) from alignment at H-paniculata_contig7594:2998..8769- >mRNA_H-paniculata_contig7594.15584.1 ID=mRNA_H-paniculata_contig7594.15584.1|Name=mRNA_H-paniculata_contig7594.15584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig7594:2998..8769- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAGGTCTAGTCATTTCTCGCTACTACGGACACCATGGGCAAACAACCT GGAGAACAACGGTGGACGAAGGCAAATTGTCCGGTTCAACAACTCGATCA CATCTCATTCGCCGACCTTTGTTCCGCTGACCGTCTTGCGAGGGTTGGCT GGGGTCGCCTTCCTTTGCCTGGGCGAGTTCTTCTGGGTGCACCTTCATCG TATCGACTTACGTGTGGAAGCCAAGGTTCTAGGTGGGATGGCTCTAGGTC TGGGTAGTGCGATGGCCTTCGGGGCGATCATGGGCGCCGCAGTTGTGTCG ATGAGGTCTAGTCATTTCTCGCTACTACGGACACCATGGGCAAACAACCT GGAGAACAACGGTGGACGAAGGCAAATTGTCCGGTTCAACAACTCGATCA CATCTCATTCGCCGACCTTTGTTCCGCTGACCGTCTTGCGAGGGTTGGCT GGGGTCGCCTTCCTTTGCCTGGGCGAGTTCTTCTGGGTGCACCTTCATCG TATCGACTTACGTGTGGAAGCCAAGGTTCTAGGTGGGATGGCTCTAGGTC TGGGTAGTGCGATGGCCTTCGGGGCGATCATGGGCGCCGCAGTTGTGTCG TTTTCGGCGGACGAGGGTTGTAGGATACCACTGCTCGCGACTGTGTACAT CTCTGCTCCCTTGTCCATAGGGGACTTCATCGCGGCATTGACTTTCACCT GCCTGCGGGCACAGTTTTCGGCGGACGAGGGTTGTAGGATACCACTGCTC GCGACTGTGTACATCTCTGCTCCCTTGTCCATAGGGGACTTCATCGCGGC ATTGACTTTCACCTGCCTGCGGGCACAGTTGTTACGTTTGGACAGCGAGC ACTTCAGGCAACACCAAAAACGAAACCGACCAGACGCCTGGGAATCTTCG GGAGATGACCAGTTCGGACGCGTGTACGACGTGTTCATATTTTTGGCTCT AGCGTTCTCAGTGTTGGAAATGCTCATGTTTCATTTGGGAAGGAGACGGT TGGTGGAAACGTCCTTTTATGAGCGGGGACTGCGCGGCGCGGCCGTGGCA GGGGGGGGCAACCTTAGGGCTGGGCCGCTTCGTTCCTTGCTTGATGAAGA GGATTTGAGGGAGGCGGCGTGGGAGAGTAGAGGCATGCAGAATGAGACAG TGCAGCAGTTGTTACGTTTGGACAGCGAGCACTTCAGGCAACACCAAAAA CGAAACCGACCAGACGCCTGGGAATCTTCGGGAGATGACCAGTTCGGACG CGTGTACGACGTGTTCATATTTTTGGCTCTAGCGTTCTCAGTGTTGGAAA TGCTCATGTTTCATTTGGGAAGGAGACGGTTGGTGGAAACGTCCTTTTAT GAGCGGGGACTGCGCGGCGCGGCCGTGGCAGGGGGGGGCAACCTTAGGGC TGGGCCGCTTCGTTCCTTGCTTGATGAAGAGGATTTGAGGGAGGCGGCGT GGGAGAGTAGAGGCATGCAGAATGAGACAGTGCAGCAGAACTGTCTTAGG CAGCAGAGATACGACCAGCTCCAAAGGTTACAGCTGGAGAAGACCAAGGC CGTGCTTGCGCAACATGCCAGGGGGGGGCCCCGGAATAATAGCTTGTGAA ACTGTCTTAGGCAGCAGAGATACGACCAGCTCCAAAGGTTACAGCTGGAG AAGACCAAGGCCGTGCTTGCGCAACATGCCAGGGGGGGGCCCCGGAATAA TAGCTTGTGA back to top
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