mRNA_H-paniculata_contig7455.15436.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7455.15436.1
Unique NamemRNA_H-paniculata_contig7455.15436.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7455.15436.1 vs. uniprot
Match: B8CGQ2_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CGQ2_THAPS)

HSP 1 Score: 63.5 bits (153), Expect = 2.640e-10
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    7 QFDQERPYHVDCTTSRSLCEVKRRRARLVLRWGTTWEALVLFL--FFIFPHQSRVSS 171
            + D ERPYH D T SR L EVK  RARLVLRWGTT E+LVLF   F +F   +R S+
Sbjct:  516 KLDSERPYHSDNTASRLLSEVKHCRARLVLRWGTTLESLVLFFCFFLVFSWGARSSN 572
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BLAST of mRNA_H-paniculata_contig7455.15436.1 vs. uniprot
Match: A0A1D1VIF1_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VIF1_RAMVA)

HSP 1 Score: 58.5 bits (140), Expect = 1.020e-9
Identity = 28/50 (56.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:   22 RPYHVDCTTSRSLCEVKRRRARLVLRWGTTWEALVLFLFFIFPHQSRVSS 171
            RPYHV+C+ SRS+ E K RRARLVLRW T WE  VL   F   ++ R  S
Sbjct:   32 RPYHVECSRSRSISEDKLRRARLVLRWVTAWEHRVLQALFFARYRQRTCS 81
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BLAST of mRNA_H-paniculata_contig7455.15436.1 vs. uniprot
Match: A0A0N4TUI9_BRUPA (Uncharacterized protein n=3 Tax=Brugia TaxID=6278 RepID=A0A0N4TUI9_BRUPA)

HSP 1 Score: 46.6 bits (109), Expect = 1.250e-5
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   22 RPYHVDCTTSRSLCEVKRRRARLVLRWGTTWEALVL 129
            RPYHV+ TTSR +C+VK+R A LVL   T WE+ VL
Sbjct:    2 RPYHVESTTSRPICQVKQRWAWLVLGSETAWESQVL 37
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BLAST of mRNA_H-paniculata_contig7455.15436.1 vs. uniprot
Match: A0A0N4TUH7_BRUPA (Uncharacterized protein n=1 Tax=Brugia pahangi TaxID=6280 RepID=A0A0N4TUH7_BRUPA)

HSP 1 Score: 46.6 bits (109), Expect = 1.400e-5
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   22 RPYHVDCTTSRSLCEVKRRRARLVLRWGTTWEALVL 129
            RPYHV+ TTSR +C+VK+R A LVL   T WE+ VL
Sbjct:    8 RPYHVESTTSRPICQVKQRWAWLVLGSETAWESQVL 43
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BLAST of mRNA_H-paniculata_contig7455.15436.1 vs. uniprot
Match: A8NMS7_BRUMA (Uncharacterized protein n=3 Tax=Brugia TaxID=6278 RepID=A8NMS7_BRUMA)

HSP 1 Score: 46.6 bits (109), Expect = 1.480e-5
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   22 RPYHVDCTTSRSLCEVKRRRARLVLRWGTTWEALVL 129
            RPYHV+ TTSR +C+VK+R A LVL   T WE+ VL
Sbjct:   11 RPYHVESTTSRPICQVKQRWAWLVLGSETAWESQVL 46
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BLAST of mRNA_H-paniculata_contig7455.15436.1 vs. uniprot
Match: A0A0N4THB6_BRUPA (Uncharacterized protein n=1 Tax=Brugia pahangi TaxID=6280 RepID=A0A0N4THB6_BRUPA)

HSP 1 Score: 46.6 bits (109), Expect = 1.610e-5
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   22 RPYHVDCTTSRSLCEVKRRRARLVLRWGTTWEALVL 129
            RPYHV+ TTSR +C+V++R A LVL   T WE+ VL
Sbjct:   15 RPYHVESTTSRPICQVRQRSAGLVLGSETAWESQVL 50
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BLAST of mRNA_H-paniculata_contig7455.15436.1 vs. uniprot
Match: A0A8K0P260_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0P260_LADFU)

HSP 1 Score: 47.0 bits (110), Expect = 3.520e-5
Identity = 21/37 (56.76%), Postives = 23/37 (62.16%), Query Frame = -1 
Query:   22 EQHQGFPRGPPP*Y*PGPTPLNFTERTGCGAIDVVWP 132
            +QH  FP G P  Y PGPT LNF +RT  G   VVWP
Sbjct:    5 QQHPVFPGGHPSKYYPGPTMLNFGDRTRTGVFIVVWP 41
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BLAST of mRNA_H-paniculata_contig7455.15436.1 vs. uniprot
Match: A0A3P7FTV6_WUCBA (Uncharacterized protein n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=A0A3P7FTV6_WUCBA)

HSP 1 Score: 45.1 bits (105), Expect = 7.470e-5
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:   13 DQERPYHVDCTTSRSLCEVKRRRARLVLRWGTTWEA 120
            D  RPYHV+ TTSR +C+VK+R A LVL   T WE+
Sbjct:   15 DSLRPYHVESTTSRPICQVKQRWAWLVLGSETAWES 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7455.15436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
B8CGQ2_THAPS2.640e-1059.65Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1D1VIF1_RAMVA1.020e-956.00Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
A0A0N4TUI9_BRUPA1.250e-561.11Uncharacterized protein n=3 Tax=Brugia TaxID=6278 ... [more]
A0A0N4TUH7_BRUPA1.400e-561.11Uncharacterized protein n=1 Tax=Brugia pahangi Tax... [more]
A8NMS7_BRUMA1.480e-561.11Uncharacterized protein n=3 Tax=Brugia TaxID=6278 ... [more]
A0A0N4THB6_BRUPA1.610e-558.33Uncharacterized protein n=1 Tax=Brugia pahangi Tax... [more]
A0A8K0P260_LADFU3.520e-556.76Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A3P7FTV6_WUCBA7.470e-558.33Uncharacterized protein n=1 Tax=Wuchereria bancrof... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7455contigH-paniculata_contig7455:2630..2806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue4.8e-08
Seed eggNOG ortholog35128.Thaps12187
Hectar predicted targeting categorysignal anchor
EggNOG OGs2CRUX@1,2R98J@2759,2XH8G@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930914.0713546-CDS-H-paniculata_contig7455:2629..28061622930914.0713546-CDS-H-paniculata_contig7455:2629..2806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7455 2630..2806 -
1691481508.2842314-CDS-H-paniculata_contig7455:2629..28061691481508.2842314-CDS-H-paniculata_contig7455:2629..2806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7455 2630..2806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7455.15436.1prot_H-paniculata_contig7455.15436.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7455 2630..2806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7455.15436.1

>prot_H-paniculata_contig7455.15436.1 ID=prot_H-paniculata_contig7455.15436.1|Name=mRNA_H-paniculata_contig7455.15436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MAQFDQERPYHVDCTTSRSLCEVKRRRARLVLRWGTTWEALVLFLFFIFP
HQSRVSSPL
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mRNA from alignment at H-paniculata_contig7455:2630..2806-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7455.15436.1 ID=mRNA_H-paniculata_contig7455.15436.1|Name=mRNA_H-paniculata_contig7455.15436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig7455:2630..2806- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCAGTTTGATCAGGAACGGCCATACCACGTCGATTGCACCACATC
CCGTTCGCTCTGTGAAGTTAAGCGGCGTCGGGCCAGGCTAGTACTACGGT
GGGGGACCACGTGGGAAGCCCTGGTGCTGTTCCTTTTCTTTATTTTTCCG
CATCAATCACGTGTTTCTTCACCCCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig7455:2630..2806-

>mRNA_H-paniculata_contig7455.15436.1 ID=mRNA_H-paniculata_contig7455.15436.1|Name=mRNA_H-paniculata_contig7455.15436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig7455:2630..2806- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCAGTTTGATCAGGAACGGCCATACCACGTCGATTGCACCACATC
CCGTTCGCTCTGTGAAGTTAAGCGGCGTCGGGCCAGGCTAGTACTACGGT
GGGGGACCACGTGGGAAGCCCTGGTGCTGTTCCTTTTCTTTATTTTTCCG
CATCAATCACGTGTTTCTTCACCCCTCATGGCGCAGTTTGATCAGGAACG
GCCATACCACGTCGATTGCACCACATCCCGTTCGCTCTGTGAAGTTAAGC
GGCGTCGGGCCAGGCTAGTACTACGGTGGGGGACCACGTGGGAAGCCCTG
GTGCTGTTCCTTTTCTTTATTTTTCCGCATCAATCACGTGTTTCTTCACC
CCTC
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