mRNA_H-paniculata_contig74410.15424.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig74410.15424.1
Unique NamemRNA_H-paniculata_contig74410.15424.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig74410.15424.1 vs. uniprot
Match: A0A0J7KFP4_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KFP4_LASNI)

HSP 1 Score: 52.0 bits (123), Expect = 2.840e-5
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:   37 VALTNQNPTINNGNMWVSDSGASNRMTNNLSKMYALRKPVAGEDVVILGNGSTMVVDLMGKLDLMFHSTIDVPAT----IEVSYLPELNFNLFSL 309
            + +T++ PTINN ++W++DSGAS+ MT+       L      E  V LGN    V+  +GK ++ F + +    T     +V Y+P+++ NLFSL
Sbjct:  153 LTVTSEWPTINNKDVWLADSGASDHMTSREEWFTKLESVGDRERPVTLGNNK--VIFAIGKGEIQFEARVADKITKYTMADVLYVPDISRNLFSL 245
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BLAST of mRNA_H-paniculata_contig74410.15424.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.210e-5
Identity = 34/103 (33.01%), Postives = 51/103 (49.51%), Query Frame = 1 
Query:   34 PVALTNQNPTINNGNMWVSDSGASNRMTNNLSKMYALRKPVAGEDVVILGNGSTMVVDLMGKLDLMFHSTIDVPATI------EVSYLPELNFNLFSLHKIQE 324
            P  + N +  +   N WV DSGAS+   NN S  +   +P  G  VV   NG  M ++  G +    H  ++ P+ I       VSY+P L +NLFSL ++ +
Sbjct:  281 PDIILNASEALEASNEWVIDSGASDHFCNN-SSWFTNLEPSTG--VVRAANGGDMAIEGCGSI----HLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRVSQ 376
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig74410.15424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0J7KFP4_LASNI2.840e-534.74Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A6G0X3B5_9STRA7.210e-533.01Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig74410contigH-paniculata_contig74410:250..606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.50023-CDS-H-paniculata_contig74410:249..6061622930912.50023-CDS-H-paniculata_contig74410:249..606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74410 250..606 -
1691481507.7343116-CDS-H-paniculata_contig74410:249..6061691481507.7343116-CDS-H-paniculata_contig74410:249..606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74410 250..606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig74410.15424.1prot_H-paniculata_contig74410.15424.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig74410 250..606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig74410.15424.1

>prot_H-paniculata_contig74410.15424.1 ID=prot_H-paniculata_contig74410.15424.1|Name=mRNA_H-paniculata_contig74410.15424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
LDDTEDGECGLPVALTNQNPTINNGNMWVSDSGASNRMTNNLSKMYALRK
PVAGEDVVILGNGSTMVVDLMGKLDLMFHSTIDVPATIEVSYLPELNFNL
FSLHKIQEKQSVLLDASDT
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mRNA from alignment at H-paniculata_contig74410:250..606-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig74410.15424.1 ID=mRNA_H-paniculata_contig74410.15424.1|Name=mRNA_H-paniculata_contig74410.15424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at H-paniculata_contig74410:250..606- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGATGATACAGAGGATGGAGAGTGCGGTTTGCCTGTAGCTTTGACGAA
TCAAAATCCAACTATTAACAATGGCAATATGTGGGTGTCTGATTCTGGTG
CAAGTAACCGCATGACGAACAATCTTTCAAAAATGTATGCCCTTCGCAAG
CCGGTGGCAGGGGAAGATGTGGTAATATTGGGGAATGGATCGACTATGGT
GGTAGATTTGATGGGAAAGTTGGATTTGATGTTTCACTCCACTATTGACG
TGCCTGCCACAATTGAAGTATCATACTTACCGGAGTTGAACTTCAACCTG
TTTTCCCTCCACAAAATTCAAGAGAAGCAATCAGTGTTATTAGATGCGTC
AGACACA
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Coding sequence (CDS) from alignment at H-paniculata_contig74410:250..606-

>mRNA_H-paniculata_contig74410.15424.1 ID=mRNA_H-paniculata_contig74410.15424.1|Name=mRNA_H-paniculata_contig74410.15424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig74410:250..606- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGATGATACAGAGGATGGAGAGTGCGGTTTGCCTGTAGCTTTGACGAA
TCAAAATCCAACTATTAACAATGGCAATATGTGGGTGTCTGATTCTGGTG
CAAGTAACCGCATGACGAACAATCTTTCAAAAATGTATGCCCTTCGCAAG
CCGGTGGCAGGGGAAGATGTGGTAATATTGGGGAATGGATCGACTATGGT
GGTAGATTTGATGGGAAAGTTGGATTTGATGTTTCACTCCACTATTGACG
TGCCTGCCACAATTGAAGTATCATACTTACCGGAGTTGAACTTCAACCTG
TTTTCCCTCCACAAAATTCAAGAGAAGCAATCAGTGTTATTAGATGCGTC
AGACACATTGGATGATACAGAGGATGGAGAGTGCGGTTTGCCTGTAGCTT
TGACGAATCAAAATCCAACTATTAACAATGGCAATATGTGGGTGTCTGAT
TCTGGTGCAAGTAACCGCATGACGAACAATCTTTCAAAAATGTATGCCCT
TCGCAAGCCGGTGGCAGGGGAAGATGTGGTAATATTGGGGAATGGATCGA
CTATGGTGGTAGATTTGATGGGAAAGTTGGATTTGATGTTTCACTCCACT
ATTGACGTGCCTGCCACAATTGAAGTATCATACTTACCGGAGTTGAACTT
CAACCTGTTTTCCCTCCACAAAATTCAAGAGAAGCAATCAGTGTTATTAG
ATGCGTCAGACACA
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