mRNA_H-paniculata_contig743.15414.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig743.15414.1
Unique NamemRNA_H-paniculata_contig743.15414.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig743.15414.1 vs. uniprot
Match: D8LH89_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH89_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.000e-27
Identity = 61/93 (65.59%), Postives = 71/93 (76.34%), Query Frame = 3 
Query:  906 SPSTVRPGSFVAQPVRATSAVVAPKTSMNMGLESLVDLVPAVPAEAHNQLLELVNSPLFLSLKADSFGGLIGPIAGCSAVAAFIVVMAPPRVD 1184
            +PS V+ GSF    VRATS +VAPK  M MGLE + D++P VP+EAHN   E+ N+PL LS+ ADSFGGLIGPI GC AVA FIVVMAPPRVD
Sbjct:   22 APSAVKSGSFATPAVRATS-MVAPK--MTMGLEQIADVLPLVPSEAHNAGFEMANNPLLLSVSADSFGGLIGPIGGCLAVAIFIVVMAPPRVD 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig743.15414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH89_ECTSI1.000e-2765.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig743contigH-paniculata_contig743:30270..31456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001000.1
Exons1
Model size1187
Cds size414
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930911.1909056-UTR-H-paniculata_contig743:30269..310421622930911.1909056-UTR-H-paniculata_contig743:30269..31042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig743 30270..31042 +
1691481507.1773665-UTR-H-paniculata_contig743:30269..310421691481507.1773665-UTR-H-paniculata_contig743:30269..31042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig743 30270..31042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930911.2047472-CDS-H-paniculata_contig743:31042..314561622930911.2047472-CDS-H-paniculata_contig743:31042..31456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig743 31043..31456 +
1691481507.1924005-CDS-H-paniculata_contig743:31042..314561691481507.1924005-CDS-H-paniculata_contig743:31042..31456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig743 31043..31456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig743.15414.1prot_H-paniculata_contig743.15414.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig743 31043..31456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig743.15414.1

>prot_H-paniculata_contig743.15414.1 ID=prot_H-paniculata_contig743.15414.1|Name=mRNA_H-paniculata_contig743.15414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MSNSGYRQLHQHSKSSHRWRKEFRQFKTILCNRASFHRAPLRSASPSTVR
PGSFVAQPVRATSAVVAPKTSMNMGLESLVDLVPAVPAEAHNQLLELVNS
PLFLSLKADSFGGLIGPIAGCSAVAAFIVVMAPPRVD*
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mRNA from alignment at H-paniculata_contig743:30270..31456+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig743.15414.1 ID=mRNA_H-paniculata_contig743.15414.1|Name=mRNA_H-paniculata_contig743.15414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1187bp|location=Sequence derived from alignment at H-paniculata_contig743:30270..31456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGATCGAGGACTCATGTTTGCGACATACTTTCTAGCAGCTCCACAAG
AATAGGATACCCGTTAGACCTGCCCTTGTGTTCTGCATGGTTCTGTTAGA
CATGACTAATGAATTCTGAAAACTCTAATCGAAACCCTCGTGGGAGAGAA
GCAAAGGGTGTAGTGCGCAAGGGGGCTCAAGCTTCGAGGGTGGTAATCGG
CCAGCATGTAGACGGCAATACGTCCAAGCTATCGCACAGTATGGAAAGTT
ACTGAATCGATACCAACAGGGCTTAGTAGAGCTTGCTTCAAGTCATAATG
ATGTGGCACGGATATGATTCGTGGTCAGACAGATGAGCAAATTCGCGAGG
GACTAAAGCTTGAATAGTGGTGGGTTTTGTCAAGTGCTACCATTCGAAGC
TCGGCTTACACCATGCACCAATACGGCATTGTTGTAGCAGATCTAGAAAA
AAATTAGATTCAACATGGCTCCAGGTTTTCCCCGGCTGTCATGGTGCATT
GTCTTCCCTTCGGGTGCATGGATGGATTTTGCGGACGTACCCAAGACGAA
ACATGATTGAGATATATACCGGTTTGAGAACATCTTGGAACAGTTTTGTT
TGTTGACTTATTCGGCGTGAGAGCTTTTTGCCGCCTCGCCCGGTCAACCA
CTAACCCGAACACTGTATCACCATGATGACGCCAATTTCTGTGTGGATCT
GAGATATTGGCATCATGGTTTGGCTGATGTGAGCTTCGCCGGAATTACAC
AATACTTGCTGAGTGTAGGGTATATGAGTAATAGTGGCTACCGCCAATTG
CATCAACATTCGAAATCATCTCATCGCTGGAGGAAGGAATTTAGACAGTT
CAAAACAATTTTATGTAATCGTGCATCTTTCCATCGTGCTCCGCTCCGCT
CCGCGTCTCCATCTACAGTCCGGCCTGGATCGTTCGTCGCGCAGCCCGTA
CGCGCCACTTCCGCTGTGGTAGCACCGAAGACCAGCATGAACATGGGTTT
GGAATCGCTTGTTGACCTCGTGCCAGCCGTACCGGCGGAGGCACACAACC
AGCTTTTGGAGTTGGTGAACAGCCCCCTGTTCCTTTCCCTAAAGGCGGAC
TCTTTCGGTGGATTGATCGGCCCCATCGCAGGATGCTCGGCCGTGGCAGC
GTTTATTGTTGTTATGGCACCCCCTAGGGTGGATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig743:30270..31456+

>mRNA_H-paniculata_contig743.15414.1 ID=mRNA_H-paniculata_contig743.15414.1|Name=mRNA_H-paniculata_contig743.15414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig743:30270..31456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTAATAGTGGCTACCGCCAATTGCATCAACATTCGAAATCATCTCA
TCGCTGGAGGAAGGAATTTAGACAGTTCAAAACAATTTTATGTAATCGTG
CATCTTTCCATCGTGCTCCGCTCCGCTCCGCGTCTCCATCTACAGTCCGG
CCTGGATCGTTCGTCGCGCAGCCCGTACGCGCCACTTCCGCTGTGGTAGC
ACCGAAGACCAGCATGAACATGGGTTTGGAATCGCTTGTTGACCTCGTGC
CAGCCGTACCGGCGGAGGCACACAACCAGCTTTTGGAGTTGGTGAACAGC
CCCCTGTTCCTTTCCCTAAAGGCGGACTCTTTCGGTGGATTGATCGGCCC
CATCGCAGGATGCTCGGCCGTGGCAGCGTTTATTGTTGTTATGGCACCCC
CTAGGGTGGATTAAATGAGTAATAGTGGCTACCGCCAATTGCATCAACAT
TCGAAATCATCTCATCGCTGGAGGAAGGAATTTAGACAGTTCAAAACAAT
TTTATGTAATCGTGCATCTTTCCATCGTGCTCCGCTCCGCTCCGCGTCTC
CATCTACAGTCCGGCCTGGATCGTTCGTCGCGCAGCCCGTACGCGCCACT
TCCGCTGTGGTAGCACCGAAGACCAGCATGAACATGGGTTTGGAATCGCT
TGTTGACCTCGTGCCAGCCGTACCGGCGGAGGCACACAACCAGCTTTTGG
AGTTGGTGAACAGCCCCCTGTTCCTTTCCCTAAAGGCGGACTCTTTCGGT
GGATTGATCGGCCCCATCGCAGGATGCTCGGCCGTGGCAGCGTTTATTGT
TGTTATGGCACCCCCTAGGGTGGATTAA
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